Metamycoplasma orale strain NCTC10112 plasmid 3.
type: Entry
definition: Metamycoplasma orale strain NCTC10112 plasmid 3.
sequence version: NZ_LR214942.1
sequence date: 2023-05-01
sequence: sequence
division: CON
label: NZ_LR214942.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4384073
keyword: RefSeq
source: Metamycoplasma orale (Mycoplasma orale)
organism: Metamycoplasma orale
taxonomy: Bacteria; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Metamycoplasma.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR214942.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/01/2023 02:13:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 733\nCDSs (total) :: 692\nGenes (coding) :: 672\nCDSs (with protein) :: 672\nGenes (RNA) :: 41\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 11 of 20\nPseudo Genes (incomplete) :: 11 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 2 of 20\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 28293
topology: linear
so has quality: SO_0000987
location: 1..28293
location: region:1-28293:1
RO_0002162: 2121

NZ_LR214942
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4384073
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28293:1
position: 28293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28293:1:source
so part of: sequence
organism: Metamycoplasma orale
mol type: genomic DNA
strain: NCTC10112
serovar: not available: to be reported later
isolation source: Oropharynx
host: Homo sapiens
culture collection: NCTC:10112
type material: type strain of Mycoplasma orale
plasmid: 3
country: USA: Washington DC
collection date: 1900/1967

2121
type: Taxonomy
SIO_000068: taxonomy

EXC29_RS07195
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07195
so part of: sequence
location: complement(<1..461)
location: region:1-461:-1
so has part: feature:1-461:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:461:-1
position: 461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-461:-1:exon

EXC29_RS07195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: DDE-type integrase/transposase/recombinase
translation: MNKLGLFCEVRQRKRKRENKNLNVKFKNLVKRDYDGIYNDVYATDVTYIPSPKDVYENHVYLSVIIQHRTKKVISWNLSKVNDNNLVLDHFKHTIFPTTEKFIIHSDHGIQYSSQEFVSFINSINGVISMSRIGNSLDNREIEYFFSILKTEI
SIO_010081: EXC29_RS07195
subclass of: SO_0000673
so part of: EXC29_RS07195
location: complement(<1..461)
location: region:1-461:-1
so has part: feature:1-461:-1:exon

WP_165000496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-461:-1:exon

EXC29_RS07200
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07200
old locus tag: NCTC10112_00674
so part of: sequence
location: complement(650..1108)
location: region:650-1108:-1
so has part: feature:650-1108:-1:exon
subclass of: SO_0000010

position:650:-1
position: 650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1108:-1
position: 1108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650-1108:-1:exon

EXC29_RS07200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07200
old locus tag: NCTC10112_00674
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MGRQLKINEWLQVFDLYENYKNNKISKRAFEYEYLKICGSNKIFNRYVIRWIKIKIKKYNLGMNIESKTGKSPKKGKGSGRPRKKFPLQEIENRKRALKEISKEDLEWIVDEFYYDEILKKYNTDSIEEVIKKIKNKKNLSTTKKYHWHFRH
SIO_010081: EXC29_RS07200
subclass of: SO_0000673
so part of: EXC29_RS07200
location: complement(650..1108)
location: region:650-1108:-1
so has part: feature:650-1108:-1:exon

WP_129619172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:650-1108:-1:exon

EXC29_RS03335
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03335
old locus tag: NCTC10112_00675
so part of: sequence
location: 1323..1871
location: region:1323-1871:1
so has part: feature:1323-1871:1:exon
subclass of: SO_0000010

position:1323:1
position: 1323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1871:1
position: 1871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1323-1871:1:exon

EXC29_RS03335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03335
old locus tag: NCTC10112_00675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020002646.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: inorganic diphosphatase
translation: MKEIEVNIEISKNSNIKYEYDRKTGKIKVDRILRGDFKYPANYGFIKEALDWDGDELDALVYSSEEFLPGTALNGRVIGAMKMIDDGETDTKLIVVHADDYRLDHIKTLNDVDPMWLQSVQNFFSTYKNFKRKDITKVSGFENIDWAEKEYNECCELMKKYGKLDKKEFIAKMKKEHPEKYC
SIO_010081: EXC29_RS03335
subclass of: SO_0000673
so part of: EXC29_RS03335
location: 1323..1871
location: region:1323-1871:1
so has part: feature:1323-1871:1:exon

WP_022936247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1323-1871:1:exon

EXC29_RS03340
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: rlmB
locus tag: EXC29_RS03340
old locus tag: NCTC10112_00676
so part of: sequence
location: complement(1924..2622)
location: region:1924-2622:-1
so has part: feature:1924-2622:-1:exon
subclass of: SO_0000010

position:1924:-1
position: 1924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2622:-1
position: 2622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1924-2622:-1:exon

EXC29_RS03340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: rlmB
locus tag: EXC29_RS03340
old locus tag: NCTC10112_00676
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002881370.1
GO function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO process: GO:0009451 - RNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
translation: MSKYIYGKNSVMDALNNHFPIKKLFIQNNLSFKQKLNFKNISYITLQEMNKLVKGNHQGFIAEIEEYKYFDIGTIIKDKASQVLVLDHIQDPQNFGAILRSANAFNFNYIIPKDRACDVTPTVLKTSSGGFNGLKIIKVSSLLEAINFLKENGFWVYSSALNNNAKKLDDLNNFALPICLIVGNEEKGISSTLLKNSDEVIYIEQFGTVQSLNVSVASAILMHKIKTTINKK
SIO_010081: EXC29_RS03340
subclass of: SO_0000673
so part of: EXC29_RS03340
location: complement(1924..2622)
location: region:1924-2622:-1
so has part: feature:1924-2622:-1:exon

WP_129619173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1924-2622:-1:exon

EXC29_RS03675
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03675
old locus tag: NCTC10112_00677
so part of: sequence
location: complement(2708..3433)
location: region:2708-3433:-1
so has part: feature:2708-3433:-1:exon
subclass of: SO_0000010

position:2708:-1
position: 2708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3433:-1
position: 3433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2708-3433:-1:exon

EXC29_RS03675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03675
old locus tag: NCTC10112_00677
inference: COORDINATES: protein motif:HMM:NF013565.2
GO function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I tRNA ligase family protein
translation: MLANLVKDSEDSKNKKYFADFALWKDTEVGVKYDSPFGKGRPGWHTECSCFINKYFKGETLDVHGGGIDLIFPHHENENIQHFAINKKPIANTWLHFGTINYNNEKMSKSLGNIINFDTYLEKYLPDSYRLLMLTVSYSKPISVTDTLLESINSQLKKFISLYNKVQLENIKQEIDLNIINEILNNVSNLDFAIAYKKILNLFKDKNKSSTFFKLLEILGFVFINNKISQEDKTLYLNWKN
SIO_010081: EXC29_RS03675
subclass of: SO_0000673
so part of: EXC29_RS03675
location: complement(2708..3433)
location: region:2708-3433:-1
so has part: feature:2708-3433:-1:exon

WP_232017793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2708-3433:-1:exon

EXC29_RS03680
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03680
old locus tag: NCTC10112_00678
so part of: sequence
location: complement(3442..3843)
location: region:3442-3843:-1
so has part: feature:3442-3843:-1:exon
subclass of: SO_0000010

position:3442:-1
position: 3442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3843:-1
position: 3843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3442-3843:-1:exon

EXC29_RS03680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03680
old locus tag: NCTC10112_00678
inference: COORDINATES: protein motif:HMM:NF013565.2
GO function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I tRNA ligase family protein
translation: MKRYYLCGPTVYNKPHIGNYRPIMTFDILIRAKRFLGEEIYFLHNITDIDDKIINKALEENKTEKEIAKYYEEYYLSLFKVLNIAMPTKLVRVTEHLNDMYEYIQKMLDNGSAYKIGTNVYLMLKNMKMNMEK
SIO_010081: EXC29_RS03680
subclass of: SO_0000673
so part of: EXC29_RS03680
location: complement(3442..3843)
location: region:3442-3843:-1
so has part: feature:3442-3843:-1:exon

WP_232017796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3442-3843:-1:exon

EXC29_RS07205
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: argS
locus tag: EXC29_RS07205
old locus tag: NCTC10112_00679
so part of: sequence
location: 3895..4425
location: region:3895-4425:1
so has part: feature:3895-4425:1:exon
subclass of: SO_0000010

position:3895:1
position: 3895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4425:1
position: 4425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3895-4425:1:exon

EXC29_RS07205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: argS
locus tag: EXC29_RS07205
old locus tag: NCTC10112_00679
EC number: 6.1.1.19
inference: COORDINATES: protein motif:HMM:NF015450.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: arginine--tRNA ligase
translation: MNTIKDKIIASLNEALKKIKLTKNVVLTEAKDHGDYATNIALTLQKEAGKPAMEIAELIVKNIDLKKNNFINKIDIVKPGFINFWVTNNVFAEVVNNINTLKENYGSGKKNSLGAINVEFVSANPTGYLHIGHARNAAIGATLCNVLEKAGHKVIREYLVNDYGHQMDNLGCINFC
SIO_010081: EXC29_RS07205
subclass of: SO_0000673
so part of: EXC29_RS07205
location: 3895..4425
location: region:3895-4425:1
so has part: feature:3895-4425:1:exon

WP_232017797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3895-4425:1:exon

EXC29_RS03690
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03690
old locus tag: NCTC10112_00680
so part of: sequence
location: 4457..4621
location: region:4457-4621:1
so has part: feature:4457-4621:1:exon
subclass of: SO_0000010

position:4457:1
position: 4457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4621:1
position: 4621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4457-4621:1:exon

EXC29_RS03690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03690
old locus tag: NCTC10112_00680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPEESYRGGDIIEFADEFYKQYKDKYKNVEYTDEIKKFFRKFGREIALKILKKI
SIO_010081: EXC29_RS03690
subclass of: SO_0000673
so part of: EXC29_RS03690
location: 4457..4621
location: region:4457-4621:1
so has part: feature:4457-4621:1:exon

WP_232017800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4457-4621:1:exon

EXC29_RS07210
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07210
old locus tag: NCTC10112_00681
so part of: sequence
location: 4681..4944
location: region:4681-4944:1
so has part: feature:4681-4944:1:exon
subclass of: SO_0000010

position:4681:1
position: 4681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4944:1
position: 4944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4681-4944:1:exon

EXC29_RS07210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07210
old locus tag: NCTC10112_00681
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVWPTIKKLKTTYVKDGATWLASTKGGKDDKDRVIIKSNGDSTYLCADIAYHAQKFEQLNDQNMKIIDVWGADISDMLNVLNFHLKI
SIO_010081: EXC29_RS07210
subclass of: SO_0000673
so part of: EXC29_RS07210
location: 4681..4944
location: region:4681-4944:1
so has part: feature:4681-4944:1:exon

WP_232017802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4681-4944:1:exon

EXC29_RS03700
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03700
old locus tag: NCTC10112_00682
so part of: sequence
location: 5144..5500
location: region:5144-5500:1
so has part: feature:5144-5500:1:exon
subclass of: SO_0000010

position:5144:1
position: 5144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5144-5500:1:exon

EXC29_RS03700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03700
old locus tag: NCTC10112_00682
inference: COORDINATES: protein motif:HMM:NF017555.2
GO function: GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DALR anticodon-binding domain-containing protein
translation: MKTSLFIIKYAYARCYQLLEKANVKKFEATNLDNEYAQKLVNELIEYPELIQTITKNYKVNLLPPYLLKLANTFNSFYSNVKVLGDKNEQSYLALVNATKIVLENAMKLMDLDILTKM
SIO_010081: EXC29_RS03700
subclass of: SO_0000673
so part of: EXC29_RS03700
location: 5144..5500
location: region:5144-5500:1
so has part: feature:5144-5500:1:exon

WP_232017804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5144-5500:1:exon

EXC29_RS03355
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03355
old locus tag: NCTC10112_00683
so part of: sequence
location: complement(5869..6252)
location: region:5869-6252:-1
so has part: feature:5869-6252:-1:exon
subclass of: SO_0000010

position:5869:-1
position: 5869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6252:-1
position: 6252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5869-6252:-1:exon

EXC29_RS03355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03355
old locus tag: NCTC10112_00683
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIAYIIENYQDTYNIYYKGHPGHNDNNSFIESVINQGEEIGYKDLLTNELKKTKIKKGNEIVVLESQISSEELTTYHALETNGLHFDKFASSGFFSNALLGIENGYNTLDDLIFITKIRLLRKKLFM
SIO_010081: EXC29_RS03355
subclass of: SO_0000673
so part of: EXC29_RS03355
location: complement(5869..6252)
location: region:5869-6252:-1
so has part: feature:5869-6252:-1:exon

WP_129619174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5869-6252:-1:exon

EXC29_RS03360
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03360
old locus tag: NCTC10112_00684
so part of: sequence
location: complement(6713..7375)
location: region:6713-7375:-1
so has part: feature:6713-7375:-1:exon
subclass of: SO_0000010

position:6713:-1
position: 6713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7375:-1
position: 7375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6713-7375:-1:exon

EXC29_RS03360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03360
old locus tag: NCTC10112_00684
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKKLNQAFILMPLFGSILSMSSILVSCKYSLGYSENQIKKNEQLNATEAISEENISNANNIVDVANLAEINLFYSTYGVQTYNNMVRLAMLANSEVHFIKNTFVPFQNKLDTTYFINFLRNDKKVDEDKNNKLIERLNKELDKLKTNNVDKNQIAKLEKEIKELKEAPYKNSSVIEIGSFSNIVKAYNAFEYIIKNNLNKKLIFELIQTIFVIILNFSIF
SIO_010081: EXC29_RS03360
subclass of: SO_0000673
so part of: EXC29_RS03360
location: complement(6713..7375)
location: region:6713-7375:-1
so has part: feature:6713-7375:-1:exon

WP_129619175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6713-7375:-1:exon

EXC29_RS03365
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03365
pseudo: true
so part of: sequence
location: complement(7479..7984)
location: region:7479-7984:-1
so has part: feature:7479-7984:-1:exon
subclass of: SO_0000010

position:7479:-1
position: 7479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7984:-1
position: 7984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7479-7984:-1:exon

EXC29_RS03365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012498354.1
GO function: GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: adenine phosphoribosyltransferase
SIO_010081: EXC29_RS03365
subclass of: SO_0000673
so part of: EXC29_RS03365
location: complement(7479..7984)
location: region:7479-7984:-1
so has part: feature:7479-7984:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7479-7984:-1:exon

EXC29_RS03370
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03370
pseudo: true
so part of: sequence
location: complement(8041..8264)
location: region:8041-8264:-1
so has part: feature:8041-8264:-1:exon
subclass of: SO_0000010

position:8041:-1
position: 8041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8264:-1
position: 8264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8041-8264:-1:exon

EXC29_RS03370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002881271.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: YneF family protein
SIO_010081: EXC29_RS03370
subclass of: SO_0000673
so part of: EXC29_RS03370
location: complement(8041..8264)
location: region:8041-8264:-1
so has part: feature:8041-8264:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8041-8264:-1:exon

EXC29_RS07215
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07215
so part of: sequence
location: complement(8334..8747)
location: region:8334-8747:-1
so has part: feature:8334-8747:-1:exon
subclass of: SO_0000010

position:8334:-1
position: 8334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8747:-1
position: 8747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8334-8747:-1:exon

EXC29_RS07215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVVYRDSIKMGAISTPPFITLLYRKLILKQVRRTWLVIAILFYVGLFTLTFWALKDVKWRQLDFKTWIHSSFPNPNLVVYILCGLMSVVLISYIAFTIFRKKEQLIFNHFLVQKLWIIMNFKKRNLKLIDFMQKYFS
SIO_010081: EXC29_RS07215
subclass of: SO_0000673
so part of: EXC29_RS07215
location: complement(8334..8747)
location: region:8334-8747:-1
so has part: feature:8334-8747:-1:exon

WP_232017806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8334-8747:-1:exon

EXC29_RS03595
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03595
old locus tag: NCTC10112_00686
so part of: sequence
location: complement(8842..9159)
location: region:8842-9159:-1
so has part: feature:8842-9159:-1:exon
subclass of: SO_0000010

position:8842:-1
position: 8842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9159:-1
position: 9159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8842-9159:-1:exon

EXC29_RS03595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03595
old locus tag: NCTC10112_00686
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSLKPIINSGQNDGNNTQSFTTESIANRMLYDTLQTRALVNKGKKVIKDPYGIIPNGIYKVFKLEKNVKLASIVTCLVFFFLSLIATILFATTPQLFLSNTSGQK
SIO_010081: EXC29_RS03595
subclass of: SO_0000673
so part of: EXC29_RS03595
location: complement(8842..9159)
location: region:8842-9159:-1
so has part: feature:8842-9159:-1:exon

WP_197724028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8842-9159:-1:exon

EXC29_RS03380
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: lepA
locus tag: EXC29_RS03380
pseudo: true
so part of: sequence
location: complement(9163..10960)
location: region:9163-10960:-1
so has part: feature:9163-10960:-1:exon
subclass of: SO_0000010

position:9163:-1
position: 9163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10960:-1
position: 10960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9163-10960:-1:exon

EXC29_RS03380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: lepA
locus tag: EXC29_RS03380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015083999.1
GO function: GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: translation elongation factor 4
SIO_010081: EXC29_RS03380
subclass of: SO_0000673
so part of: EXC29_RS03380
location: complement(9163..10960)
location: region:9163-10960:-1
so has part: feature:9163-10960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9163-10960:-1:exon

EXC29_RS03385
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03385
old locus tag: NCTC10112_00689
so part of: sequence
location: 11045..11920
location: region:11045-11920:1
so has part: feature:11045-11920:1:exon
subclass of: SO_0000010

position:11045:1
position: 11045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11920:1
position: 11920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11045-11920:1:exon

EXC29_RS03385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03385
old locus tag: NCTC10112_00689
inference: COORDINATES: protein motif:HMM:NF012816.2
GO function: GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: diacylglycerol kinase family protein
translation: MLFLLYNSNSKIGKNKEKIFKVLASAIKTFKDGDIRVKDITKLDSIEERLAKINKEKDKILIVGGDGTLTSLINKYKKYLDKLPKIYAVKAGTGNDFLRNIIHSGYPVENINNKYFLINPFLKNLPICKVNNNEKTFLNGIGIGLDGYICKNVEEQRNKNNKQSFFKITLKSFMEFKPLEKLTIEVDGKKHELKKCWFASIMNGKYYGGGMKIAPKADFKGEKLQAIIINDINKFKLFMLFPLIYTGNHSKVKAVHFFEGKHIKITSDEKTYVQIDGEPQKDINEIEVIKE
SIO_010081: EXC29_RS03385
subclass of: SO_0000673
so part of: EXC29_RS03385
location: 11045..11920
location: region:11045-11920:1
so has part: feature:11045-11920:1:exon

WP_022936256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11045-11920:1:exon

EXC29_RS07220
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07220
old locus tag: NCTC10112_00690
so part of: sequence
location: 12052..13905
location: region:12052-13905:1
so has part: feature:12052-13905:1:exon
subclass of: SO_0000010

position:12052:1
position: 12052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13905:1
position: 13905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12052-13905:1:exon

EXC29_RS07220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07220
old locus tag: NCTC10112_00690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHWLYLKRSAWHYVLIACTILITGILGFLFGYDQINYRFAYNFFLYSLFTILGLMIPIFTVIMTSKVFHFAKTNNIDYVLYSKPISRKRMYYTNLLISMVFSLIYTFFAYIGIFCVSVGIVAQIKTTNYQKFLIILKNLGAYILYSLLFVLLFSSITAACSAKLGPKSTSGLILGSFIGVGVVFNIVNQVVVQRQISGYDFASKKINDDIVESNSNQENRVKNLIFINKNDVNSNLDNLKLSIGTISSIFDIKQLNNNLFNKLIGLGKDDFESERFSQGSTLYYPRKLNDKKIREHLLKNFLSVYSFSYDPNNIPKMSLNNLLDIKYFYWNEAYVVASQLFKNISFDLDESAAIENALRTHEPFFFESFTNKKQYIENLEIFNFTNNELTKIKNLSTKLEEHIKNNPNNDPYPIFGDEISSFIKDYIDRVTTAVVNKLFPLIKFDLDENSDKYKNFIAQLKKKYAPAYWDRINDWDEQFKVVSEKFREKKPIEFFQEVSKLTNSDTFKRNLDRISVIAMANLIKNILSSKDKEISKNLLGILYYLDSKVVLNSKVNQVVMEFYNLIDIDNKDTLSEIKEYISVNYYPWYITVIIFIGFALMSIFVGKKLFDKQSFNA
SIO_010081: EXC29_RS07220
subclass of: SO_0000673
so part of: EXC29_RS07220
location: 12052..13905
location: region:12052-13905:1
so has part: feature:12052-13905:1:exon

WP_165000497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12052-13905:1:exon

EXC29_RS07225
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07225
old locus tag: NCTC10112_00691
so part of: sequence
location: 13914..14858
location: region:13914-14858:1
so has part: feature:13914-14858:1:exon
subclass of: SO_0000010

position:13914:1
position: 13914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14858:1
position: 14858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13914-14858:1:exon

EXC29_RS07225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07225
old locus tag: NCTC10112_00691
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012498365.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: ABC transporter ATP-binding protein
translation: MENQNNNFEKTNIALKFEKLSKNFNNNKILKNLNFEVKKGEFHGFIGSNGAGKTTTFRCLLGFYPDFTGNILINGISNRDVKQSRKFIGYIPEIATFPKKINVIEYLELMARFSNIPEKNAKEIVQKWLDYFEISDELRTKNGNNLSSGQKKKILLIQALISEPEILILDEPAANLDPIARKNLFDTLKKLNNEGKTIFISSHILAELEQYVDSITIIEKGTIITSDALSKLKEKQDFNYLLTTNNNSEALKILKENFKTTNFKEQNNILYINCEANEWNQILNLIIKNNLEIIKAEQFKQKLDDIYFKNISNN
SIO_010081: EXC29_RS07225
subclass of: SO_0000673
so part of: EXC29_RS07225
location: 13914..14858
location: region:13914-14858:1
so has part: feature:13914-14858:1:exon

WP_022936258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13914-14858:1:exon

EXC29_RS03400
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03400
old locus tag: NCTC10112_00693
so part of: sequence
location: 15186..15467
location: region:15186-15467:1
so has part: feature:15186-15467:1:exon
subclass of: SO_0000010

position:15186:1
position: 15186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15467:1
position: 15467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15186-15467:1:exon

EXC29_RS03400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03400
old locus tag: NCTC10112_00693
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MCALCNERNFKEDMSTKKPFDEEKFTIKILSSFKYIMENDILPAFADKFGKKLKEEIMNEINPRLDKIEADIAMLKSFHIKDIEEYNKNMTKN
SIO_010081: EXC29_RS03400
subclass of: SO_0000673
so part of: EXC29_RS03400
location: 15186..15467
location: region:15186-15467:1
so has part: feature:15186-15467:1:exon

WP_027120311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15186-15467:1:exon

EXC29_RS07230
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07230
old locus tag: NCTC10112_00694
so part of: sequence
location: 15518..15949
location: region:15518-15949:1
so has part: feature:15518-15949:1:exon
subclass of: SO_0000010

position:15518:1
position: 15518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15949:1
position: 15949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15518-15949:1:exon

EXC29_RS07230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07230
old locus tag: NCTC10112_00694
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: helix-turn-helix domain-containing protein
translation: MQFKFKKEKRSKWNRDIKGYLKLKLDQKIKIVELYLQDFSILEISKIMKNSYSACYSVIEKYKKFGYNSFAMEKKKGRKSKINLDAQKAANFKINIENKIEDKDLLIKQLKEENKILKLENAIAKKVSALVQLKDSLTKKNSK
SIO_010081: EXC29_RS07230
subclass of: SO_0000673
so part of: EXC29_RS07230
location: 15518..15949
location: region:15518-15949:1
so has part: feature:15518-15949:1:exon

WP_129619123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15518-15949:1:exon

EXC29_RS03410
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03410
old locus tag: NCTC10112_00695
so part of: sequence
location: 15946..16851
location: region:15946-16851:1
so has part: feature:15946-16851:1:exon
subclass of: SO_0000010

position:15946:1
position: 15946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16851:1
position: 16851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15946-16851:1:exon

EXC29_RS03410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03410
old locus tag: NCTC10112_00695
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS3 family transposase
translation: MTIELRQEFKKLFSIKLILEKIKLKKSTFYEILKSQNKPDKDENLKKLIFDLFNYNKGLYGYRRITFALRNKGTMINHKKVQKLMKSLNLFGKTLRRKNKYSSFKGDAHKNIPNLLLDKENITEDFFRYKRIFSSDKYLKILGTDVTEFKLKNEEKAYFSPVVDFENREILGYSISKSPNLRMIGKMLENVEENGHSLNNVLLHSDQGWQYTHEEYINYLKEKQTIQSMSRKGNCLDNSPTECLFSVIKREFWFEEENRFKSFKEFKTALEKYISYYNNDRIVNKLKGLSPVQYRNKSKHN
SIO_010081: EXC29_RS03410
subclass of: SO_0000673
so part of: EXC29_RS03410
location: 15946..16851
location: region:15946-16851:1
so has part: feature:15946-16851:1:exon

WP_232017770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15946-16851:1:exon

EXC29_RS03415
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: rplK
locus tag: EXC29_RS03415
old locus tag: NCTC10112_00696
pseudo: true
so part of: sequence
location: 17061..>17480
location: region:17061-17480:1
so has part: feature:17061-17480:1:exon
subclass of: SO_0000010

position:17061:1
position: 17061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17480:1
position: 17480
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17061-17480:1:exon

EXC29_RS03415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: rplK
locus tag: EXC29_RS03415
old locus tag: NCTC10112_00696
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011283760.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: 50S ribosomal protein L11
SIO_010081: EXC29_RS03415
subclass of: SO_0000673
so part of: EXC29_RS03415
location: 17061..>17480
location: region:17061-17480:1
so has part: feature:17061-17480:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17061-17480:1:exon

EXC29_RS03420
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: rplA
locus tag: EXC29_RS03420
pseudo: true
so part of: sequence
location: 17504..18197
location: region:17504-18197:1
so has part: feature:17504-18197:1:exon
subclass of: SO_0000010

position:17504:1
position: 17504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18197:1
position: 18197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17504-18197:1:exon

EXC29_RS03420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: rplA
locus tag: EXC29_RS03420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011283759.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: 50S ribosomal protein L1
SIO_010081: EXC29_RS03420
subclass of: SO_0000673
so part of: EXC29_RS03420
location: 17504..18197
location: region:17504-18197:1
so has part: feature:17504-18197:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17504-18197:1:exon

EXC29_RS03425
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03425
so part of: sequence
location: 18497..18730
location: region:18497-18730:1
so has part: feature:18497-18730:1:exon
subclass of: SO_0000010

position:18497:1
position: 18497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18730:1
position: 18730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18497-18730:1:exon

EXC29_RS03425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPKYETLQSDVTELKKLIEESKKVLSSKKSANELKVQFEKLVKMVGSVYNKKLQIDNRIQHLIILMHLIHYLLLVIN
SIO_010081: EXC29_RS03425
subclass of: SO_0000673
so part of: EXC29_RS03425
location: 18497..18730
location: region:18497-18730:1
so has part: feature:18497-18730:1:exon

WP_129619176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18497-18730:1:exon

EXC29_RS07235
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07235
old locus tag: NCTC10112_00699
so part of: sequence
location: 18793..19056
location: region:18793-19056:1
so has part: feature:18793-19056:1:exon
subclass of: SO_0000010

position:18793:1
position: 18793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19056:1
position: 19056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18793-19056:1:exon

EXC29_RS07235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07235
old locus tag: NCTC10112_00699
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIAVEAGKRPNWQETNEYLIDVKIKDLANDLQIANAKEPTYESHGKIQVSGKIDYEINANGEIIFSYKIGFYNRGNPKISETVLLLI
SIO_010081: EXC29_RS07235
subclass of: SO_0000673
so part of: EXC29_RS07235
location: 18793..19056
location: region:18793-19056:1
so has part: feature:18793-19056:1:exon

WP_129619177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18793-19056:1:exon

EXC29_RS03560
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03560
so part of: sequence
location: 19195..19332
location: region:19195-19332:1
so has part: feature:19195-19332:1:exon
subclass of: SO_0000010

position:19195:1
position: 19195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19332:1
position: 19332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19195-19332:1:exon

EXC29_RS03560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPEGFEIESKKMVPNDEAGFYELTILFKLKSKKVNVHLRKTKNSL
SIO_010081: EXC29_RS03560
subclass of: SO_0000673
so part of: EXC29_RS03560
location: 19195..19332
location: region:19195-19332:1
so has part: feature:19195-19332:1:exon

WP_165000498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19195-19332:1:exon

EXC29_RS03435
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03435
old locus tag: NCTC10112_00700
so part of: sequence
location: 20191..20751
location: region:20191-20751:1
so has part: feature:20191-20751:1:exon
subclass of: SO_0000010

position:20191:1
position: 20191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20751:1
position: 20751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20191-20751:1:exon

EXC29_RS03435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03435
old locus tag: NCTC10112_00700
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVSGNFGSKKLLQHLKYDSTTFEAKSNVYFLPHNTFLPKEMYSEYYAYVFSSPIYDQETKKLTIKISVVSTNDLNAGNTKDQVASKRVEVVANEFLQCNITKYLFTKSVFDLRLKGSTFDQSKPASEVTMEILKQKLEEHYVGYVIENVEVDHSKSSEGKLLYKFSAKKDSFESFVLSLTISKFKK
SIO_010081: EXC29_RS03435
subclass of: SO_0000673
so part of: EXC29_RS03435
location: 20191..20751
location: region:20191-20751:1
so has part: feature:20191-20751:1:exon

WP_129619178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20191-20751:1:exon

EXC29_RS03440
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: eno
locus tag: EXC29_RS03440
pseudo: true
so part of: sequence
location: complement(20810..22177)
location: region:20810-22177:-1
so has part: feature:20810-22177:-1:exon
subclass of: SO_0000010

position:20810:-1
position: 20810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22177:-1
position: 22177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20810-22177:-1:exon

EXC29_RS03440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: eno
locus tag: EXC29_RS03440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011949494.1
GO function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO process: GO:0006096 - glycolytic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: phosphopyruvate hydratase
SIO_010081: EXC29_RS03440
subclass of: SO_0000673
so part of: EXC29_RS03440
location: complement(20810..22177)
location: region:20810-22177:-1
so has part: feature:20810-22177:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20810-22177:-1:exon

EXC29_RS03445
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03445
old locus tag: NCTC10112_00704
so part of: sequence
location: 22304..23014
location: region:22304-23014:1
so has part: feature:22304-23014:1:exon
subclass of: SO_0000010

position:22304:1
position: 22304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23014:1
position: 23014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22304-23014:1:exon

EXC29_RS03445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03445
old locus tag: NCTC10112_00704
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012498534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSEKNHEFQKLIDLIEKEKEEDPIKASYLIDKSLKEYVLKEEQEVLNYLREKIIFDIKKNKLLVKTSLPTIDLINFLKSLKMDYLFMVCYNELKNRNDVKNLASEFQYFFNKDGFEYGSFQTLIYELMVEKEIDYEYIIKKEKINPKKFKSLLSNKDIDKIKNEVLTKYEKDIANYKIASQVFAGYLFLYWVDILKNKTKNDYETIVSVTEVLLGNKDKKDLKDKNELELYEIFSN
SIO_010081: EXC29_RS03445
subclass of: SO_0000673
so part of: EXC29_RS03445
location: 22304..23014
location: region:22304-23014:1
so has part: feature:22304-23014:1:exon

WP_022936241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22304-23014:1:exon

EXC29_RS07240
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: tig
locus tag: EXC29_RS07240
old locus tag: NCTC10112_00705
so part of: sequence
location: 23100..24578
location: region:23100-24578:1
so has part: feature:23100-24578:1:exon
subclass of: SO_0000010

position:23100:1
position: 23100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24578:1
position: 24578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23100-24578:1:exon

EXC29_RS07240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: tig
locus tag: EXC29_RS07240
old locus tag: NCTC10112_00705
EC number: 5.2.1.8
inference: COORDINATES: protein motif:HMM:TIGR00115.1
GO component: GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: trigger factor
translation: MAEIKSKDWVVKVETKLEGEQWETYLKKARNALRAEVVVPGFRKGKAPINKLDARISIDKVFEKAIKSSQNVAIEKLDQKAAEQNKNLFWEKSISLKLENINEKELAISGEYIVIPHITLGDYKSLKIKLENLNVPADLIEKIKKEKLDKYAVKLESEEPIKLGDEVNFDFTGFIDGKEFEGGKAEGFDLEIGSKRFIPGFEEKMIGLKKGEEKDLKLKFPTDYHVKHLAGKDVVFKVKINSIKTISLPEITDSFVAELNLSPLIKTKKDFEQYINTYALAEHLKDVESDYSAKLSDKVNSLAKFEIHEAIIENRKEQTYHAFLRKLEEQQITEDEFLESAGLTKEEYLKDNEEKIIKELKSSFIMGAMAEAEKINVTYKDYEKYIGDIAANWGLQNIDIIKQYIPFSTYQTNEMTKKLIEKMMNYTDPEAAAEYKKLDSKVKKYFETLDKAKFEKDKAEDKKEEAKETKSKEEKPKAESTKKTTTKKEETK
SIO_010081: EXC29_RS07240
subclass of: SO_0000673
so part of: EXC29_RS07240
location: 23100..24578
location: region:23100-24578:1
so has part: feature:23100-24578:1:exon

WP_022936240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23100-24578:1:exon

EXC29_RS07245
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07245
so part of: sequence
location: 24709..24846
location: region:24709-24846:1
so has part: feature:24709-24846:1:exon
subclass of: SO_0000010

position:24709:1
position: 24709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24846:1
position: 24846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24709-24846:1:exon

EXC29_RS07245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKTNNQTIKEQDIKETKNKEKPKKHAMKKCLFEKDFLILKLEKWK
SIO_010081: EXC29_RS07245
subclass of: SO_0000673
so part of: EXC29_RS07245
location: 24709..24846
location: region:24709-24846:1
so has part: feature:24709-24846:1:exon

WP_165000499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24709-24846:1:exon

EXC29_RS03455
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: secA
locus tag: EXC29_RS03455
pseudo: true
so part of: sequence
location: 24795..27388
location: region:24795-27388:1
so has part: feature:24795-27388:1:exon
subclass of: SO_0000010

position:24795:1
position: 24795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27388:1
position: 27388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24795-27388:1:exon

EXC29_RS03455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: secA
locus tag: EXC29_RS03455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002882026.1
GO component: GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO process: GO:0043952 - protein transport by the Sec complex [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: preprotein translocase subunit SecA
SIO_010081: EXC29_RS03455
subclass of: SO_0000673
so part of: EXC29_RS03455
location: 24795..27388
location: region:24795-27388:1
so has part: feature:24795-27388:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24795-27388:1:exon

EXC29_RS03710
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03710
old locus tag: NCTC10112_00709
so part of: sequence
location: 27396..27638
location: region:27396-27638:1
so has part: feature:27396-27638:1:exon
subclass of: SO_0000010

position:27396:1
position: 27396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27638:1
position: 27638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27396-27638:1:exon

EXC29_RS03710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03710
old locus tag: NCTC10112_00709
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNKNFALSSRPKTLDNFICTKAHKIIFSNIIESKDFSSFIFFGSPGTGKSTIAYILASSLTDKYSYFNAATDKKEDLVSK
SIO_010081: EXC29_RS03710
subclass of: SO_0000673
so part of: EXC29_RS03710
location: 27396..27638
location: region:27396-27638:1
so has part: feature:27396-27638:1:exon

WP_232017808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27396-27638:1:exon

EXC29_RS03715
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03715
old locus tag: NCTC10112_00710
so part of: sequence
location: 27668..28102
location: region:27668-28102:1
so has part: feature:27668-28102:1:exon
subclass of: SO_0000010

position:27668:1
position: 27668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28102:1
position: 28102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27668-28102:1:exon

EXC29_RS03715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03715
old locus tag: NCTC10112_00710
inference: COORDINATES: protein motif:HMM:NF019348.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHRLNKDKQDILLPYLENKEITVYATTTENPYFKINPALRSRMLIVELKKPSHDEILEALKNTLSSNAAELEKYITNDILEHIAMQSGLDYRCALNNLELVCTLFSRNKNLKLDDIKSFLPSIQFAANKNGEEHYNYLQHFTNH
SIO_010081: EXC29_RS03715
subclass of: SO_0000673
so part of: EXC29_RS03715
location: 27668..28102
location: region:27668-28102:1
so has part: feature:27668-28102:1:exon

WP_232017810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27668-28102:1:exon

EXC29_RS03720
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03720
so part of: sequence
location: 28144..28272
location: region:28144-28272:1
so has part: feature:28144-28272:1:exon
subclass of: SO_0000010

position:28144:1
position: 28144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28272:1
position: 28272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28144-28272:1:exon

EXC29_RS03720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03720
inference: COORDINATES: protein motif:HMM:NF023428.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MVKSGDFDGLFRRMLCATYEDVGLANVHLSAAINSAISAFEN
SIO_010081: EXC29_RS03720
subclass of: SO_0000673
so part of: EXC29_RS03720
location: 28144..28272
location: region:28144-28272:1
so has part: feature:28144-28272:1:exon

WP_232017813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28144-28272:1:exon