Clostridium tetani E88 plasmid pE88, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
The genome sequence of Clostridium tetani, the causative agent of tetanus disease
Submitted (11-JUL-2002) Goettingen Genomics Laboratory, Institute for Microbiology and Genetics, Grisebachstrasse 8, Goettingen 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nAF528097.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:01:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,862\nCDSs (total) :: 2,786\nGenes (coding) :: 2,748\nCDSs (with protein) :: 2,748\nGenes (RNA) :: 76\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 14 of 38\nPseudo Genes (incomplete) :: 24 of 38\nPseudo Genes (internal stop) :: 7 of 38\nPseudo Genes (multiple problems) :: 5 of 38\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
TdeIII family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_003378571.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012158037.1
COORDINATES: protein motif:HMM:NF016432.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF028534.2
COORDINATES: similar to AA sequence:RefSeq:WP_012704800.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278365.1
COORDINATES: similar to AA sequence:RefSeq:WP_019278366.1
COORDINATES: similar to AA sequence:RefSeq:WP_003382546.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017753349.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_003292404.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011100796.1
IS200/IS605-like element ISClte2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013726799.1
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: similar to AA sequence:RefSeq:WP_012064643.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_010296604.1
COORDINATES: similar to AA sequence:RefSeq:WP_010296605.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913697.1
COORDINATES: similar to AA sequence:RefSeq:WP_002592690.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013290239.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988294.1
COORDINATES: protein motif:HMM:NF024080.2
COORDINATES: similar to AA sequence:RefSeq:WP_011100838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016291930.1
COORDINATES: similar to AA sequence:RefSeq:WP_003465437.1
COORDINATES: similar to AA sequence:RefSeq:WP_010900901.1
COORDINATES: similar to AA sequence:RefSeq:WP_015394148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988288.1
COORDINATES: similar to AA sequence:RefSeq:WP_003492452.1
COORDINATES: similar to AA sequence:RefSeq:WP_003367730.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018590274.1
COORDINATES: similar to AA sequence:RefSeq:WP_013720987.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003374869.1
COORDINATES: similar to AA sequence:RefSeq:WP_003374834.1
COORDINATES: similar to AA sequence:RefSeq:WP_003374914.1
COORDINATES: similar to AA sequence:RefSeq:WP_003446914.1
COORDINATES: similar to AA sequence:RefSeq:WP_010297332.1
COORDINATES: protein motif:HMM:NF022597.2
COORDINATES: protein motif:HMM:NF019487.2
COORDINATES: similar to AA sequence:RefSeq:WP_011986174.1
COORDINATES: similar to AA sequence:RefSeq:WP_010296827.1
COORDINATES: similar to AA sequence:RefSeq:WP_011100836.1
COORDINATES: similar to AA sequence:RefSeq:WP_014520037.1
botulinum neurotoxin transcription-activating sigma factor BotR