Bartonella kosoyi strain Tel Aviv plasmid pTLV-1, complete sequence.
type: Entry
definition: Bartonella kosoyi strain Tel Aviv plasmid pTLV-1, complete sequence.
sequence version: NZ_CP042964.1
sequence date: 2023-04-26
sequence: sequence
division: CON
label: NZ_CP042964.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08765113
keyword: RefSeq
source: Bartonella kosoyi
organism: Bartonella kosoyi
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
reference: 1
references: 32100689
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP042964.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2018\nAssembly Method :: UNICYCLER v. 2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: Illumina MiSeq and Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/26/2023 05:28:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,959\nCDSs (total) :: 1,907\nGenes (coding) :: 1,852\nCDSs (with protein) :: 1,852\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 37 of 55\nPseudo Genes (incomplete) :: 31 of 55\nPseudo Genes (internal stop) :: 22 of 55\nPseudo Genes (multiple problems) :: 27 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 41483
topology: circular
so has quality: SO_0000988
location: 1..41483
location: region:1-41483:1
RO_0002162: 2133959

NZ_CP042964
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08765113
type: BioSample
SIO_000068: biosample

1
title: Bartonella kosoyi sp. nov. and Bartonella krasnovii sp. nov., two novel species closely related to the zoonotic Bartonella elizabethae, isolated from black rats and wild desert rodent-fleas
author: Gutierrez, R.
author: Shalit, T.
author: Markus, B.
author: Yuan, C.
author: Nachum-Biala, Y.
author: Elad, D.
author: Harrus, S.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 3
pages: 1656-1665
year: 2020
pubmed: 32100689

32100689
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Gutierrez, R.
author: Shalit, T.
author: Markus, B.
author: Harrus, S.
journal: Submitted (15-AUG-2019) The Koret School of Veterinary Medicine, The Hebrew University of Jerusalem, Hertzl, Rehovot 76100, Israel

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41483:1
position: 41483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-41483:1:source
so part of: sequence
organism: Bartonella kosoyi
mol type: genomic DNA
strain: Tel Aviv
isolation source: Rattus rattus
type material: type strain of Bartonella kosoyi
plasmid: pTLV-1
country: Israel: Tel Aviv
lat lon: 32.0853 N 34.7818 E
collection date: 2006

2133959
type: Taxonomy
SIO_000068: taxonomy

D1093_RS09655
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: trbL
locus tag: D1093_RS09655
old locus tag: D1093_09655
so part of: sequence
location: join(40893..41483,1..840)
location: region:1-41483:1
so has part: feature:40893-41483:1:exon
so has part: feature:1-840:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:40893-41483:1:exon

position:40893:1
position: 40893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-840:1:exon

position:840:1
position: 840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

D1093_RS09655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: trbL
locus tag: D1093_RS09655
old locus tag: D1093_09655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005864542.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MLRNKKRVFLIFFLIVLGYIFFTDISFANGLDKTKEFNGLLDLIQNQSHRWYSKLHYYGFRLFWLLATLQFILSFIPLLFKQSDIADFVGELVKFILVIGFFAALLEYSQEWGTAIVESFRTAAADASGRGRNLFPSDILGEASDIMEAMANVSTWNPITSVLIAIQSVIVFLCFGFIAVLLAVTLIESYIVINASVIFMGFGASQWTREISITTFRYTVSVGAKLFVMTLLVTLISDSMKAWKDAYVYSSASNWTLLGLSLLCVYLTKTLPEIIAGLISGSSGGSGATIGAMAGAAVGAAASIAAIAATGGASAAGGGASAAGGGASAAGGMGGGSSMMGLGSNVNASKMTGNSFKDSGSKPQSGGNPRVAGGENRFTSTSQPQAKSVSPDQSKLPSLKMRDVADMTLKGAGHMAAFCIPGMEDAANLSLNAPPTSPEYNDIQFYSDNKSQSDEAKTSNMMENTISGAETTISKN
SIO_010081: D1093_RS09655
subclass of: SO_0000673
so part of: D1093_RS09655
location: join(40893..41483,1..840)
location: region:1-41483:1
so has part: feature:40893-41483:1:exon
so has part: feature:1-840:1:exon

WP_244614055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40893-41483:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-840:1:exon

D1093_RS10020
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS10020
so part of: sequence
location: complement(929..1093)
location: region:929-1093:-1
so has part: feature:929-1093:-1:exon
subclass of: SO_0000010

position:929:-1
position: 929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1093:-1
position: 1093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:929-1093:-1:exon

D1093_RS10020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS10020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347997.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTILLCIVMLAVGFSITGCGKTEEEKRRAQQEEQAKKFFETKSPDTDRGHAF
SIO_010081: D1093_RS10020
subclass of: SO_0000673
so part of: D1093_RS10020
location: complement(929..1093)
location: region:929-1093:-1
so has part: feature:929-1093:-1:exon

WP_167309107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:929-1093:-1:exon

D1093_RS09665
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09665
old locus tag: D1093_09665
so part of: sequence
location: complement(1507..2085)
location: region:1507-2085:-1
so has part: feature:1507-2085:-1:exon
subclass of: SO_0000010

position:1507:-1
position: 1507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2085:-1
position: 2085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1507-2085:-1:exon

D1093_RS09665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09665
old locus tag: D1093_09665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398794.1
GO process: GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication/maintenance protein RepL
translation: MKEIKLRQERYSPYENPFLNESEIYTYNQIIKIHITQRKLVDPNTGEEIDIPTIHVIEKEEEKNFIKVFAAGIQTIFDLSRTGYRALVLALQAYHSNQGNHDESITLIWYDGGVNGQKLDMTDRTFYSGLKELTNKGILKPKLPNQYWVNPLLFFKGEKIAFMKEYQIEPPSTKSDIPSNEYQTDLEDFTKI
SIO_010081: D1093_RS09665
subclass of: SO_0000673
so part of: D1093_RS09665
location: complement(1507..2085)
location: region:1507-2085:-1
so has part: feature:1507-2085:-1:exon

WP_150222378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1507-2085:-1:exon

D1093_RS09670
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09670
old locus tag: D1093_09670
so part of: sequence
location: 2138..2635
location: region:2138-2635:1
so has part: feature:2138-2635:1:exon
subclass of: SO_0000010

position:2138:1
position: 2138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2635:1
position: 2635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2138-2635:1:exon

D1093_RS09670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09670
old locus tag: D1093_09670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006926454.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTITEESFLDVSSSISNYDNYITTMTVSISAKQRKQTVRYDLCPFVNDVVVSIKDLNEQITVNVALIFNLKAAGIKVFFVLAWMLQNRLIHTNTVILDKAVLETFLTAQEKKLALSATTFFRGISELEKAGIIAQQNHRGWYFINPDFLLNRKTVVLEKDIVFKE
SIO_010081: D1093_RS09670
subclass of: SO_0000673
so part of: D1093_RS09670
location: 2138..2635
location: region:2138-2635:1
so has part: feature:2138-2635:1:exon

WP_244614056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2138-2635:1:exon

D1093_RS09675
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: repC
locus tag: D1093_RS09675
old locus tag: D1093_09675
so part of: sequence
location: 2931..4304
location: region:2931-4304:1
so has part: feature:2931-4304:1:exon
subclass of: SO_0000010

position:2931:1
position: 2931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4304:1
position: 4304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2931-4304:1:exon

D1093_RS09675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: repC
locus tag: D1093_RS09675
old locus tag: D1093_09675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012230211.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MVNKISGRKLSAHHIEFRKLAENAEMGSVSRGQLIGLVNQLEITGFIREIEAKLLLTLLRTAQRDEFEKGGLPIVFKSNKRLSYEINRSEGRVSRLLSRLYDGGFIVMRDSGNFKRFPVRNHDADIITACGIDLRILVARYHELKQKTDEILEVHKKHEEALKYFKGLLRQIRYSFALIEATPFVSMLFSRMQKIAHIIGRPAKASVGKLHKAIYLLEWILQKFFRQKTSKTTYTYVTGDIHIEHTTPKHICNCNKNECSDHSERTQINNITSGHEKMAYEKIEKSKAGSALPSKNNKSLQIKPELLVEALPNVTMFMKHGLQSERDLIGSMEFFAKMNRISSHAVEEAKKNMGIKRAALAIAIIFEKYCKELVKSPGGYLRGMIAKENRGELYLERSFYALLNKASEEKLKGFCTKKAEKNEQIKPNDQKNSLLRSEFKKVIKTLNMQTASKKIVL
SIO_010081: D1093_RS09675
subclass of: SO_0000673
so part of: D1093_RS09675
location: 2931..4304
location: region:2931-4304:1
so has part: feature:2931-4304:1:exon

WP_150222380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2931-4304:1:exon

D1093_RS09680
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09680
old locus tag: D1093_09680
so part of: sequence
location: 4318..4665
location: region:4318-4665:1
so has part: feature:4318-4665:1:exon
subclass of: SO_0000010

position:4318:1
position: 4318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4665:1
position: 4665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4318-4665:1:exon

D1093_RS09680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09680
old locus tag: D1093_09680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDETEEMKEMLLMYKPSSDMAQLFNIIPSLFLMVKTINATEVIKAVWFLLQGKNKKDITLTISDLHTERKLLSFSFSDEDDFQKIVDVFLIKLKDPKSCFKYELGIYKDYFKLS
SIO_010081: D1093_RS09680
subclass of: SO_0000673
so part of: D1093_RS09680
location: 4318..4665
location: region:4318-4665:1
so has part: feature:4318-4665:1:exon

WP_150222383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4318-4665:1:exon

D1093_RS10405
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS10405
old locus tag: D1093_09685
pseudo: true
so part of: sequence
location: <4840..5149
location: region:4840-5149:1
so has part: feature:4840-5149:1:exon
subclass of: SO_0000010

position:4840:1
position: 4840
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5149:1
position: 5149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4840-5149:1:exon

D1093_RS10405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS10405
old locus tag: D1093_09685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004857191.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: resolvase
SIO_010081: D1093_RS10405
subclass of: SO_0000673
so part of: D1093_RS10405
location: <4840..5149
location: region:4840-5149:1
so has part: feature:4840-5149:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4840-5149:1:exon

D1093_RS09690
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09690
old locus tag: D1093_09690
so part of: sequence
location: complement(5146..6192)
location: region:5146-6192:-1
so has part: feature:5146-6192:-1:exon
subclass of: SO_0000010

position:5146:-1
position: 5146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6192:-1
position: 6192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5146-6192:-1:exon

D1093_RS09690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09690
old locus tag: D1093_09690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007348024.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MQTDTLKITQELLTLITEIDEFKGAWRAFGTLAPERLNALRHIATVESIGSSTRIEGNKLTDREIEKLLLNLEVKSFKSRDEQEVIGYAKVMEIIFQSWKDIPITENHIKQLHRDLLYESDKDERHRGEYKTLRNDVAAFNSEGKMVGIVFETATPFDTPYRMQELIDWFNKTNELNNLHPLLMIAIFNVTFLAIHPFQDGNGRLSRILTTLLLLQKGYVYVPYSSLESIIENNKENYYLALNQTQKTIYTKTPNWEPWILFFLRALQKQKRQLEMKIESEKNALLNLSELALNIIDYVRDHGRVTTRDMVREIGASPNTLKATFTSLVEKGLLIRHGGGRSTWYSLP
SIO_010081: D1093_RS09690
subclass of: SO_0000673
so part of: D1093_RS09690
location: complement(5146..6192)
location: region:5146-6192:-1
so has part: feature:5146-6192:-1:exon

WP_150222385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5146-6192:-1:exon

D1093_RS10410
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS10410
old locus tag: D1093_09695
pseudo: true
so part of: sequence
location: <6242..6388
location: region:6242-6388:1
so has part: feature:6242-6388:1:exon
subclass of: SO_0000010

position:6242:1
position: 6242
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6388:1
position: 6388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6242-6388:1:exon

D1093_RS10410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS10410
old locus tag: D1093_09695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004857191.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: resolvase
SIO_010081: D1093_RS10410
subclass of: SO_0000673
so part of: D1093_RS10410
location: <6242..6388
location: region:6242-6388:1
so has part: feature:6242-6388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6242-6388:1:exon

D1093_RS09700
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09700
old locus tag: D1093_09700
so part of: sequence
location: complement(6930..7931)
location: region:6930-7931:-1
so has part: feature:6930-7931:-1:exon
subclass of: SO_0000010

position:6930:-1
position: 6930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7931:-1
position: 7931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6930-7931:-1:exon

D1093_RS09700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09700
old locus tag: D1093_09700
inference: COORDINATES: protein motif:HMM:NF024771.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enolase C-terminal domain-like protein
translation: MTCLDTIKITNIHIEIITRPLTYPFRIAGEVHYDVLTLTVILEHKGIIGRGECNPYSVSGHNLESVQAEIEAVRKLLLCGINRIALLEVMSPGPARNAVDCALIDLECKILQTPVSKLLGIETSKEICTAQTIGILQNKKELDYFTNKQLPIIKLKVDNSTSTSVISKLKDIFPNTQLIVDANGSLKVSLSEWLYELNNNSVKVLEQPVPFGNEDLLLQVKRGSVLICADESFLNVNHFDIALKYYDMINIKLDKIGGVTAALNAIQIAKANGLQVLIGCMLGTSLSAAPCWWLAQKGDLIDLDGPTMLSQDIDNAMVWSSGRISKPKKELWG
SIO_010081: D1093_RS09700
subclass of: SO_0000673
so part of: D1093_RS09700
location: complement(6930..7931)
location: region:6930-7931:-1
so has part: feature:6930-7931:-1:exon

WP_150222387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6930-7931:-1:exon

D1093_RS09705
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09705
old locus tag: D1093_09705
so part of: sequence
location: complement(7928..9316)
location: region:7928-9316:-1
so has part: feature:7928-9316:-1:exon
subclass of: SO_0000010

position:7928:-1
position: 7928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9316:-1
position: 9316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7928-9316:-1:exon

D1093_RS09705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09705
old locus tag: D1093_09705
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: phenylacetate--CoA ligase family protein
translation: METQCTTNSEVAPYIRRSKRFLRETVEAQKKLYKKWMKEKATLRKALRIPPAIRRQIQFQQLVELVDFVYLTKPFYRELYQNAGYEVGCLRTWSDFECLPIVSKEMMVEAEFDKQCMSTIKPEVLHSARTSGSSGLNLTIYQDSDSVYFRHVRYMRHCELLLGRQMKATDLRYGIYFVAERFTSLLGDYKYVTVSQDTPTKVVETHLRELKPALLLSLPSYLQRLASTGLNLESIGIEAIGTNSERSSLEERVNLSKKLGIPVLDEYSSEEMSLIAYECNCRQYHLVEDSGYFELINVGKDGYGKLVGTSFGNKAMPFVRYDQGDLVCFSSSENCTCGSTFRMIQSFRGREDEHLLDGSNSFVPADVILGLCDETLVDYKSNVLAYQIVQVAQDKAILYIKPINLSKGLDNRCIKEFITRFSSLFHYVEMQISISVTDKLNTFLSGKRQLIRVEDFFKGKVL
SIO_010081: D1093_RS09705
subclass of: SO_0000673
so part of: D1093_RS09705
location: complement(7928..9316)
location: region:7928-9316:-1
so has part: feature:7928-9316:-1:exon

WP_150222390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7928-9316:-1:exon

D1093_RS09710
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09710
old locus tag: D1093_09710
so part of: sequence
location: complement(9343..10578)
location: region:9343-10578:-1
so has part: feature:9343-10578:-1:exon
subclass of: SO_0000010

position:9343:-1
position: 9343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10578:-1
position: 10578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9343-10578:-1:exon

D1093_RS09710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09710
old locus tag: D1093_09710
inference: COORDINATES: protein motif:HMM:NF024925.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-grasp domain-containing protein
translation: MVSNTKILVIGKGFFAYRGYILEEMHAAGLEIWLADDEVDEHSDIGIISKSIKINFDADPISEAERLLCKSKLWSNVTGICYIESLLSWAADFFAKLGICFLSPCQTNLVRSKYAQREAFTHSNIMSPKYSVGSPTSLQNQSIDFPIVIKPEKGYSSIGVQFICSKAELREYFNTKNNVYSDNFIVESVILGQEYSIEGYVRNGNAVALAKTVKFKTPLPFFEEIGHFCSREIKPSPLEKDFFIQVVRALDIHDCIFHLEYFQSNNKLIPVEIAGRLGGDKIPYLQRRVTGTSLVLSYLGIPHKFISTVTSGIGIVFFIPTEGGTVSSNFPSLDLSNNLQEHYVEVKPGQKVAAAPKDFFVRLGFSIVEANSMEEFISISNERISLFEKDSGVKLHRLISPNSKSLENERI
SIO_010081: D1093_RS09710
subclass of: SO_0000673
so part of: D1093_RS09710
location: complement(9343..10578)
location: region:9343-10578:-1
so has part: feature:9343-10578:-1:exon

WP_150222392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9343-10578:-1:exon

D1093_RS09715
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09715
old locus tag: D1093_09715
so part of: sequence
location: 10798..11955
location: region:10798-11955:1
so has part: feature:10798-11955:1:exon
subclass of: SO_0000010

position:10798:1
position: 10798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11955:1
position: 11955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10798-11955:1:exon

D1093_RS09715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09715
old locus tag: D1093_09715
inference: COORDINATES: protein motif:HMM:NF012382.2
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
translation: MVKVDSFISKTTLTDYEQVGFSIELNLADGHAYQECTDCQQKIVKRMSEIWHATEQQSILDTEESFIHCYGNLISSSGLSEVADSMILPTASNSIDLVASYLSHRNMKALLTYPTFDNLALLLHRRGVPIFPVTESELIDPIYLRKNLSKVDALFLVNPNNPTGTNLKEYEFIHIVEECKRANKIIIIDASFRLYYPQTWDSYKILNKTNSSYIIFEDTGKVFPTQDMKASLLSCSADHMFMLRELYNEIYLCVSKFTLGVLSEFFAEAFTGVSPLVNFHEIVALRRKFLRNKINEKHIDNNAKSSLIGVEWMRIPQFSLNDLDFVRKVQTLGVAVLPGRNFFWANVGSPETTNNFRISLMKPLGVFQQGVGILAEYLEHKGGGK
SIO_010081: D1093_RS09715
subclass of: SO_0000673
so part of: D1093_RS09715
location: 10798..11955
location: region:10798-11955:1
so has part: feature:10798-11955:1:exon

WP_150222395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10798-11955:1:exon

D1093_RS09720
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09720
old locus tag: D1093_09720
so part of: sequence
location: 11952..12917
location: region:11952-12917:1
so has part: feature:11952-12917:1:exon
subclass of: SO_0000010

position:11952:1
position: 11952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12917:1
position: 12917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11952-12917:1:exon

D1093_RS09720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09720
old locus tag: D1093_09720
inference: COORDINATES: protein motif:HMM:NF012607.2
GO function: GO:0051287 - NAD binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)-dependent oxidoreductase
translation: MKVLVSGIEVPIEILNYVNSCNGQVLTLTGENSKEELDQILPDTNFYLLGGNEYLDYELLYKTTELKVIVVLAAGASSFVDIEAANERGITVLNTPGANALAVAEFAVAQMLAMRRNLIGSVLNSMVRCRSQEVTNSRVGILGLGAIGYQVARILRSGFNCDVSYTSRSRKLDVEENLKITYVSLEELFNTTSTVIVCCDLNTQTEALISSSLFGRKARTIVGISDIRVFDILSIINNLKDGHLDAVALDVSLDLFSSCLPSKINRKELSYHGLYVTPHIAANSHEAWARMIAMGTDKLLQSMDSKENHYARKYYKGPETA
SIO_010081: D1093_RS09720
subclass of: SO_0000673
so part of: D1093_RS09720
location: 11952..12917
location: region:11952-12917:1
so has part: feature:11952-12917:1:exon

WP_150222397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11952-12917:1:exon

D1093_RS09725
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09725
old locus tag: D1093_09725
so part of: sequence
location: 12880..14250
location: region:12880-14250:1
so has part: feature:12880-14250:1:exon
subclass of: SO_0000010

position:12880:1
position: 12880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14250:1
position: 14250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12880-14250:1:exon

D1093_RS09725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09725
old locus tag: D1093_09725
inference: COORDINATES: protein motif:HMM:NF013714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MQENIIKAQRRLRDEIDPNNLIFPEEGEYENIRLAYNRMHDRRPMAIIQTLDVETLRAVLKIRRELGLNLAVRGRGHHIGGFSTIDNGILIDFSPFRGVKYNWASDLAIIQPGACLQDIDRQLEVHKRCIPAGTVSDTGITGLTLGGGIGWLVGSAGLTCDYLHSVRILLEDGELIEVNDKSHPELMSVCRGGGMGGFGLILELRFHTLPLKKITAGSIFFSQKDCVNVLNKLSKSHSKKQYSTVSMAPVLRKIYTGVELSVDLCSFGDDLSELNRLQSIIGGDWSNVKEVAYTDWQSNFDSDFLPPMRGYWKSVHFGSILPNSLVLKEICDKAPSSRCAVMIEFYNQRILQSKAINSCYPLRSSIVGVLVSARWEELSHDNLFISWVKQSANKLAIYGTVGEYSNYSSANETHLIKGYSIDKIKRFYELGQRYDPQQVFAHGHRSRIYRGECLNC
SIO_010081: D1093_RS09725
subclass of: SO_0000673
so part of: D1093_RS09725
location: 12880..14250
location: region:12880-14250:1
so has part: feature:12880-14250:1:exon

WP_150222399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12880-14250:1:exon

D1093_RS09730
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09730
old locus tag: D1093_09730
so part of: sequence
location: 14244..15641
location: region:14244-15641:1
so has part: feature:14244-15641:1:exon
subclass of: SO_0000010

position:14244:1
position: 14244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15641:1
position: 15641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14244-15641:1:exon

D1093_RS09730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09730
old locus tag: D1093_09730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLEKKLDVFTIARIYCPTAFQLIDVDSNLSLNDYALVTHNASQLKFVGSLVQEERKIFAECLYSEVEQHWGSQRAQRAYDEILQNPVIQTGPHYRLMFDNDFSSTMAFSIRGHELMGNDTNIMFTCSTVTLEEQARCGPAWLRIDDTSYRIFEMPRRQLAKKSVSEYQDDIALSSEVQSWLRRQFLKATFPEHLLNTKTAIVMHINNLNEYVFEQFRQGHNISTITLREPFFAVYAIELLERPSFMRRLIDDGRLVKLVELLKLESQGLWKNFIPTATDLFWLSVEGRVRPLQLRDGALYSDRFGVRIDFKTNSIVQNLRTGRLVPSLFFIFLSGSLLPRIRFLGGAYQVLYQEIFQKILLKILKMNVQDEQRLAKDILSTIVTAWGHNVVQKNVWNEVQKNNKGALRFSFKNWASPLSLMSSHYASFTQDLRWKDLTEKINTFCLKDQGLICPSIWKGISQCLL
SIO_010081: D1093_RS09730
subclass of: SO_0000673
so part of: D1093_RS09730
location: 14244..15641
location: region:14244-15641:1
so has part: feature:14244-15641:1:exon

WP_150222401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14244-15641:1:exon

D1093_RS09735
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09735
old locus tag: D1093_09735
so part of: sequence
location: 15629..16969
location: region:15629-16969:1
so has part: feature:15629-16969:1:exon
subclass of: SO_0000010

position:15629:1
position: 15629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16969:1
position: 16969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15629-16969:1:exon

D1093_RS09735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09735
old locus tag: D1093_09735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012231121.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO process: GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MATE family efflux transporter
translation: MFVVMKQLLSLGLPLAVGFISQMMISFTDAALVAHLGVQALSGTILALSMFSFVMLLGLGVITAVAPKLAESFRKQDRDALKAWFDQGIWLSLLIGMVSAIILLNTRNILCLLGQDEAIAHIAQEYNRGAAIGVVFFYLYVNSRGLLSAIGNPKPLTWVMLASIPMNFLISWLLIFGIGPASGLGVFGAGIASSLIRILIVMAVAIILSRNSTFSSFHFNYLRPKLEISRIIKLLLVGLPIGIRILIAEGFPSVIAFMIMAYGVEALAAHTIGIRLDMLISVVALGISSAAATIAAWYRADGNHMALKQLRMSVTVFAVAYVLFLSGVVYFSYEFILTTIFDISSDRVIVFSWALLPFVLLSFAFGILGAMLNGILVGLLDTFWPTIVVTISYWGVGLFGGALMAHFFKYGFMGYWLGMIGASLIVSLFNYMRVGYLIKSNSIFGV
SIO_010081: D1093_RS09735
subclass of: SO_0000673
so part of: D1093_RS09735
location: 15629..16969
location: region:15629-16969:1
so has part: feature:15629-16969:1:exon

WP_150222403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15629-16969:1:exon

D1093_RS10415
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS10415
old locus tag: D1093_09740
pseudo: true
so part of: sequence
location: <17029..17172
location: region:17029-17172:1
so has part: feature:17029-17172:1:exon
subclass of: SO_0000010

position:17029:1
position: 17029
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17172:1
position: 17172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17029-17172:1:exon

D1093_RS10415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS10415
old locus tag: D1093_09740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004857191.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: resolvase
SIO_010081: D1093_RS10415
subclass of: SO_0000673
so part of: D1093_RS10415
location: <17029..17172
location: region:17029-17172:1
so has part: feature:17029-17172:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17029-17172:1:exon

D1093_RS09745
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09745
old locus tag: D1093_09745
so part of: sequence
location: 17330..18022
location: region:17330-18022:1
so has part: feature:17330-18022:1:exon
subclass of: SO_0000010

position:17330:1
position: 17330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18022:1
position: 18022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17330-18022:1:exon

D1093_RS09745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09745
old locus tag: D1093_09745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005864560.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVITMCSTKGGVGKSTMALVLANVFAKAGSKVKLIDADPNQPLVTWMKRSMDTMPKNIEVSGNITEQNIVSCIDDAVERFPFVIVDLEGSANLAASFAIGRADLVLVPMRKKQLDGDQIGKIIALITQQSQFFKREIPFRIVFSMTNALNSREAQHIEKTLEKANIPILSASLTERGAYSALFQIGGSLFDLSSSDVNNPQAAQENATVFANAVVEILDRENLLKGKVA
SIO_010081: D1093_RS09745
subclass of: SO_0000673
so part of: D1093_RS09745
location: 17330..18022
location: region:17330-18022:1
so has part: feature:17330-18022:1:exon

WP_150222405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17330-18022:1:exon

D1093_RS09750
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09750
old locus tag: D1093_09750
so part of: sequence
location: 18019..18342
location: region:18019-18342:1
so has part: feature:18019-18342:1:exon
subclass of: SO_0000010

position:18019:1
position: 18019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18342:1
position: 18342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18019-18342:1:exon

D1093_RS09750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09750
old locus tag: D1093_09750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004857207.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKRAEIPLPNFENLQPFTKAQKVNEQELDKIGQKNGFTTRHSIEKTHTSGSGRRRRSLKTARLTLALEPTVKDKFWSLADDLNEDGGDFLNHLIENYINSNYTQNK
SIO_010081: D1093_RS09750
subclass of: SO_0000673
so part of: D1093_RS09750
location: 18019..18342
location: region:18019-18342:1
so has part: feature:18019-18342:1:exon

WP_150222408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18019-18342:1:exon

D1093_RS09755
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09755
old locus tag: D1093_09755
so part of: sequence
location: complement(18498..18806)
location: region:18498-18806:-1
so has part: feature:18498-18806:-1:exon
subclass of: SO_0000010

position:18498:-1
position: 18498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18806:-1
position: 18806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18498-18806:-1:exon

D1093_RS09755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09755
old locus tag: D1093_09755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005774617.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MQTKSQHLNDVSVGKKIRLRREMLKISQKQLGDLLGVTFQQIQKYEKATNRIGAGRLQEIADILEVDISFFYTDISPKKKFSYPDYEGISNKEEYFLLKGFR
SIO_010081: D1093_RS09755
subclass of: SO_0000673
so part of: D1093_RS09755
location: complement(18498..18806)
location: region:18498-18806:-1
so has part: feature:18498-18806:-1:exon

WP_150222410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18498-18806:-1:exon

D1093_RS09760
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09760
old locus tag: D1093_09760
so part of: sequence
location: 19674..20342
location: region:19674-20342:1
so has part: feature:19674-20342:1:exon
subclass of: SO_0000010

position:19674:1
position: 19674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20342:1
position: 20342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19674-20342:1:exon

D1093_RS09760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09760
old locus tag: D1093_09760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012755128.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTISKKYEFTNETKQVGDYTLYRIRSLRDFGSVKAGDLGGFIEKEANLSHDGNCWVGDNAWVYSDGRVYENAIICDNATVCGHVYGNAHVCGYARVYMNAHVYDNAHISYQAWVYHRAKVYGNAKLSGSARIHSNAEVYDHAAVSGASKIYGKVYGNASVGCHTNVYGSVYGNAKISGYFIIKGNVYGNANIKRQSRISLVPINCEVYESDNIVKTVASAA
SIO_010081: D1093_RS09760
subclass of: SO_0000673
so part of: D1093_RS09760
location: 19674..20342
location: region:19674-20342:1
so has part: feature:19674-20342:1:exon

WP_174767421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19674-20342:1:exon

D1093_RS09765
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09765
old locus tag: D1093_09765
so part of: sequence
location: complement(20436..20906)
location: region:20436-20906:-1
so has part: feature:20436-20906:-1:exon
subclass of: SO_0000010

position:20436:-1
position: 20436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20906:-1
position: 20906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20436-20906:-1:exon

D1093_RS09765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09765
old locus tag: D1093_09765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347973.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVDIDAIRQKITKEFNQLIPPNDPILMTVFLSDIMLDSALKTLHENQNQMINYILTARNAMVEEEKKTAGKLITEAATYINKEISEEINKNLNSISEQMRLYEISLSKISTVKSNIDENIERFFKKIKNYGILIGASLLANVLCFFALIIHYYIN
SIO_010081: D1093_RS09765
subclass of: SO_0000673
so part of: D1093_RS09765
location: complement(20436..20906)
location: region:20436-20906:-1
so has part: feature:20436-20906:-1:exon

WP_150222412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20436-20906:-1:exon

D1093_RS09770
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09770
old locus tag: D1093_09770
so part of: sequence
location: complement(20908..21633)
location: region:20908-21633:-1
so has part: feature:20908-21633:-1:exon
subclass of: SO_0000010

position:20908:-1
position: 20908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21633:-1
position: 21633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20908-21633:-1:exon

D1093_RS09770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09770
old locus tag: D1093_09770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347974.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraL
translation: MTNIHMTLQGKGGVGKSFVASLVMQYLLENKIDVKGIDTDPVNQTFANYKNFNVKHLKLLEQSVIIPRNFDILMEELLNSNCQYVIDNGATTFLPLAYYLKENEAFDLLATAKKNVIIHTIITGGQALADTLSGLFSICTQIPQTASIVVWKNEFFGPIIANGKNFEEMKIFEETKERISAIVTIPQQTSSTFGEDIKTMLDKKLTFNEITNSNEFSIMAKSRLARVKSMLFNQIDNIPGI
SIO_010081: D1093_RS09770
subclass of: SO_0000673
so part of: D1093_RS09770
location: complement(20908..21633)
location: region:20908-21633:-1
so has part: feature:20908-21633:-1:exon

WP_150222414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20908-21633:-1:exon

D1093_RS09775
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09775
old locus tag: D1093_09775
so part of: sequence
location: complement(21630..21941)
location: region:21630-21941:-1
so has part: feature:21630-21941:-1:exon
subclass of: SO_0000010

position:21630:-1
position: 21630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21941:-1
position: 21941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21630-21941:-1:exon

D1093_RS09775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09775
old locus tag: D1093_09775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347975.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraK family protein
translation: MEQKTKWGKMRIVFLANKDLILKSIEEGYSLKEILRRNPNLNISYDALASYVRKYFKKNFETTSPTLSVKTQSKEPTSAKPITTQQKSRTFIHDTNKKLEDMI
SIO_010081: D1093_RS09775
subclass of: SO_0000673
so part of: D1093_RS09775
location: complement(21630..21941)
location: region:21630-21941:-1
so has part: feature:21630-21941:-1:exon

WP_150222416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21630-21941:-1:exon

D1093_RS09780
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09780
old locus tag: D1093_09780
so part of: sequence
location: 22176..22505
location: region:22176-22505:1
so has part: feature:22176-22505:1:exon
subclass of: SO_0000010

position:22176:1
position: 22176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22505:1
position: 22505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22176-22505:1:exon

D1093_RS09780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09780
old locus tag: D1093_09780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraJ
translation: MTRPRKFRLSVWCTFEEKETIEENARQTGLSISTYLRTVGRLEPVKTHIDYDAIKDLTKLQGDLGRVAGLLKLWLVTNNGKGGVPNDINQMMISFRELQKQIFEKVSTL
SIO_010081: D1093_RS09780
subclass of: SO_0000673
so part of: D1093_RS09780
location: 22176..22505
location: region:22176-22505:1
so has part: feature:22176-22505:1:exon

WP_150222418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22176-22505:1:exon

D1093_RS09785
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09785
old locus tag: D1093_09785
so part of: sequence
location: 22502..24385
location: region:22502-24385:1
so has part: feature:22502-24385:1:exon
subclass of: SO_0000010

position:22502:1
position: 22502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24385:1
position: 24385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22502-24385:1:exon

D1093_RS09785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09785
old locus tag: D1093_09785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347977.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIAKRVERKKTTSNMVRLARYIMDLDGGVLPRDWKLTSDYILDDNIQNSKKVASVRVTNCHTDDPVMATEFILKTQEQNKKSKSDKTYHLVLSFPDGEIPEKHTLYEIEDKFCSALGYENHQRISAIHKDTDNLHIHIAINKVNPENFRNYEPFFDKRTLMKTCQKIEQEYNLIKTPHGLECEIENIKYPKTKDFEYRTGVESLSTYVGKIAKELNYTDWLTLHKSFANYGLVIKKRGSGLIIGAPDLDLWVKASSCNRTLSLRALEQKLGPYEDFKPIIQKQYVPTLHGKNSKTKTRLYSRYEEQKNASNLERQKKYQILRTQKSAFYNQLFIWYKQQSSLLRLMPKSSRAGLRNTLKLQKSLRQQELRKKQAIAKRKLAETRFPNWFDWLHQQANIGDKDAMDVLHSMNERRAILSDNLLTAKTARKTGVLLRRNLKPSFLKNGNVLYKSIDGGTIIDTGEKIHAQKFTTGSAYLALILAVEKFKDQPLVLNGTEEFKKGVAQLAGIYNMNVEFDDPILNSLKNEVKQHNRDNIDNSLQEWIEERNKYTGNLPHVAWNGEESVFKYVGRRKIREKNLLLFEDNQRIFVKETTKRGFVQAGYWKKGIKVKITKNSVKNLSDKERET
SIO_010081: D1093_RS09785
subclass of: SO_0000673
so part of: D1093_RS09785
location: 22502..24385
location: region:22502-24385:1
so has part: feature:22502-24385:1:exon

WP_150222420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22502-24385:1:exon

D1093_RS09790
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09790
old locus tag: D1093_09790
so part of: sequence
location: 24547..25224
location: region:24547-25224:1
so has part: feature:24547-25224:1:exon
subclass of: SO_0000010

position:24547:1
position: 24547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25224:1
position: 25224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24547-25224:1:exon

D1093_RS09790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09790
old locus tag: D1093_09790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347978.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB8/TrbF family protein
translation: MKTSKDSIKDKPSNPYIIARKEWMERYGDYINSANNWRLATFGMIIITAMSVGAFIWKSNEETIIPYIVQTNSVGEVTHLSKANVATKPNATHIRAALRNWLIGARTVYVDMRAEEDLINQTYSMTLPQSPAYAMLVEYHKQNDPYSRAAMETVEIQVNAIVPVSDDTWQIEWTEKKRARSGAIIDTKLWQATATVILAIPKTEKQIMVNPIGLYVKQFAWTPRL
SIO_010081: D1093_RS09790
subclass of: SO_0000673
so part of: D1093_RS09790
location: 24547..25224
location: region:24547-25224:1
so has part: feature:24547-25224:1:exon

WP_150222422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24547-25224:1:exon

D1093_RS09795
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: trbG
locus tag: D1093_RS09795
old locus tag: D1093_09795
so part of: sequence
location: 25398..26141
location: region:25398-26141:1
so has part: feature:25398-26141:1:exon
subclass of: SO_0000010

position:25398:1
position: 25398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26141:1
position: 26141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25398-26141:1:exon

D1093_RS09795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: trbG
locus tag: D1093_RS09795
old locus tag: D1093_09795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004167168.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MANQWKNNPRRPIYSGDGSIKYLYGATLPTLVCTPLEVCTIQLQVGETINSLHAGDTVRWKISPTVSGTGTTSTTYVVVKPIDAGLTTNLFITTDRRTYMIKLASTQSSSIPLLSFVYPDDTDQDWAAYKAATDKSRTTLPTGQNLAALDFNFRITISDRRIKWYPRRVYTDGFKTYIELPSDGVRGTAPALIAIGDDGGFSKKPSERLINYRMIGNRYVVDAVINKVALVSGVGNSQQRVTIIRGR
SIO_010081: D1093_RS09795
subclass of: SO_0000673
so part of: D1093_RS09795
location: 25398..26141
location: region:25398-26141:1
so has part: feature:25398-26141:1:exon

WP_244614052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25398-26141:1:exon

D1093_RS09800
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09800
old locus tag: D1093_09800
so part of: sequence
location: 26143..26604
location: region:26143-26604:1
so has part: feature:26143-26604:1:exon
subclass of: SO_0000010

position:26143:1
position: 26143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26604:1
position: 26604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26143-26604:1:exon

D1093_RS09800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09800
old locus tag: D1093_09800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347980.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKYLLLLPLVLTVGCTSIGHRSSLLVNYVDQNVTENDANLITGDFVRYLRDPFPPATTTFIVKTNDTEDKFTSLLVNLLQKNGYGVIYTDQPEKHKNKGINLTYKVMPLDQGIVLVAQYDSTEITRYYVRLKTGNIVPSAPFIARVDDGGKG
SIO_010081: D1093_RS09800
subclass of: SO_0000673
so part of: D1093_RS09800
location: 26143..26604
location: region:26143-26604:1
so has part: feature:26143-26604:1:exon

WP_150222426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26143-26604:1:exon

D1093_RS09805
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09805
old locus tag: D1093_09805
so part of: sequence
location: 26601..27899
location: region:26601-27899:1
so has part: feature:26601-27899:1:exon
subclass of: SO_0000010

position:26601:1
position: 26601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27899:1
position: 27899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26601-27899:1:exon

D1093_RS09805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09805
old locus tag: D1093_09805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347981.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MKNNQQISPSESPDFFSTKTKGRGVRRLNNIPLIGAIGIIVFALVGITYTFMLRQQSNNVAVEDKKKLFVDEIPLPIRPEGDDYVQAKGPELPLEPIKTTETKQLAKADTNSEQKQIDKTVDEEDELQKRLLTRVLERRLAKMEAALDSDPTVSFTINSEVKNQSQVQDTYPQKATLENLFGRSGLSANSSLYNGNGANDPNMQSQKIAFLSQSPEAEVYLKNTRQEAIRASLEIKAGTIIPSIMISGINSDLPGQIIAQVRESVYDSATGQNVLIPLGSKLIGTYDSRVSTGQKRALIAWSRVIYPDGSSLSLGNMPGTDQSGYAGFKDKVNNHYFKIFGNAFLLSIISGASQLSQKTHNAGNDDSKIATAKETLAAELGRQWGEVGIEMTRKNLGIQPTIIIRPGYNFNVMVTKDIILPAWQGHPMAALP
SIO_010081: D1093_RS09805
subclass of: SO_0000673
so part of: D1093_RS09805
location: 26601..27899
location: region:26601-27899:1
so has part: feature:26601-27899:1:exon

WP_150222428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26601-27899:1:exon

D1093_RS09810
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09810
old locus tag: D1093_09810
so part of: sequence
location: 28142..28705
location: region:28142-28705:1
so has part: feature:28142-28705:1:exon
subclass of: SO_0000010

position:28142:1
position: 28142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28705:1
position: 28705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28142-28705:1:exon

D1093_RS09810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09810
old locus tag: D1093_09810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347984.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALLGYARVSTNQQKLALQIIELKKAGVREDRIFTDIRTGSTDKREGLQRLLWRAERDDTILCTKMDRLGRNTADMISIVDSCYKKGVFIRFLENGLSTEGTMGKMVIQILAAVAEAERARILERTNEGRNAAMKAGIVKFGRKPHPKTELMKSLIKQGVSFKIIKEKTDVSRSTYFRLKRQISLKN
SIO_010081: D1093_RS09810
subclass of: SO_0000673
so part of: D1093_RS09810
location: 28142..28705
location: region:28142-28705:1
so has part: feature:28142-28705:1:exon

WP_150222430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28142-28705:1:exon

D1093_RS09815
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09815
old locus tag: D1093_09815
so part of: sequence
location: 28775..29080
location: region:28775-29080:1
so has part: feature:28775-29080:1:exon
subclass of: SO_0000010

position:28775:1
position: 28775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29080:1
position: 29080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28775-29080:1:exon

D1093_RS09815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09815
old locus tag: D1093_09815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347985.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKKLPRSYMTDAEREELRAGGLDQDGIYTAESEAADYAGDGNAAWEWLAMTEPPAHTLLFLRSERGAQFIRDMGFSTKKADEKYGPDWLDKGVMIGGDYF
SIO_010081: D1093_RS09815
subclass of: SO_0000673
so part of: D1093_RS09815
location: 28775..29080
location: region:28775-29080:1
so has part: feature:28775-29080:1:exon

WP_144755212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28775-29080:1:exon

D1093_RS09820
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09820
old locus tag: D1093_09820
so part of: sequence
location: 29172..29630
location: region:29172-29630:1
so has part: feature:29172-29630:1:exon
subclass of: SO_0000010

position:29172:1
position: 29172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29630:1
position: 29630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29172-29630:1:exon

D1093_RS09820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09820
old locus tag: D1093_09820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398784.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWNELYDHVCDVGRSNNLSLLISTEQKIVKNDLFRYTNSKSMAGSLRTALAEIDVIKDHVMIVSDPKQYDIINRGHNLPKLRKNGLPYDGARRAMASHYTRLGNLDKGRLTDIEKSILDIRRDNMKVMRKIYEKMQAKAIGIDLSRDKGHSL
SIO_010081: D1093_RS09820
subclass of: SO_0000673
so part of: D1093_RS09820
location: 29172..29630
location: region:29172-29630:1
so has part: feature:29172-29630:1:exon

WP_244614053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29172-29630:1:exon

D1093_RS09825
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09825
old locus tag: D1093_09825
so part of: sequence
location: 29705..31651
location: region:29705-31651:1
so has part: feature:29705-31651:1:exon
subclass of: SO_0000010

position:29705:1
position: 29705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31651:1
position: 31651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29705-31651:1:exon

D1093_RS09825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09825
old locus tag: D1093_09825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398785.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MGGKLGNQSTHIPKRKSRLIFIFFFILYFIVLNQFCTQYLARIFHYSVSLGSNFKGVYSPFSWLFWIFKFYENAPTQCNIIFVIFCVGFLIGLIGFTLWAGLSSRSNKSTDDLHGTAHFATFNEIQEMGLIPHKQKGKGVYCGAFADPKTGMLHYLRHDGPEHIAVLAPTRSGKGVGLVVPTLLSWPHSLFVLDTKGENYAMTAGWRKQCAGNKILRFDPAEPNVGCSWNPLGEIRFRTRYQVADAQNIALMVIDDDGKGIAGDHFRSAAFELLNGLILHALYKAEKTGRIPCLQDCAHMLTGVGDFAAVTEDNDDFDDDGDPKALSSLFHEMENLDIKSNNPSFKDADREVKLVINGVGRRMAGTPARELGSIISTANNALSLYRDPIVGENTKYCDFYISDLMDTETPVSLYFITTPRNLDRMRPLARLLLTQMVLSLSDRMEFDDGRSKTNHKHRLLLMLDEFPTLGKLDIFEKALAYIAGYGLKAYIITQDVQQLYKAYTTNESIISNCHIRIAYAPNKVETAEWMSKMAGETTVVREKISTSGKRFGMALEQVSTSYEETKRPLMTPDEIMRLPGAKKDNAGNIVEPGEMLIFVAGNSVIRGTQILYFLDPIFSERSKISPPVTDLLHQRNEIKKDQEGFVLS
SIO_010081: D1093_RS09825
subclass of: SO_0000673
so part of: D1093_RS09825
location: 29705..31651
location: region:29705-31651:1
so has part: feature:29705-31651:1:exon

WP_150222432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29705-31651:1:exon

D1093_RS09830
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: traF
locus tag: D1093_RS09830
old locus tag: D1093_09830
so part of: sequence
location: 31660..32166
location: region:31660-32166:1
so has part: feature:31660-32166:1:exon
subclass of: SO_0000010

position:31660:1
position: 31660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32166:1
position: 32166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31660-32166:1:exon

D1093_RS09830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: traF
locus tag: D1093_RS09830
old locus tag: D1093_09830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347988.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer signal peptidase TraF
translation: MSIITLCSLAIGCLILFALSQGFRINYSHSAPIGIWKVNYFQKEMRTGKFMEVCPPDVPIVKVFVEKGYLQSGACSSGAIPFLKPLVAVSGDVVQVTERGISINGHLLKNSQKNGGVAGVPNGEYHVAEGYAWFISSFDPVSFDSRYFGAVPITNIMGSAKPILTFQN
SIO_010081: D1093_RS09830
subclass of: SO_0000673
so part of: D1093_RS09830
location: 31660..32166
location: region:31660-32166:1
so has part: feature:31660-32166:1:exon

WP_244614054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31660-32166:1:exon

D1093_RS09835
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09835
old locus tag: D1093_09835
so part of: sequence
location: 32177..32353
location: region:32177-32353:1
so has part: feature:32177-32353:1:exon
subclass of: SO_0000010

position:32177:1
position: 32177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32353:1
position: 32353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32177-32353:1:exon

D1093_RS09835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09835
old locus tag: D1093_09835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398787.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MKKTRVKVVPILSSAVNDAFIPGVQIPLSLEEAESYGVFSETALSEEDAWDSCATDFS
SIO_010081: D1093_RS09835
subclass of: SO_0000673
so part of: D1093_RS09835
location: 32177..32353
location: region:32177-32353:1
so has part: feature:32177-32353:1:exon

WP_150222437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32177-32353:1:exon

D1093_RS09840
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09840
old locus tag: D1093_09840
so part of: sequence
location: 32389..34851
location: region:32389-34851:1
so has part: feature:32389-34851:1:exon
subclass of: SO_0000010

position:32389:1
position: 32389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34851:1
position: 34851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32389-34851:1:exon

D1093_RS09840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09840
old locus tag: D1093_09840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MSFEYAKTVTDYFITQLQQGIAPWQQALPPGCARSPYNPQTGKKYSGINSLWLASQKYTDPRWLTYQQANEMGCRIKKGMKSTNIIYWKQDEKTSFYDEDGKKYETLKKLSEPRIFLAKVFNAKQIDGLPQLEPRPILSEEIRYARAEALLAASGAKIDSGDRKHAFYRGGDIDTLFLPETKQFDSKDSFYATALHELGHWTGHISRLNRDMTYPIGSSGYAKEKLRTTIASFLIGEELSIGYDPVNNVSYVSSWIEVMQNNPKEIFRAAFEAEKIKNFIMGLENIKVIDVEKESSVSVNYDHKADNSEKIFLNVPYSQKEEAKKLGAKWDKDVKSWYVPAGTNLVKKGLDRFSHDNSKSNTVLSVEQQFKEALHSAGLIVENPLMDGKLHRVSVENDKKNQKSGAYIGYPSLGGGYIQNFRLGEKIYWKPEKVISSLSLEEKKRLAAEVKERQEILEKEITEKQNNTAILASQIWKASKIATQDNEYCKLKGINQTSDLREVPDDFPEDIKKQGVRVAKSVEQAKIIKKNNPNIRTFLTGDLIIPLWDKDNNLSTLQMVNPTFKSFMKDGKKHECFTIVGSNNVGISALNNDLENPILIAEGYATASAVAQITHMPVVAAFDSGNLKNVGRVIRDKYPDRIILFVADNDHATQEKLLSNGKKGINVGITAAYNAAVDVGGGVVYPEFKKEVKDFSDWDDYKRIHGSDKSRKDFTSKMKIAEIEARVMAERLQTLANMQDQFAIDDPTTALDDQYIYEERDAANQLRQRAATLNGRNINLSDKAMISRVRSHILQDREQKLSQNPNTASYRERKNQENEI
SIO_010081: D1093_RS09840
subclass of: SO_0000673
so part of: D1093_RS09840
location: 32389..34851
location: region:32389-34851:1
so has part: feature:32389-34851:1:exon

WP_150222439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32389-34851:1:exon

D1093_RS09845
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09845
old locus tag: D1093_09845
so part of: sequence
location: 34925..35230
location: region:34925-35230:1
so has part: feature:34925-35230:1:exon
subclass of: SO_0000010

position:34925:1
position: 34925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35230:1
position: 35230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34925-35230:1:exon

D1093_RS09845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09845
old locus tag: D1093_09845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347985.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKKLPKSYMTDAEREELRVGGLDQDCIYMVEAEAASKANDSKTTWEWLAMAEYPAHALLLLRHQRGPQFIRDMGFSTKNADEEYGPDWLDKGVVIGGHHF
SIO_010081: D1093_RS09845
subclass of: SO_0000673
so part of: D1093_RS09845
location: 34925..35230
location: region:34925-35230:1
so has part: feature:34925-35230:1:exon

WP_150222441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34925-35230:1:exon

D1093_RS09850
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09850
old locus tag: D1093_09850
so part of: sequence
location: 35436..35765
location: region:35436-35765:1
so has part: feature:35436-35765:1:exon
subclass of: SO_0000010

position:35436:1
position: 35436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35765:1
position: 35765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35436-35765:1:exon

D1093_RS09850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09850
old locus tag: D1093_09850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007348012.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISSLKTALTEMDVVKKHVVLVSDPIQYKVINEAYSLSKNRKGGLPYDEARQAMASHYTRLGNLDKARLTSVEKSIIDVRRDNMKVMRKIYEKMQAKAIDLSRDKGHSL
SIO_010081: D1093_RS09850
subclass of: SO_0000673
so part of: D1093_RS09850
location: 35436..35765
location: region:35436-35765:1
so has part: feature:35436-35765:1:exon

WP_150222443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35436-35765:1:exon

D1093_RS09855
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: trbB
locus tag: D1093_RS09855
old locus tag: D1093_09855
so part of: sequence
location: 35948..36922
location: region:35948-36922:1
so has part: feature:35948-36922:1:exon
subclass of: SO_0000010

position:35948:1
position: 35948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36922:1
position: 36922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35948-36922:1:exon

D1093_RS09855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: trbB
locus tag: D1093_RS09855
old locus tag: D1093_09855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MAVTAFKGGRSSEQNRRLIEKMRFEFGQQVWDYLDDPTIIEIMLNPDGTLWVEHLGEPKKAVGVMDAHRAEAVMGTVATALGTQITKENPILECELPMNGSRFEAVIPPIVSAPTFTIRKKATKIFTLDDYVAKNIITPHQKSLLSEAVKNHKNILVVGGTGTGKTTLTNAILKEMTDTCPEERFVIIEDTAELQCAAPNTVTFRAVEYIDMTRLLKVTMRMAPDRIIVGEVRDGAALALLKSWNTGHPGGIATVHANDATAGLTRIQQLISEATIAPMQSLIAETIDVVLSIEKTSLGRKVKEIIEVCGYDHAINKYITNLIH
SIO_010081: D1093_RS09855
subclass of: SO_0000673
so part of: D1093_RS09855
location: 35948..36922
location: region:35948-36922:1
so has part: feature:35948-36922:1:exon

WP_150222445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35948-36922:1:exon

D1093_RS09860
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09860
old locus tag: D1093_09860
so part of: sequence
location: 36934..37332
location: region:36934-37332:1
so has part: feature:36934-37332:1:exon
subclass of: SO_0000010

position:36934:1
position: 36934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37332:1
position: 37332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36934-37332:1:exon

D1093_RS09860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09860
old locus tag: D1093_09860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347992.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MQLFSMQTRNNLYNHIVLFFLIIGAVFFLYIILGDIAYASDATSGGGASLPWEAPMEKLRKSIAGPVAFGVSLLGLVAGGAALIFGGEISEFTKRIIYLVLVISVIVFANTLLTGALFSGAVVPSNVLVGGV
SIO_010081: D1093_RS09860
subclass of: SO_0000673
so part of: D1093_RS09860
location: 36934..37332
location: region:36934-37332:1
so has part: feature:36934-37332:1:exon

WP_150222447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36934-37332:1:exon

D1093_RS09865
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: trbD
locus tag: D1093_RS09865
old locus tag: D1093_09865
so part of: sequence
location: 37332..37637
location: region:37332-37637:1
so has part: feature:37332-37637:1:exon
subclass of: SO_0000010

position:37637:1
position: 37637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37332-37637:1:exon

D1093_RS09865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: trbD
locus tag: D1093_RS09865
old locus tag: D1093_09865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347993.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbD
translation: MGGKRYTQLFRSLHRPQQIMGGERELMLLSMLLTGILIVSAMNIIAAIIGICIWFVSLYVLRRMAKFDPILSRIYIRQLKYRSYYAPFSRPFRVAKSTRTY
SIO_010081: D1093_RS09865
subclass of: SO_0000673
so part of: D1093_RS09865
location: 37332..37637
location: region:37332-37637:1
so has part: feature:37332-37637:1:exon

WP_150222448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37332-37637:1:exon

D1093_RS09870
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
locus tag: D1093_RS09870
old locus tag: D1093_09870
so part of: sequence
location: 37637..40141
location: region:37637-40141:1
so has part: feature:37637-40141:1:exon
subclass of: SO_0000010

position:40141:1
position: 40141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37637-40141:1:exon

D1093_RS09870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
locus tag: D1093_RS09870
old locus tag: D1093_09870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter
translation: MLKLKPFRSTIAGLPDLLNFAALIDEGIILGKDGSLLAGFFIRGDDPMSATDTERNYITGLVNTYLSRFHSGWAIWVDAIRIESPSYSDPELSHFPDPITALIDAERRFYFKQSEVHYETEYALLMQYLPPTRKSSKLGEIVYEDDTVESTTPAERLLDEFKKKIDDFYIGIGDLLKMQRMKTITIKNGDDVYDSDQLVNYLHYAINGEAIALRIPDCPMYLDSWLGYTDLWPGDIPRLGDKFISCISIDGFPTASYPGILDILDGFPLHYRWSSRFIFMDQHEAVAALNKYRLKWQQKVRGFFSQVFKTNKGTINTDALLMAQQAETAMNEARSGIVAYGYYSPTIVLMHEDREILAENARLIKREIEHKGFAARIETVNTMEAWLGTIAGQTYPNIRRPLINTQNLADMLPLSSVWPGLQFNPCPLYPDNSPALSQVVTTGATPFRVNLHVDDVGHTLVFGPTGAGKSTLLAFLLAQARRYWSRATDKDGKHLPANITAFDKGRSLYALCYAIDGRHYDIGDSDSAVGALMPLADIDTEADNLWAQEWIAVCYELQTGQAPSPQQKMEIHRAMQQMSKTPKNMRSLSNFVTTIQNQEIRDALAHYTISGAMGHLLDGQEQFEDHNDFIVYEIDELMKLGDKNGLPVLLYLFRRFERSLKGQPSILSLDEAWIMLGHPVFREKIREWLKELRKKNCLVIMATQSLSDAVRSGILDVLLEQCPTKILLPNEEAETKGAEGTPGAVDLYRMIGLNDKEIQIIKTAKKKRQYYYKSILGRRLFELGLGDVALSFVAISNKEDLVEVKKLINEDAKNWPFKWLQMRGVNYEKYLEET
SIO_010081: D1093_RS09870
subclass of: SO_0000673
so part of: D1093_RS09870
location: 37637..40141
location: region:37637-40141:1
so has part: feature:37637-40141:1:exon

WP_150222450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37637-40141:1:exon

D1093_RS09875
type: Gene
subclass of: SO_0000704
RO_0002162: 2133959
gene: trbJ
locus tag: D1093_RS09875
old locus tag: D1093_09875
so part of: sequence
location: 40116..40874
location: region:40116-40874:1
so has part: feature:40116-40874:1:exon
subclass of: SO_0000010

position:40116:1
position: 40116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40874:1
position: 40874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40116-40874:1:exon

D1093_RS09875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133959
gene: trbJ
locus tag: D1093_RS09875
old locus tag: D1093_09875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005864540.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKNILKRLKFFSVISTFIIINFIILITPVKALVPVTCTNCSNLLTQALEYAKDVEIALNTAEQVAVEIKQYKDMIEQAKTLDSISVERFENDLKLLNRTYQDAKIIAYNMQNLHSKFKERYPGYENFLKKIGKKSPIEDFRKWAENGFSNARIAIEAAGINISSFVKENNFMRTLINRSATAKGRMQAIQAGNEIATQQVKQLQMLRELVANNITLQANYTADEVERKAKDEANVEKFFETKSPDTDRGHAF
SIO_010081: D1093_RS09875
subclass of: SO_0000673
so part of: D1093_RS09875
location: 40116..40874
location: region:40116-40874:1
so has part: feature:40116-40874:1:exon

WP_150222452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40116-40874:1:exon