Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence.
Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
Complete Genome Sequence of Spiroplasma citri strain R8-A2
Submitted (01-OCT-2015) United States Department of Agriculture, Agricultural Research Service, Molecular Plant Pathology, 10300 Baltimore Avenue, Beltsville, MD 20705, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP013199.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3\nGenome Coverage :: 244.45x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 08:56:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,150\nCDSs (total) :: 2,112\nGenes (coding) :: 2,057\nCDSs (with protein) :: 2,057\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 31 of 55\nPseudo Genes (incomplete) :: 24 of 55\nPseudo Genes (internal stop) :: 20 of 55\nPseudo Genes (multiple problems) :: 18 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015988083.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004027613.1
COORDINATES: similar to AA sequence:RefSeq:WP_015967971.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015979232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004027792.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028247.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01547.1
PBSX family phage terminase large subunit
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_004028274.1
COORDINATES: protein motif:HMM:NF012670.2
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF014798.2
transketolase C-terminal domain-containing protein