Metamycoplasma orale strain NCTC10112 plasmid 5.
type: Entry
definition: Metamycoplasma orale strain NCTC10112 plasmid 5.
sequence version: NZ_LR214944.1
sequence date: 2023-05-01
sequence: sequence
division: CON
label: NZ_LR214944.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4384073
keyword: RefSeq
source: Metamycoplasma orale (Mycoplasma orale)
organism: Metamycoplasma orale
taxonomy: Bacteria; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Metamycoplasma.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR214944.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/01/2023 02:13:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 733\nCDSs (total) :: 692\nGenes (coding) :: 672\nCDSs (with protein) :: 672\nGenes (RNA) :: 41\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 11 of 20\nPseudo Genes (incomplete) :: 11 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 2 of 20\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 7368
topology: linear
so has quality: SO_0000987
location: 1..7368
location: region:1-7368:1
RO_0002162: 2121

NZ_LR214944
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4384073
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7368:1
position: 7368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7368:1:source
so part of: sequence
organism: Metamycoplasma orale
mol type: genomic DNA
strain: NCTC10112
serovar: not available: to be reported later
isolation source: Oropharynx
host: Homo sapiens
culture collection: NCTC:10112
type material: type strain of Mycoplasma orale
plasmid: 5
country: USA: Washington DC
collection date: 1900/1967

2121
type: Taxonomy
SIO_000068: taxonomy

EXC29_RS03570
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03570
so part of: sequence
location: 279..434
location: region:279-434:1
so has part: feature:279-434:1:exon
subclass of: SO_0000010

position:279:1
position: 279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:434:1
position: 434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279-434:1:exon

EXC29_RS03570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MATQHRISIVNNHTLSTISRKLKIIDNIRTGNKAFINGQNEKVDSDFLKLL
SIO_010081: EXC29_RS03570
subclass of: SO_0000673
so part of: EXC29_RS03570
location: 279..434
location: region:279-434:1
so has part: feature:279-434:1:exon

WP_165000500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:279-434:1:exon

EXC29_RS03725
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03725
old locus tag: NCTC10112_00722
so part of: sequence
location: 982..1974
location: region:982-1974:1
so has part: feature:982-1974:1:exon
subclass of: SO_0000010

position:982:1
position: 982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1974:1
position: 1974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:982-1974:1:exon

EXC29_RS03725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03725
old locus tag: NCTC10112_00722
inference: COORDINATES: protein motif:HMM:NF024867.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MKLIQVEAHGFKSFADKVTLKFDGGVVAIIGPNGSGKSNINDAIRWVLGESSYKALRGDNMEDVIFAGSKTEKEMNRAEVTLTFDNKDRAIKIPYDVFTISRVLNRGKGENKYYINGEPAKLKEVKEIAMESGISKSSLAIIGQGTISDIAEATPERRREIFEEASGTSMYRYRKVDAQKKLERTEEALAQISVLVQELEKQVKPLQRQAEKAKIYMEKSDQLKEVEVALLVHDFIFFSERLKELTQQAKEFMLVKEDLEVRLESYNTSLGEKKELLDNLKKSTEEISKELAEINEVIQEMEIRKVKEEKERDLIWVVKKMLIQVKRKKL
SIO_010081: EXC29_RS03725
subclass of: SO_0000673
so part of: EXC29_RS03725
location: 982..1974
location: region:982-1974:1
so has part: feature:982-1974:1:exon

WP_232017815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:982-1974:1:exon

EXC29_RS03730
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03730
old locus tag: NCTC10112_00723
so part of: sequence
location: 1926..3245
location: region:1926-3245:1
so has part: feature:1926-3245:1:exon
subclass of: SO_0000010

position:1926:1
position: 1926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3245:1
position: 3245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1926-3245:1:exon

EXC29_RS03730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03730
old locus tag: NCTC10112_00723
inference: COORDINATES: protein motif:HMM:NF018208.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSGQKNVDPGQKKETLKHSLSVLNQNIISYKEFIKEKNEQLNELEIKSVKYNSDISEFSRLYNIENDKLNKVKNKIEVIQDQMTNKSSLAKGTKIIVENQHLFKGYEGLVSELIQIDKDYIRAIEVVLSSAAQHIVVDEPETATAAINFLKANNGGKATFIPLSSISPRFVAEQHIVVAQTQEGFLGVASELVTTKKRYEVLKRFLLGNVLVCDTIESAVRLHSLLEKKYTVVTLDGDIIRIGGVMTGGQASQTVSAFSLEDQIKELESFIQPLEKNISTLKEQISKLEFEKQTALSLISNYMAEKNSYEVKLAEDTEEFDKLSLLYSQISNEKITFESNVDFTKMINENLARKSDLSVQLRTQKEILRTTEEQYYQTIVKKNELDEELKQLLDENGKKIGDKARAETIIDSAKKDYLNNMDFYSKLLNNITNLTLILM
SIO_010081: EXC29_RS03730
subclass of: SO_0000673
so part of: EXC29_RS03730
location: 1926..3245
location: region:1926-3245:1
so has part: feature:1926-3245:1:exon

WP_232017817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1926-3245:1:exon

EXC29_RS07265
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07265
so part of: sequence
location: 3505..3705
location: region:3505-3705:1
so has part: feature:3505-3705:1:exon
subclass of: SO_0000010

position:3505:1
position: 3505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3705:1
position: 3705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3505-3705:1:exon

EXC29_RS07265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAEIRYTDPDNILESGIDVIAQLLEKQLKILNYFQVEKKHLLLFHYYFHCLKRNLFHYILMEEVSL
SIO_010081: EXC29_RS07265
subclass of: SO_0000673
so part of: EXC29_RS07265
location: 3505..3705
location: region:3505-3705:1
so has part: feature:3505-3705:1:exon

WP_232017818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3505-3705:1:exon

EXC29_RS07270
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07270
so part of: sequence
location: complement(3702..3854)
location: region:3702-3854:-1
so has part: feature:3702-3854:-1:exon
subclass of: SO_0000010

position:3702:-1
position: 3702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3854:-1
position: 3854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3702-3854:-1:exon

EXC29_RS07270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MAEIRYTDPDNILESGIDVIAQPPGKAIKILNYFQVEKKHLCYFIIIFIA
SIO_010081: EXC29_RS07270
subclass of: SO_0000673
so part of: EXC29_RS07270
location: complement(3702..3854)
location: region:3702-3854:-1
so has part: feature:3702-3854:-1:exon

WP_165000501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3702-3854:-1:exon

EXC29_RS03515
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03515
old locus tag: NCTC10112_00724
so part of: sequence
location: complement(3842..6379)
location: region:3842-6379:-1
so has part: feature:3842-6379:-1:exon
subclass of: SO_0000010

position:3842:-1
position: 3842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6379:-1
position: 6379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3842-6379:-1:exon

EXC29_RS03515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03515
old locus tag: NCTC10112_00724
inference: COORDINATES: protein motif:HMM:NF024573.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: AAA family ATPase
translation: MKLIQVEAHGFKSFADKVTLKFDGGVVAIIGPNGSGKSNINDAIRWVLGESSYKALRGDNMEDVIFAGSKTEKEMNRAEVTLTFDNKDRAIKIPYDVFTISRVLNRGKGENKYYINGEPAKLKEVKEIAMESGISKSSLAIIGQGTISDIAEATPERRREIFEEASGTSMYRYRKVDAQKKLERTEEALAQISVLVQELEKQVKPLQRQAEKAKIYMEKSDQLKEVEVALLVHDFIFFSERLKELTQQAKEFMLVKEDLEVRLESYNTSLGEKKELLDNLKKSTEEISKELAEINEVIQEMEIRKVKEEKERDLILSGQKNVDPGQKKETLKHSLSVLNQNIISYKEFIKEKNEQLNELEIKSVKYNSDISEFSRLYNIENDKLNKVKNKIEVIQDQMTNKSSLAKGTKIIVENQHLFKGYEGLVSELIQIDKDYIRAIEVVLSSAAQHIVVDEPETATAAINFLKANNGGKATFIPLSSISPRFVAEQHIVVAQTQEGFLGVASELVTTKKRYEVLKRFLLGNVLVCDTIESAVRLHSLLEKKYTVVTLDGDIIRIGGVMTGGQASQTVSAFSLEDQIKELESFIQPLEKNISTLKEQISKLEFEKQTALSLISNYMAEKNSYEVKLAEDTEEFDKLSLLYSQISNEKITFESNVDFTKMINENLARKSDLSVQLRTQKEILRTTEEQYYQTIVKKNELDEELKQLLDENGKKIGDKARAETIIDSAKKRLSEQYGLLFETAQQYYKPDIDFDVARKLVENLKQDIRELGHINLEAIQQLEEVQTRYDEVKTQEDQIIVAKKTIEEAINEMDKMIVERITETVNLVNGEFKFVFGKMFGGGWLK
SIO_010081: EXC29_RS03515
subclass of: SO_0000673
so part of: EXC29_RS03515
location: complement(3842..6379)
location: region:3842-6379:-1
so has part: feature:3842-6379:-1:exon

WP_129619180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3842-6379:-1:exon

EXC29_RS03525
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03525
old locus tag: NCTC10112_00725
so part of: sequence
location: complement(6779..7270)
location: region:6779-7270:-1
so has part: feature:6779-7270:-1:exon
subclass of: SO_0000010

position:6779:-1
position: 6779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7270:-1
position: 7270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6779-7270:-1:exon

EXC29_RS03525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03525
old locus tag: NCTC10112_00725
inference: COORDINATES: protein motif:HMM:NF025973.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: ribonuclease III family protein
translation: MGIDLKGININTFCEALTHTTFSNEHKNVQNFEYLEFLGDAIIEFVVTAEIYKRFPNYNEGMATQHRISIVNNHTLSTISRKLKIIDNIRTGNKAFINGQNEKVDSDFFEAFIAALYVEKGLDFATKFLLKTLKNIFIKSTLKRLQILKPQYRNCFNQPALLI
SIO_010081: EXC29_RS03525
subclass of: SO_0000673
so part of: EXC29_RS03525
location: complement(6779..7270)
location: region:6779-7270:-1
so has part: feature:6779-7270:-1:exon

WP_165000502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6779-7270:-1:exon