Vibrio tasmaniensis strain LMG 20012 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
DOI:10.1007/s00284-021-02725-0 Publication Status: Online-Only
Submitted (05-JAN-2022) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025513.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 125x\nSequencing Technology :: Illumina MiSeq; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/29/2022 11:09:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,445\nCDSs (total) :: 4,262\nGenes (coding) :: 4,193\nCDSs (with protein) :: 4,193\nGenes (RNA) :: 183\nrRNAs :: 16, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 15, 15 (5S, 16S, 23S)\ntRNAs :: 133\nncRNAs :: 4\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 20 of 69\nPseudo Genes (incomplete) :: 49 of 69\nPseudo Genes (internal stop) :: 13 of 69\nPseudo Genes (multiple problems) :: 12 of 69\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016800090.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_017817632.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_017191276.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_016790705.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790704.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799706.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012548923.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011395932.1
COORDINATES: similar to AA sequence:RefSeq:WP_011395933.1
COORDINATES: protein motif:HMM:TIGR01733.1
amino acid adenylation domain-containing protein
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF015549.2
COORDINATES: protein motif:HMM:NF017273.2
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_020977920.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612263.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098667.1
COORDINATES: similar to AA sequence:RefSeq:WP_004937714.1
COORDINATES: similar to AA sequence:RefSeq:WP_010799689.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612096.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019824695.1
COORDINATES: protein motif:HMM:NF027074.2
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016786731.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786729.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786728.1
COORDINATES: similar to AA sequence:RefSeq:WP_010320052.1
COORDINATES: similar to AA sequence:RefSeq:WP_010320053.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020628679.1
COORDINATES: similar to AA sequence:RefSeq:WP_005595204.1
COORDINATES: similar to AA sequence:RefSeq:WP_005595205.1
COORDINATES: similar to AA sequence:RefSeq:WP_017097000.1
COORDINATES: similar to AA sequence:RefSeq:WP_017108531.1
COORDINATES: similar to AA sequence:RefSeq:WP_017108529.1
COORDINATES: similar to AA sequence:RefSeq:WP_017449218.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006073977.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: protein motif:HMM:NF025189.2
COORDINATES: protein motif:HMM:NF026766.2
immunity 26/phosphotriesterase HocA family protein
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017818801.1
transposase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016800101.1
COORDINATES: similar to AA sequence:RefSeq:WP_017791685.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_017818843.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_017818168.1
COORDINATES: similar to AA sequence:RefSeq:WP_017818841.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_017818839.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_017103572.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_017191269.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800095.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_016800094.1
COORDINATES: similar to AA sequence:RefSeq:WP_017096872.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800093.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_017191043.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017096434.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_016800088.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799707.1
COORDINATES: similar to AA sequence:RefSeq:WP_017188064.1
COORDINATES: similar to AA sequence:RefSeq:WP_017817459.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191241.1
COORDINATES: similar to AA sequence:RefSeq:WP_005592694.1
COORDINATES: similar to AA sequence:RefSeq:WP_006712894.1
COORDINATES: similar to AA sequence:RefSeq:WP_020477222.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085272.1
COORDINATES: similar to AA sequence:RefSeq:WP_017106702.1
COORDINATES: protein motif:HMM:NF027059.2
GO:0017148 - negative regulation of translation [Evidence IEA]; GO:0009372 - quorum sensing [Evidence IEA]; GO:0044010 - single-species biofilm formation [Evidence IEA]
type II toxin-antitoxin system MqsR family toxin
COORDINATES: protein motif:HMM:NF027067.2
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_001000833.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191080.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800122.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098486.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085514.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800121.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017085512.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085511.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_017191095.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191380.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008219463.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_017817613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008219452.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800102.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_008219446.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800099.1
COORDINATES: similar to AA sequence:RefSeq:WP_017818842.1
COORDINATES: similar to AA sequence:RefSeq:WP_017191037.1
COORDINATES: similar to AA sequence:RefSeq:WP_017103571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017188057.1
COORDINATES: similar to AA sequence:RefSeq:WP_017818175.1