Bartonella kosoyi strain Tel Aviv plasmid pTLV-1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
Bartonella kosoyi sp. nov. and Bartonella krasnovii sp. nov., two novel species closely related to the zoonotic Bartonella elizabethae, isolated from black rats and wild desert rodent-fleas
Submitted (15-AUG-2019) The Koret School of Veterinary Medicine, The Hebrew University of Jerusalem, Hertzl, Rehovot 76100, Israel
REFSEQ INFORMATION: The reference sequence is identical to\nCP042964.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2018\nAssembly Method :: UNICYCLER v. 2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: Illumina MiSeq and Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/26/2023 05:28:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,959\nCDSs (total) :: 1,907\nGenes (coding) :: 1,852\nCDSs (with protein) :: 1,852\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 37 of 55\nPseudo Genes (incomplete) :: 31 of 55\nPseudo Genes (internal stop) :: 22 of 55\nPseudo Genes (multiple problems) :: 27 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005864542.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_007347997.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398794.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006926454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012230211.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004857191.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007348024.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024771.2
phenylacetate--CoA ligase family protein
COORDINATES: protein motif:HMM:NF024925.2
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: similar to AA sequence:RefSeq:WP_012231121.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005864560.1
COORDINATES: similar to AA sequence:RefSeq:WP_004857207.1
COORDINATES: similar to AA sequence:RefSeq:WP_005774617.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012755128.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347976.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347977.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_007347978.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167168.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_007347980.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347984.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007347985.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398784.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398785.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007347988.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_015398787.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347990.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007348012.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347994.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864540.1
P-type conjugative transfer protein TrbJ