Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence.
type: Entry
definition: Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence.
sequence version: NZ_CP013199.1
sequence date: 2023-04-09
sequence: sequence
division: CON
label: NZ_CP013199.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04110376
keyword: RefSeq
source: Spiroplasma citri
organism: Spiroplasma citri
taxonomy: Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013199.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3\nGenome Coverage :: 244.45x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 08:56:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,150\nCDSs (total) :: 2,112\nGenes (coding) :: 2,057\nCDSs (with protein) :: 2,057\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 31 of 55\nPseudo Genes (incomplete) :: 24 of 55\nPseudo Genes (internal stop) :: 20 of 55\nPseudo Genes (multiple problems) :: 18 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14987
topology: circular
so has quality: SO_0000988
location: 1..14987
location: region:1-14987:1
RO_0002162: 2133

NZ_CP013199
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04110376
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Spiroplasma citri strain R8-A2
author: Davis, R.E.
author: Shao, J.
author: Gasparich, G.
author: Gaynor, B.
author: Donofrio, N.
journal: Unpublished

2
title: Direct Submission
author: Davis, R.E.
author: Shao, J.
author: Gasparich, G.
author: Gaynor, B.
author: Donofrio, N.
journal: Submitted (01-OCT-2015) United States Department of Agriculture, Agricultural Research Service, Molecular Plant Pathology, 10300 Baltimore Avenue, Beltsville, MD 20705, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14987:1
position: 14987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14987:1:source
so part of: sequence
organism: Spiroplasma citri
mol type: genomic DNA
strain: R8-A2
isolation source: Navel
host: Citrus sinensis
culture collection: ATCC:27556
type material: type strain of Spiroplasma citri
plasmid: pSCI15
country: Morocco
collection date: 1971-06

2133
type: Taxonomy
SIO_000068: taxonomy

SCITRI_RS09475
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09475
old locus tag: SCITRI_001971
so part of: sequence
location: complement(join(14912..14987,1..275))
location: region:1-14987:-1
so has part: feature:1-275:-1:exon
so has part: feature:14912-14987:-1:exon
subclass of: SO_0000010

54239767
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14987:-1
position: 14987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-275:-1:exon

position:275:-1
position: 275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14912-14987:-1:exon

position:14912:-1
position: 14912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SCITRI_RS09475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09475
old locus tag: SCITRI_001971
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015988083.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MINLLVENNNSNWDKIFSFVFDIFLFIFDVIWNTKLPMTNTSIAYFFFFMVIKLSIYAIHGTSTQYNNLGSTVNNGVSQVYSSTVRKGINVGNQVGIIHLLSKNIATRFACSLRSK
SIO_010081: SCITRI_RS09475
subclass of: SO_0000673
so part of: SCITRI_RS09475
location: complement(join(14912..14987,1..275))
location: region:1-14987:-1
so has part: feature:1-275:-1:exon
so has part: feature:14912-14987:-1:exon

WP_157092898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-275:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14912-14987:-1:exon

SCITRI_RS10450
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS10450
old locus tag: SCITRI_001972
so part of: sequence
location: complement(353..613)
location: region:353-613:-1
so has part: feature:353-613:-1:exon
subclass of: SO_0000010

54239932
type: Gene
SIO_000068: ncbigene

position:353:-1
position: 353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613:-1
position: 613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353-613:-1:exon

SCITRI_RS10450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS10450
old locus tag: SCITRI_001972
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRIGIFQDITDYEIWKTKSVERTAEGKRVKHKSDIGLGIRFFKIIIPLEFANKYDSQWLKFVRDLKNDEIVNKKRILLVRNHKIKR
SIO_010081: SCITRI_RS10450
subclass of: SO_0000673
so part of: SCITRI_RS10450
location: complement(353..613)
location: region:353-613:-1
so has part: feature:353-613:-1:exon

WP_167693729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353-613:-1:exon

SCITRI_RS10455
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS10455
old locus tag: SCITRI_001973
so part of: sequence
location: complement(770..1123)
location: region:770-1123:-1
so has part: feature:770-1123:-1:exon
subclass of: SO_0000010

54239933
type: Gene
SIO_000068: ncbigene

position:770:-1
position: 770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1123:-1
position: 1123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:770-1123:-1:exon

SCITRI_RS10455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS10455
old locus tag: SCITRI_001973
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIVKNIFYQLNSFGLVNFVWDNPLSVIIGKLGTGKTLLLTYLSQTMKLLTDEIYSNYPLKDDKVKVLTFKNLDFTDRTKPVPLDDSVILFDEIIYILTELVLTMKKKFIVVKYRELF
SIO_010081: SCITRI_RS10455
subclass of: SO_0000673
so part of: SCITRI_RS10455
location: complement(770..1123)
location: region:770-1123:-1
so has part: feature:770-1123:-1:exon

WP_167693730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:770-1123:-1:exon

SCITRI_RS10460
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS10460
so part of: sequence
location: complement(1093..1281)
location: region:1093-1281:-1
so has part: feature:1093-1281:-1:exon
subclass of: SO_0000010

54239934
type: Gene
SIO_000068: ncbigene

position:1093:-1
position: 1093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1281:-1
position: 1281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1093-1281:-1:exon

SCITRI_RS10460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS10460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKFIFFFKNYCYISGSMLLFSLIDLLLWIISLYCVGLVFWILFALQCVYFVWWLWKIFFIS
SIO_010081: SCITRI_RS10460
subclass of: SO_0000673
so part of: SCITRI_RS10460
location: complement(1093..1281)
location: region:1093-1281:-1
so has part: feature:1093-1281:-1:exon

WP_157092897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1093-1281:-1:exon

SCITRI_RS09485
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09485
old locus tag: SCITRI_001974
so part of: sequence
location: complement(1475..1678)
location: region:1475-1678:-1
so has part: feature:1475-1678:-1:exon
subclass of: SO_0000010

54239768
type: Gene
SIO_000068: ncbigene

position:1475:-1
position: 1475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1678:-1
position: 1678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1475-1678:-1:exon

SCITRI_RS09485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09485
old locus tag: SCITRI_001974
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004027613.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF2649 family protein
translation: MQNDLIKLKEFFIHIFLFIDKTNVESITMWNLTQNEYLTLMVGVWVVILFLTWFFLWMVFKIVSYFK
SIO_010081: SCITRI_RS09485
subclass of: SO_0000673
so part of: SCITRI_RS09485
location: complement(1475..1678)
location: region:1475-1678:-1
so has part: feature:1475-1678:-1:exon

WP_071937329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1475-1678:-1:exon

SCITRI_RS09490
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09490
pseudo: true
so part of: sequence
location: complement(1830..2280)
location: region:1830-2280:-1
so has part: feature:1830-2280:-1:exon
subclass of: SO_0000010

54239769
type: Gene
SIO_000068: ncbigene

position:1830:-1
position: 1830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2280:-1
position: 2280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1830-2280:-1:exon

SCITRI_RS09490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015967971.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: DUF3627 domain-containing protein
SIO_010081: SCITRI_RS09490
subclass of: SO_0000673
so part of: SCITRI_RS09490
location: complement(1830..2280)
location: region:1830-2280:-1
so has part: feature:1830-2280:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1830-2280:-1:exon

SCITRI_RS09495
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09495
old locus tag: SCITRI_001978
so part of: sequence
location: complement(2264..2623)
location: region:2264-2623:-1
so has part: feature:2264-2623:-1:exon
subclass of: SO_0000010

54239770
type: Gene
SIO_000068: ncbigene

position:2264:-1
position: 2264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2623:-1
position: 2623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2264-2623:-1:exon

SCITRI_RS09495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09495
old locus tag: SCITRI_001978
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015979232.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDIKFKTTKECKKLKRDFIIRNFVFGFVYFQFFIVLIEIIVGLVLFSNREIIVGILLFSLFLFLIFILLFFIIQCHICEIKEYKVMLLKKKMLPLENKIGGLGKGTMLRPVRRGDDKIE
SIO_010081: SCITRI_RS09495
subclass of: SO_0000673
so part of: SCITRI_RS09495
location: complement(2264..2623)
location: region:2264-2623:-1
so has part: feature:2264-2623:-1:exon

WP_071937331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2264-2623:-1:exon

SCITRI_RS09500
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09500
old locus tag: SCITRI_001979
so part of: sequence
location: complement(3006..3257)
location: region:3006-3257:-1
so has part: feature:3006-3257:-1:exon
subclass of: SO_0000010

54239771
type: Gene
SIO_000068: ncbigene

position:3006:-1
position: 3006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3257:-1
position: 3257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3006-3257:-1:exon

SCITRI_RS09500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09500
old locus tag: SCITRI_001979
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004027792.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLGMYLTTAFNFLTAPTPKTMSEGMTGIWTGLTSALWKVKECITNILPEIMIFLGEAWIILIPFAIFCIIKILNFFRVMVKGF
SIO_010081: SCITRI_RS09500
subclass of: SO_0000673
so part of: SCITRI_RS09500
location: complement(3006..3257)
location: region:3006-3257:-1
so has part: feature:3006-3257:-1:exon

WP_071937332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3006-3257:-1:exon

SCITRI_RS09510
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09510
old locus tag: SCITRI_001980
so part of: sequence
location: complement(3511..4338)
location: region:3511-4338:-1
so has part: feature:3511-4338:-1:exon
subclass of: SO_0000010

54239773
type: Gene
SIO_000068: ncbigene

position:3511:-1
position: 3511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4338:-1
position: 4338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3511-4338:-1:exon

SCITRI_RS09510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09510
old locus tag: SCITRI_001980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSRISPGAMNELRAQAHDTLMDIREDIRNNRHWMVFPFNVYSSYIPDTETGWKPNNAKPSDYGSYTRIFDNMESTIAQWQGSLKIVQKYKGEEINILTIDDFKNQPINSTIWANNETPFAIKLKDENENNYWKLIDGENIYDINKMLEYLKQYKLSYFINNDNKADNFYTKEVKVGKYWDAYMIDDRSSIQFGEAKFEQVFTQQSTERQYTLLILDEDAERHRVIEVQQINSERSWFFIEKKHYFILRSLVTKYGKDIVINTVNKIVINNVKENE
SIO_010081: SCITRI_RS09510
subclass of: SO_0000673
so part of: SCITRI_RS09510
location: complement(3511..4338)
location: region:3511-4338:-1
so has part: feature:3511-4338:-1:exon

WP_071937333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3511-4338:-1:exon

SCITRI_RS09515
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09515
old locus tag: SCITRI_001981
so part of: sequence
location: complement(4342..5736)
location: region:4342-5736:-1
so has part: feature:4342-5736:-1:exon
subclass of: SO_0000010

54239774
type: Gene
SIO_000068: ncbigene

position:4342:-1
position: 4342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5736:-1
position: 5736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4342-5736:-1:exon

SCITRI_RS09515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09515
old locus tag: SCITRI_001981
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNNNTYPTLPNLNDINSVLKYYNYDWTINLANIIARHQMRLVNGKNILFNSHREDILNKLNWWYETYKIKEKLDKNELTASLMGKTIFGLLETSDGNIDLWINPFNFTSRVSKINEIEQGADIWLNYHQSDSGFILNLICTKDKIVIKGWPKNNEVVVGQSKTQIKDDVKPVLVQEFKNKLGIVPFWEMINEPNPLFLSTSTTLNPWPTMANCYKLQFDLEDSFNIKSKERWANRTHWYGILDDDLMTAYNKGNKKVLQDAFDDIFIQSGQSAVDGQLSQSLQVVQGTPILETYTQDQKSIIEQVYVACHFSSPFGDKSDSEQNKTQSLLTKTKDLEKQAYLQSYRMQYYTKMFDTVLKYYGLWDGSGERPYSFKFISASLVDQMRQNELITARLENKTMEPERAITEYDDVDGLEAAKYFEKVEAWQDKMQSKEIEHNNKLMEYDETGNNQNAIQGRTEIKED
SIO_010081: SCITRI_RS09515
subclass of: SO_0000673
so part of: SCITRI_RS09515
location: complement(4342..5736)
location: region:4342-5736:-1
so has part: feature:4342-5736:-1:exon

WP_071937334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4342-5736:-1:exon

SCITRI_RS09520
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09520
old locus tag: SCITRI_001982
so part of: sequence
location: complement(5729..5947)
location: region:5729-5947:-1
so has part: feature:5729-5947:-1:exon
subclass of: SO_0000010

54239775
type: Gene
SIO_000068: ncbigene

position:5729:-1
position: 5729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5947:-1
position: 5947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5729-5947:-1:exon

SCITRI_RS09520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09520
old locus tag: SCITRI_001982
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAVCGQVKKRLCKELKKDNIAICKLSLYNEYIKKYQKVKVCVKVLSNEPSLLTVNIINYALILKLKEQNNNE
SIO_010081: SCITRI_RS09520
subclass of: SO_0000673
so part of: SCITRI_RS09520
location: complement(5729..5947)
location: region:5729-5947:-1
so has part: feature:5729-5947:-1:exon

WP_071937335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5729-5947:-1:exon

SCITRI_RS09525
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09525
old locus tag: SCITRI_001983
so part of: sequence
location: complement(5925..6428)
location: region:5925-6428:-1
so has part: feature:5925-6428:-1:exon
subclass of: SO_0000010

54239776
type: Gene
SIO_000068: ncbigene

position:5925:-1
position: 5925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6428:-1
position: 6428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5925-6428:-1:exon

SCITRI_RS09525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09525
old locus tag: SCITRI_001983
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLKLIRLLTAALQDTKIGELLKDGLKKYGIIKKETSQFKKLYNWTDPRNILQYLKKATKQEINSLLDKIEKRSLEQGKNLFNEQYQDSKEWVNIQSSWIKYGKFEMTNKIINTGNATFLFQPKVIVQQIINYDNKGSEWLNEKRCLCNTWWACNKCKKTLYGSLWAS
SIO_010081: SCITRI_RS09525
subclass of: SO_0000673
so part of: SCITRI_RS09525
location: complement(5925..6428)
location: region:5925-6428:-1
so has part: feature:5925-6428:-1:exon

WP_071937336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5925-6428:-1:exon

SCITRI_RS09530
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09530
old locus tag: SCITRI_001984
so part of: sequence
location: complement(6460..7443)
location: region:6460-7443:-1
so has part: feature:6460-7443:-1:exon
subclass of: SO_0000010

54239777
type: Gene
SIO_000068: ncbigene

position:6460:-1
position: 6460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7443:-1
position: 7443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6460-7443:-1:exon

SCITRI_RS09530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09530
old locus tag: SCITRI_001984
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028247.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS30 family transposase
translation: MKDYTHLKYDERNLFKDLFLSDSCKKKNGTLNLSEIARQTNRSVNTVKREIKRFKNIEDYTAIEAQKDYYKKRKKCIKKLPTFTKEQLNFIHLRFNVYHDSPAEIIQRFLIKFGIKFPACVKTFYKWIFLGLLGLLKKNLLNGGRKNRTKKRPDNRGKLDERFKSIWDIENKESNVGWLEADTVIGKDHKSAVLVLVEQSSKKYFAMKLENHTANEVLEKLEELVRINGLVGKIKGIITDRGKEFSKFEEMEKITGSNVYYCDPGSPKQKPLIERINREFRKRFPKDTDFNNVNQKRIDWVVNVINDKLRPCLNWISAKEMFLQNIK
SIO_010081: SCITRI_RS09530
subclass of: SO_0000673
so part of: SCITRI_RS09530
location: complement(6460..7443)
location: region:6460-7443:-1
so has part: feature:6460-7443:-1:exon

WP_071937337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6460-7443:-1:exon

SCITRI_RS09535
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09535
old locus tag: SCITRI_001985
so part of: sequence
location: 7747..8154
location: region:7747-8154:1
so has part: feature:7747-8154:1:exon
subclass of: SO_0000010

54239778
type: Gene
SIO_000068: ncbigene

position:7747:1
position: 7747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8154:1
position: 8154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7747-8154:1:exon

SCITRI_RS09535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09535
old locus tag: SCITRI_001985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKEFNPKTASLRTFYRKIDEFWQNKSPHKPYTLNDLTNEFNLSRKWRYDTYASEKIVPLLEKQVDRIESEIINFMMKSPDGAKLYWQRAFNYKYSLQEKELEKELNLNNQQPMIVNLQTDIRDIKNDNNKDDKNA
SIO_010081: SCITRI_RS09535
subclass of: SO_0000673
so part of: SCITRI_RS09535
location: 7747..8154
location: region:7747-8154:1
so has part: feature:7747-8154:1:exon

WP_071937338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7747-8154:1:exon

SCITRI_RS09540
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09540
old locus tag: SCITRI_001986
so part of: sequence
location: 8147..9625
location: region:8147-9625:1
so has part: feature:8147-9625:1:exon
subclass of: SO_0000010

54239779
type: Gene
SIO_000068: ncbigene

position:8147:1
position: 8147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9625:1
position: 9625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8147-9625:1:exon

SCITRI_RS09540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09540
old locus tag: SCITRI_001986
inference: COORDINATES: protein motif:HMM:TIGR01547.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: PBSX family phage terminase large subunit
translation: MLNHFTYLLEIPYWLLQNSNVGNKYPFAKKFELVNEINQIGSRHSGKTLSNLEMFAELIKISMLIKEPIFIFASMKMNKDIRDSIFQNIWNTLEKHNIPFSVNLSTHSFTIPNGTKIVCRGLHSATKREKLKAFADLNKYKLVIDWREECDQYNQNDINEIDFALRGSQNKITINTCNPESLKRYIVGYCNQLLPFNEEIMRSKWEQTAYIEKWDMKIIIHYTNWRLNSFLPKEEENKILRLEQLDPERARVWSWGLPGNTSGSIFARYLDIMQATDIIQPTKLLGGVDLANSTSPKGHTTAASFWLYNSFDKKAYKVAEYTHSNATQQFKGPLEQVKDILEFYNNQLNQYFNLIQQGISINVDDSAYATLESLNREKYNYTFGQYMHFKPAQKQKFKIKHRIEAFTMLINTNQLKWLWEKCPVSKNQYELIQWEDKPEAREDKVLDLYDDTFDSDFYALHFELIPMVKHNSIWTLYLSFNAGWCLISNKKC
SIO_010081: SCITRI_RS09540
subclass of: SO_0000673
so part of: SCITRI_RS09540
location: 8147..9625
location: region:8147-9625:1
so has part: feature:8147-9625:1:exon

WP_071937339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8147-9625:1:exon

SCITRI_RS11980
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS11980
old locus tag: SCITRI_001987
so part of: sequence
location: 9641..9931
location: region:9641-9931:1
so has part: feature:9641-9931:1:exon
subclass of: SO_0000010

79946552
type: Gene
SIO_000068: ncbigene

position:9641:1
position: 9641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9931:1
position: 9931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9641-9931:1:exon

SCITRI_RS11980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS11980
old locus tag: SCITRI_001987
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKNLIKSMLPSMIRKYVEEGLKNKGIYYDKILKNFINAKDINDLRKYIRRLEQGFYRNIGRDKRRTVNQIGTYKWKQNQAQQFRKKEENIYHNFLK
SIO_010081: SCITRI_RS11980
subclass of: SO_0000673
so part of: SCITRI_RS11980
location: 9641..9931
location: region:9641-9931:1
so has part: feature:9641-9931:1:exon

WP_204305194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9641-9931:1:exon

SCITRI_RS09545
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09545
old locus tag: SCITRI_001988
so part of: sequence
location: 10031..10876
location: region:10031-10876:1
so has part: feature:10031-10876:1:exon
subclass of: SO_0000010

54239780
type: Gene
SIO_000068: ncbigene

position:10031:1
position: 10031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10876:1
position: 10876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10031-10876:1:exon

SCITRI_RS09545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09545
old locus tag: SCITRI_001988
inference: COORDINATES: protein motif:HMM:NF012870.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DDE-type integrase/transposase/recombinase
translation: MLKDLIKKYFKNKFSTFYYYWANKILIAFCDLYFEYCNKHAGGFLSLFYNLKKGIHGEKLKNKAPKNLKTFFRWLKKDERWLKIKNKIKEIKKQHPRYEVKEIGLLQMDAKYFVPSKFPVDKKYYVYDFIDEKTRLALGYVYDKLNIDNAIAAVKKAISDFKNIFGVKITRIRTDNGSEFINNYRNNQKNTVKETNFTQFLTDKNIFHQTKPVRSPQSNGKIERFHQNYTKLFVFEEKILNAVSLQNKLNDYYYFYNFERVHKSLNFQTPFNFLNSLSLIK
SIO_010081: SCITRI_RS09545
subclass of: SO_0000673
so part of: SCITRI_RS09545
location: 10031..10876
location: region:10031-10876:1
so has part: feature:10031-10876:1:exon

WP_237238125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10031-10876:1:exon

SCITRI_RS09550
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS09550
old locus tag: SCITRI_001989
so part of: sequence
location: complement(11123..12340)
location: region:11123-12340:-1
so has part: feature:11123-12340:-1:exon
subclass of: SO_0000010

54239781
type: Gene
SIO_000068: ncbigene

position:11123:-1
position: 11123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12340:-1
position: 12340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11123-12340:-1:exon

SCITRI_RS09550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS09550
old locus tag: SCITRI_001989
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004028274.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTNKLRNWKVIMIIQGILMGALFSFIPFAIFVKFGLTKIWFFLLIPIAMFFFTPLWVKVKKKKSNTFILQINSFFLFIFLSLLMTVNFFDNNLIIYFYPLLLFCTGMFVAGMVPFSMEIIRSYAREHQLKTNPSIYFIVGSVVTIIIPFLLQYFLTELTTKISLQGYFSLLALINFSLIFFNHDIQTEEITFKINPSSWKILQKNKQFWSYLYSSSFLYSINEVFGYILPILIFTNTAIMIIVISSLYVIRKISYLFGYLLKINSNNIKHQIIWNTIITIIAIGLLLGLTIVFFPFQTQLSHILYLTIGLGGSQILIGCFLGHLSRIQKNNIISLVGTDHLTLGLMIEHVFGHAIFSLLLSVIIIPIIINFYTNILTYIIIYSIIIGMLLLSFSFIKLPVKKIKT
SIO_010081: SCITRI_RS09550
subclass of: SO_0000673
so part of: SCITRI_RS09550
location: complement(11123..12340)
location: region:11123-12340:-1
so has part: feature:11123-12340:-1:exon

WP_071937340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11123-12340:-1:exon

SCITRI_RS11985
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS11985
old locus tag: SCITRI_001990
so part of: sequence
location: 12692..13576
location: region:12692-13576:1
so has part: feature:12692-13576:1:exon
subclass of: SO_0000010

79946553
type: Gene
SIO_000068: ncbigene

position:12692:1
position: 12692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13576:1
position: 13576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12692-13576:1:exon

SCITRI_RS11985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS11985
old locus tag: SCITRI_001990
inference: COORDINATES: protein motif:HMM:NF012670.2
GO function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: thiamine pyrophosphate-dependent enzyme
translation: MLGIEAINKANSGHPGIVLGAAPMAYTLFTRHLVVNPQVDKWINRDRFVLAAGHGSALLYSLLHLSGFDLNIDDLRNFRQVDSITPGHPESHLTPGVDVATGPLGQGLAAAVGLALAETHLAARYNTKKYPLYDHYTYVLCGDGDLQEGVTQEAISLAGHWKLNKLIVLFDSNDVQLDNMVNVAQSENIADRFKAANWNYLFVKDGNDIEAIDQAIIKAKKSNKPTLIEVKTIIGDGTTKQGTPAVHGAPLGSDIETVRKMLEWNYKPFEVPSEVYKDLKSMLNNGELKNINNG
SIO_010081: SCITRI_RS11985
subclass of: SO_0000673
so part of: SCITRI_RS11985
location: 12692..13576
location: region:12692-13576:1
so has part: feature:12692-13576:1:exon

WP_237238268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12692-13576:1:exon

SCITRI_RS11990
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS11990
old locus tag: SCITRI_001991
so part of: sequence
location: 13579..14514
location: region:13579-14514:1
so has part: feature:13579-14514:1:exon
subclass of: SO_0000010

79946554
type: Gene
SIO_000068: ncbigene

position:13579:1
position: 13579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14514:1
position: 14514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13579-14514:1:exon

SCITRI_RS11990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS11990
old locus tag: SCITRI_001991
inference: COORDINATES: protein motif:HMM:NF014798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: transketolase C-terminal domain-containing protein
translation: MYQGLCKENPALAKELDDAVYGNFNFNPQDFRDLKPIKPQATRISSGAILDRLSNIIPGLIGGSADLSGSTKAKGADGVYSAENRLGRNLAYGVREFAMAAINNGICLHRGLIPFASGFFVFADYMKPAIRLSSLMEIPAIYILSHDSIAVGEDGPTHQPIEQLAMLRSQPNLNVFRPADFNETLGAYHMALQSKHTPSVILITRQDLPKLEHSNVELVKKGAYQVYGQEDNNHVCLLATGSEVSMAIAVAKKLEHDKKIKVKVVSMPCWELFEQQDAKYKQRLLEPLALIASIELGTTFGWERYILQIVG
SIO_010081: SCITRI_RS11990
subclass of: SO_0000673
so part of: SCITRI_RS11990
location: 13579..14514
location: region:13579-14514:1
so has part: feature:13579-14514:1:exon

WP_237238269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13579-14514:1:exon

SCITRI_RS12255
type: Gene
subclass of: SO_0000704
RO_0002162: 2133
locus tag: SCITRI_RS12255
old locus tag: SCITRI_001992
so part of: sequence
location: 14747..14869
location: region:14747-14869:1
so has part: feature:14747-14869:1:exon
subclass of: SO_0000010

79946607
type: Gene
SIO_000068: ncbigene

position:14747:1
position: 14747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14869:1
position: 14869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14747-14869:1:exon

SCITRI_RS12255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2133
locus tag: SCITRI_RS12255
old locus tag: SCITRI_001992
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIFYWKETLFILRSLVTKYGKDIVINTVNKIVINNVKENE
SIO_010081: SCITRI_RS12255
subclass of: SO_0000673
so part of: SCITRI_RS12255
location: 14747..14869
location: region:14747-14869:1
so has part: feature:14747-14869:1:exon

WP_257785706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14747-14869:1:exon