Metamycoplasma orale strain NCTC10112 plasmid 2.
type: Entry
definition: Metamycoplasma orale strain NCTC10112 plasmid 2.
sequence version: NZ_LR214941.1
sequence date: 2023-05-01
sequence: sequence
division: CON
label: NZ_LR214941.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4384073
keyword: RefSeq
source: Metamycoplasma orale (Mycoplasma orale)
organism: Metamycoplasma orale
taxonomy: Bacteria; Mycoplasmatota; Mycoplasmoidales; Metamycoplasmataceae; Metamycoplasma.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR214941.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/01/2023 02:13:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 733\nCDSs (total) :: 692\nGenes (coding) :: 672\nCDSs (with protein) :: 672\nGenes (RNA) :: 41\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 11 of 20\nPseudo Genes (incomplete) :: 11 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 2 of 20\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 23922
topology: linear
so has quality: SO_0000987
location: 1..23922
location: region:1-23922:1
RO_0002162: 2121

NZ_LR214941
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4384073
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:23922:1
position: 23922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23922:1:source
so part of: sequence
organism: Metamycoplasma orale
mol type: genomic DNA
strain: NCTC10112
serovar: not available: to be reported later
isolation source: Oropharynx
host: Homo sapiens
culture collection: NCTC:10112
type material: type strain of Mycoplasma orale
plasmid: 2
country: USA: Washington DC
collection date: 1900/1967

2121
type: Taxonomy
SIO_000068: taxonomy

EXC29_RS03555
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03555
old locus tag: NCTC10112_00651
so part of: sequence
location: <1..449
location: region:1-449:1
so has part: feature:1-449:1:exon
subclass of: SO_0000010

position:449:1
position: 449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-449:1:exon

EXC29_RS03555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03555
old locus tag: NCTC10112_00651
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 3
transl table: 4
product: hypothetical protein
translation: PEHMFNKYRVINIKINDTIKGFSTNAFANQNINIVSDSINSKTIIGDNAFTRLGMINGKDTLITSEFKEMNIESFQKLLNSYSGKILFSNDFAFDSISTTALVANSVEFENGIETINNIKWAENFKFGLDDLYDSKPTVKKIIIPNSV
SIO_010081: EXC29_RS03555
subclass of: SO_0000673
so part of: EXC29_RS03555
location: <1..449
location: region:1-449:1
so has part: feature:1-449:1:exon

WP_165000495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-449:1:exon

EXC29_RS07315
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07315
so part of: sequence
location: 669..803
location: region:669-803:1
so has part: feature:669-803:1:exon
subclass of: SO_0000010

position:669:1
position: 669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:803:1
position: 803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:669-803:1:exon

EXC29_RS07315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPLNLLDSYDHTYFNSDTNESSEFTSLNNKDVLNLNELKNPGIN
SIO_010081: EXC29_RS07315
subclass of: SO_0000673
so part of: EXC29_RS07315
location: 669..803
location: region:669-803:1
so has part: feature:669-803:1:exon

WP_280951327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:669-803:1:exon

EXC29_RS07165
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07165
old locus tag: NCTC10112_00653
so part of: sequence
location: 1055..2941
location: region:1055-2941:1
so has part: feature:1055-2941:1:exon
subclass of: SO_0000010

position:1055:1
position: 1055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2941:1
position: 2941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055-2941:1:exon

EXC29_RS07165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07165
old locus tag: NCTC10112_00653
inference: COORDINATES: protein motif:HMM:NF024702.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: leucine-rich repeat domain-containing protein
translation: MQSIGENAFGFTKYNEGWQGKYGIDTINGKAELSLSEWNAITNKKFVFGLFLGKVTASASTFENNKIPTKYFFSNLFSELILESGIRELENKAVEYMANVRHITLPNTIINYGEDGENFSTYANKILTINGKNEINANNIPRELLRAFAGKIVFSNNPPENLMLNHVTSLVFEPGVTEIPKNFGPTSFNTNELSEVVFPNTLIKIGDNAFENSRIRNLVLPSSVKSIGYFAFGSSSLENGIETINGKTELNFDDWLKPDYDVKPSAFNGFGGKVIISENALSKIPNKSFYKFLFSEIEFQEGITEITKNIFNNIYPNTYFNPRLKNIILPTSLQKININLHFSPQDSFLGYFGNLKVFDTINGNSTLNYDDWFNKDVGIDTFSSFGKELVVSSALNNKFRKYDVKISFACETLRFSDDIEYISFRGKSERESAFPYLKELILPENIKQIRGNFSSKFLEKINGKTELDLDYWQTKGIINKPEEIFSVFSGFNNKVIISKNQAEALQNISDFAYFVNSKEIVFKEGIQYLPFLSISFGARREYQEQIIHIPSTLEFLEDNWLNYFYPANIFSKKFNGYDDERYTKFIIHAKDDETYNKKVDQIRKLFQICARDKSLSFLSFEHSTDLIK
SIO_010081: EXC29_RS07165
subclass of: SO_0000673
so part of: EXC29_RS07165
location: 1055..2941
location: region:1055-2941:1
so has part: feature:1055-2941:1:exon

WP_129619170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1055-2941:1:exon

EXC29_RS07170
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07170
old locus tag: NCTC10112_00654
so part of: sequence
location: 3012..7859
location: region:3012-7859:1
so has part: feature:3012-7859:1:exon
subclass of: SO_0000010

position:3012:1
position: 3012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7859:1
position: 7859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3012-7859:1:exon

EXC29_RS07170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07170
old locus tag: NCTC10112_00654
inference: COORDINATES: protein motif:HMM:NF024702.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: leucine-rich repeat protein
translation: MKASKEIKKDEIKSNSEDVSKDIANIDHTNNKKLKKNKSAILSDKDTSKLKLVKIMSIPLISIFSVQLVAGVVIEGMLKNVPKVNPQFENEEQIKFDAILQNADKVITSENVNEFKNKPKINKLRITGKIKEIGAGAFKDFKYIEEIIFEKDCVLNKIGYEAFSGMTSLKKITFENPDSISILSLDDFPKLASDNTAFQFGRKEDNNVVNASKAEYLAMFNKATLTKAELLRVSTISYNAFKNNSSVKTLDLSDTKISYIGKDALNNSKIENVLLSNQFENVEKGVFNDLTSLKSLKLGTKVLKIDDEAFQNSSISQIIFNDQLVEIGEKAFENSKLINVVTPNSLNKLGRNAFANITTLETFVLNNVQTIGANIIANSKALKKLDLSKAEKITSDSIKDIQVEEFIVNDLVNKLGKEVLATYNIKKLVLSNLKIVDRSLFENNTSLKELELREGLQEIKNSAFKNVKLEKLTLPKSLRKIDAKAFENCGLSKGIDFGTSKNLEIWDEAFANNDFTKLNISAVADIKNDNVFAGCANITNISMHEDTILPKFFYAKGLLASRFVLRNIFIPKSLYDYIGDVSWVNGMNYKIASLEEWYKFFCTNTHGDLVLPYRNLELVEYGKGIEYIKGITPEFMLDRNRPLNIKTHDEVQGFVYEAFNNQCINLISNSITPTTSIGKNAFTQLGMINGKNILTTNEWKTLSVNNLKTLISAFNNKIVFSNDFDYDILQQSSLVANSVEFEEGTQIIKNIGWKSFQKFGLTNLSLHQTSVKEIKFPTSVKKIINSFHNIHLYGNNTISFSNGSLLETIDNSFSSINNCASLDFSNTKLREILGENSINNIISDKNTGKLNLSLPLNLLDSCDLEYFNNRDTSSNFTSLNDKDNLSLNELKSPSLIKIFKKFNIKLNLTYLNPSFTLTNHMFENSSFSEIHFGEGYKIIPESFLKNSYLLTKVTLPSSLTHIGTMAFLNANLKELDFRHITNLQNIGIDAFGYTEEASNVKDLGINTINGKNELSLGDWNNITNKQFVFGLFKGKVIATTNTFNANKIPANYFNHKLFSTLVINSGITTLENDALNDCPNLEHITYPTTLTNHGINLSGSKNKILSINGKTTINASEVPGYLLQLFAGKIIFSNNPTTSTPRLKYVRSIKFENGVTQIPANFLDPSCDTLEELELPNTLTTIGEKAFFNSKIQNLVIPESVKNIGKKAFGSSSLIDGISTINGKTILNLDDWLKPGNDIHPSAFNGFGGKLFISNSALSQFRTNPGGADIKCFEDFYFSEIEFAEGITELTKDIIANKFSDGHIPRLRNIILPTSLTKITINLSFSNNDEKILYKLYDTVNGSSTLNNDEWIQKGANINTFASFGKELYITDSFARKINGLEKFWSACEKLVFANDVLLDADETVALGINSKPAGAFPFLKEVIIPDSIKKISINFASPFLETVNGKTELDLDEWYNRSISNNKLSLFSGFNGKVFISKLYNFELENNQEFTQFYNSKEIVFKEGIRYIPFLSISFAPRDEYKDQIIHIPSTFEGTFGHFEPDYHTTMPFSMMENFIKRINPKRKLERNTKFIIHAKDEETYNKKVKLIENIFRLCAQDKSLSFLSFEHSTDLIE
SIO_010081: EXC29_RS07170
subclass of: SO_0000673
so part of: EXC29_RS07170
location: 3012..7859
location: region:3012-7859:1
so has part: feature:3012-7859:1:exon

WP_022935968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3012-7859:1:exon

EXC29_RS07175
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07175
old locus tag: NCTC10112_00655
so part of: sequence
location: complement(7922..9196)
location: region:7922-9196:-1
so has part: feature:7922-9196:-1:exon
subclass of: SO_0000010

position:7922:-1
position: 7922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9196:-1
position: 9196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7922-9196:-1:exon

EXC29_RS07175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07175
old locus tag: NCTC10112_00655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013729261.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS3 family transposase
translation: MGRQLKINEWLQVFDLYENYKNNKISKRAFEYEYLKICGSNKIFNRYVIRWIKIKIKKYNLGMNIESKTGKSPKKGKGSGRPRKKFPLQEIENRKRALKEISKEDLEWIVDEFYYDEILKKYNTDSIEEVIKKIKNKKNLSTTIKNIIDILGIKKSTFYYKLKHLGQLKREKKVTYEEEIREAFKECKGRYGRERLSLLLKKKYKININPRTLGRNMNKLGLFCEVRQRKRKRENKNLNVKFKNLVKRDYDGIYNDVYATDVTYIPSPKDVYENHVYLSVIIQHRTKKVISWNLSKVNDNNLVLDHFKHTIFPTTEKFIIHSDHGIQYSSQEFVSFINSINGVISMSRIGNSLDNREIEYFFSILKTEIFPNFYQTVKTLTFIELKNKIKEFIDWYNNERFLKKFNLKTPQELWDVYNNKNFTI
SIO_010081: EXC29_RS07175
subclass of: SO_0000673
so part of: EXC29_RS07175
location: complement(7922..9196)
location: region:7922-9196:-1
so has part: feature:7922-9196:-1:exon

WP_232017758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7922-9196:-1:exon

EXC29_RS03235
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03235
old locus tag: NCTC10112_00656
so part of: sequence
location: complement(9275..10180)
location: region:9275-10180:-1
so has part: feature:9275-10180:-1:exon
subclass of: SO_0000010

position:9275:-1
position: 9275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10180:-1
position: 10180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9275-10180:-1:exon

EXC29_RS03235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03235
old locus tag: NCTC10112_00656
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS3 family transposase
translation: MTIELRQEFKKLFSIKLILEKIKLKKSTFYEILKSQNKPDKDENLKKLIFDLFNYNKGLYGYRRITFALRNKGTMINHKKVQKLMKSLNLFGKTLRRKNKYSSFKGDAHKNIPNLLLDKENITEDFFRYKRIFSSDKYLKILGTDVTEFKLKNEEKAYFSPVVDFENREILGYSISKSPNLRMIGKMLENVEENGHSLNNVLLHSDQGWQYTHEEYINYLKEKQTIQSMSRKGNCLDNSPTECLFSVIKREFWFEEENRFKSFKEFKTALEKYISYYNNDRIVNKLKGLSPVQYRNKSKHN
SIO_010081: EXC29_RS03235
subclass of: SO_0000673
so part of: EXC29_RS03235
location: complement(9275..10180)
location: region:9275-10180:-1
so has part: feature:9275-10180:-1:exon

WP_232017770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9275-10180:-1:exon

EXC29_RS07180
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07180
old locus tag: NCTC10112_00657
so part of: sequence
location: complement(10177..10608)
location: region:10177-10608:-1
so has part: feature:10177-10608:-1:exon
subclass of: SO_0000010

position:10177:-1
position: 10177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10608:-1
position: 10608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10177-10608:-1:exon

EXC29_RS07180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07180
old locus tag: NCTC10112_00657
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: helix-turn-helix domain-containing protein
translation: MQFKFKKEKRSKWNRDIKGYLKLKLDQKIKIVELYLQDFSILEISKIMKNSYSACYSVIEKYKKFGYNSFAMEKKKGRKSKINLDAQKAANFKINIENKIEDKDLLIKQLKEENKILKLENAIAKKVSALVQLKDSLTKKNSK
SIO_010081: EXC29_RS07180
subclass of: SO_0000673
so part of: EXC29_RS07180
location: complement(10177..10608)
location: region:10177-10608:-1
so has part: feature:10177-10608:-1:exon

WP_129619123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10177-10608:-1:exon

EXC29_RS03245
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03245
old locus tag: NCTC10112_00658
so part of: sequence
location: complement(10743..11237)
location: region:10743-11237:-1
so has part: feature:10743-11237:-1:exon
subclass of: SO_0000010

position:10743:-1
position: 10743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11237:-1
position: 11237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10743-11237:-1:exon

EXC29_RS03245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03245
old locus tag: NCTC10112_00658
EC number: 3.6.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020002358.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: dUTP diphosphatase
translation: MTVNFKDIFEAQKKLDEAFIKSIEDKEQFNDFELKKIIALLVELGEFANEVQEFKYWKKHKNINKVKVLEEYADGLHFLTSLAIKYNINSEINIDIKEKNFNKQLKDVYVAFSLLFKDINTKNVYNAYSLYLGLAFIIKLNEKEIKEWYFKKNEINYKRIANNY
SIO_010081: EXC29_RS03245
subclass of: SO_0000673
so part of: EXC29_RS03245
location: complement(10743..11237)
location: region:10743-11237:-1
so has part: feature:10743-11237:-1:exon

WP_129619165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10743-11237:-1:exon

EXC29_RS03250
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03250
old locus tag: NCTC10112_00659
so part of: sequence
location: 11302..11385
location: region:11302-11385:1
so has part: feature:11302-11385:1:exon
subclass of: SO_0000663

position:11302:1
position: 11302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11385:1
position: 11385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11302-11385:1:exon

EXC29_RS03250
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2121
locus tag: EXC29_RS03250
old locus tag: NCTC10112_00659
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:11335..11337,aa:Leu,seq:caa)
SIO_010081: EXC29_RS03250
subclass of: SO_0000673
so part of: EXC29_RS03250
location: 11302..11385
location: region:11302-11385:1
so has part: feature:11302-11385:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11302-11385:1:exon

EXC29_RS07185
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07185
old locus tag: NCTC10112_00660
so part of: sequence
location: 11558..12565
location: region:11558-12565:1
so has part: feature:11558-12565:1:exon
subclass of: SO_0000010

position:11558:1
position: 11558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12565:1
position: 12565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11558-12565:1:exon

EXC29_RS07185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07185
old locus tag: NCTC10112_00660
inference: COORDINATES: protein motif:HMM:NF033563.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS30 family transposase
translation: MNYTHINYEERVLIEHYFNLNYSINKIAKEINRSPSTISRELKRNFDSNIMNYNSNSASQLARKRRYHRFYFKFFSIREEYEAFNDIFTNVYNKTIWTVELLHFAAKYLFKFKCPSLRTTFNWIKSGNWVLVHKDLLRKSYVRGGKRKNTTVVDRLVQSEYVIPYWARPKEINNRSEFGHWEIDLICGKNARGHYHIITLVERQTRFAFTEKIKGKHPDNLNRILLKMIAKYNIPVFSITTDNGFEFRKLGLIGYKLGICIYQCDKYASWQKGSDENWNGLFRRFFPKGTDFNDISPEEIQRVTTLINKRLRKTLNYKSAEELYVDAYNKTIESL
SIO_010081: EXC29_RS07185
subclass of: SO_0000673
so part of: EXC29_RS07185
location: 11558..12565
location: region:11558-12565:1
so has part: feature:11558-12565:1:exon

WP_129619121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11558-12565:1:exon

EXC29_RS03260
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03260
old locus tag: NCTC10112_00661
so part of: sequence
location: 12748..13569
location: region:12748-13569:1
so has part: feature:12748-13569:1:exon
subclass of: SO_0000010

position:12748:1
position: 12748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13569:1
position: 13569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12748-13569:1:exon

EXC29_RS03260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03260
old locus tag: NCTC10112_00661
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNTKNRELKILKKTNAQSVWFWTLVLCMVIVVDAFFAYFGIVFKTKFDGYKVLGNDIALSIVCGFMVGLITLILAFVFLQIFKKAVIKDFFSYYCYINSLRNAHALLLIKDQRLLDIYKKNEAMTKKEYMELLAKMLNYSTSSIEYKNLVKNVDDDFRKHSYNEIEPKNIIRLGFLKTFVFNFLIPLIIILALIPFPILYQKDIVTKSSELPALSRLIIIVIMTIFVLNVSIFAYEIDATKKIWNNESFNNYFFFSFNTFSYKYLNSSFIRSE
SIO_010081: EXC29_RS03260
subclass of: SO_0000673
so part of: EXC29_RS03260
location: 12748..13569
location: region:12748-13569:1
so has part: feature:12748-13569:1:exon

WP_022935941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12748-13569:1:exon

EXC29_RS03265
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: metK
locus tag: EXC29_RS03265
old locus tag: NCTC10112_00662
so part of: sequence
location: complement(13591..14742)
location: region:13591-14742:-1
so has part: feature:13591-14742:-1:exon
subclass of: SO_0000010

position:13591:-1
position: 13591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14742:-1
position: 14742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13591-14742:-1:exon

EXC29_RS03265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: metK
locus tag: EXC29_RS03265
old locus tag: NCTC10112_00662
EC number: 2.5.1.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020002461.1
GO function: GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: methionine adenosyltransferase
translation: MKRLLTSESVGAGHPDKICDQISDAILDALLKQDPYSRVACDVIANNNVIYIGGQITTNGYVDVVKEAWKVLKPLGYTENDFNIMVGISEQSPDIAQGVKSNKNKELGAGDQGIIFGYATDENKYYMPWTITLAHELVKRAEKLRRQNKFPYAKADMKSQVTIEEDSDKNSIIVKKVLMSIQHDANYNYEEFRKFVKENIIDYVLKEHKLNLDYEMLLNPTGKFVIGGPVGDTGLTGRKIIVDTYGGFAHHGGGCQSGKDATKIDRSATYMARYIAKNIVAAKIAKKCEIQLSYAIGLPKPQSIYVETFNTSKYSETELIDMINKIFDLSVKGIIDTLDLLKPIYLPTATFGHFGRNDLDLPWERLNKVKEIQAYFEKKHSSK
SIO_010081: EXC29_RS03265
subclass of: SO_0000673
so part of: EXC29_RS03265
location: complement(13591..14742)
location: region:13591-14742:-1
so has part: feature:13591-14742:-1:exon

WP_022935940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13591-14742:-1:exon

EXC29_RS03270
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03270
old locus tag: NCTC10112_00663
so part of: sequence
location: complement(14925..15899)
location: region:14925-15899:-1
so has part: feature:14925-15899:-1:exon
subclass of: SO_0000010

position:14925:-1
position: 14925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15899:-1
position: 15899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14925-15899:-1:exon

EXC29_RS03270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03270
old locus tag: NCTC10112_00663
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008363077.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: amino acid--tRNA ligase-related protein
translation: MSKLNLKETQFAIDKLKTLFSSKLAKTLNLVRVSAPLFLLSSSHLNDPLNGEEPVKFKAKNIDEDLEIIHSLAKWKRYALSKYNFNINEGIYTDMNAIRREEEQDDLHSIYVDQWDWELIIKKEDRNLNFLQYIVKKIYQALYEVENEINLEYPQLSKKLTKDIYFISSQELLDKYPNLDVNQREYEISKKYGAVFIYKIGYNLTNNKPHSSRAKDYDDWNLNGDIIIYDKLHDRAIELSSMGIRVNRDSLIKQMDMSESKIKSLSDYHKQIIDETLPFTIGGGLGQSRIALFLLEKEHIGEVQVSVWDQKNVNKNKLKKLEIL
SIO_010081: EXC29_RS03270
subclass of: SO_0000673
so part of: EXC29_RS03270
location: complement(14925..15899)
location: region:14925-15899:-1
so has part: feature:14925-15899:-1:exon

WP_022935939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14925-15899:-1:exon

EXC29_RS03275
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: rplS
locus tag: EXC29_RS03275
old locus tag: NCTC10112_00664
pseudo: true
so part of: sequence
location: complement(<16117..16464)
location: region:16117-16464:-1
so has part: feature:16117-16464:-1:exon
subclass of: SO_0000010

position:16117:-1
position: 16117
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:16464:-1
position: 16464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16117-16464:-1:exon

EXC29_RS03275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: rplS
locus tag: EXC29_RS03275
old locus tag: NCTC10112_00664
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004024029.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: 50S ribosomal protein L19
SIO_010081: EXC29_RS03275
subclass of: SO_0000673
so part of: EXC29_RS03275
location: complement(<16117..16464)
location: region:16117-16464:-1
so has part: feature:16117-16464:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16117-16464:-1:exon

EXC29_RS03280
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: trmD
locus tag: EXC29_RS03280
old locus tag: NCTC10112_00665
so part of: sequence
location: complement(16457..17140)
location: region:16457-17140:-1
so has part: feature:16457-17140:-1:exon
subclass of: SO_0000010

position:16457:-1
position: 16457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17140:-1
position: 17140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16457-17140:-1:exon

EXC29_RS03280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: trmD
locus tag: EXC29_RS03280
old locus tag: NCTC10112_00665
EC number: 2.1.1.228
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004425067.1
GO function: GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO process: GO:0008033 - tRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: tRNA (guanosine(37)-N1)-methyltransferase TrmD
translation: MKINILTLFPEYFEQFKLQSIIAKAIKLGHLELNIIDFRKFSDDKHNKVDDTVYGGGSGMLLQVKPIHEALKTVPNSYKVLLSPQGKLFNQTEAHRLAKYDELTLICGHYEGFDERILNFVDEELSIGDYILTGGEIAAMVVAEATARLCPGVIKKESHENESFEGNGLLDYPQYTKPYDYLGYKVPDVLLSGNHKDIQKWREEQAYLKTKKNRKDIIKKLERKKDE
SIO_010081: EXC29_RS03280
subclass of: SO_0000673
so part of: EXC29_RS03280
location: complement(16457..17140)
location: region:16457-17140:-1
so has part: feature:16457-17140:-1:exon

WP_022935937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16457-17140:-1:exon

EXC29_RS03285
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: rpsP
locus tag: EXC29_RS03285
old locus tag: NCTC10112_00666
so part of: sequence
location: complement(17143..17409)
location: region:17143-17409:-1
so has part: feature:17143-17409:-1:exon
subclass of: SO_0000010

position:17143:-1
position: 17143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17409:-1
position: 17409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17143-17409:-1:exon

EXC29_RS03285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: rpsP
locus tag: EXC29_RS03285
old locus tag: NCTC10112_00666
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012855534.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: 30S ribosomal protein S16
translation: MVKLRLKRTGKKFYATYKIVASDERAPRDGKFIEELGNYDSHTKKLNINYELVTKYLDQGAKPSETVRNLLKVNDFYAKYKASKVSKK
SIO_010081: EXC29_RS03285
subclass of: SO_0000673
so part of: EXC29_RS03285
location: complement(17143..17409)
location: region:17143-17409:-1
so has part: feature:17143-17409:-1:exon

WP_022935936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17143-17409:-1:exon

EXC29_RS03290
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03290
old locus tag: NCTC10112_00667
so part of: sequence
location: 17668..18183
location: region:17668-18183:1
so has part: feature:17668-18183:1:exon
subclass of: SO_0000010

position:17668:1
position: 17668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18183:1
position: 18183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17668-18183:1:exon

EXC29_RS03290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03290
old locus tag: NCTC10112_00667
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MRKSVKRILISSSIFVISSIFLMSSLLITKKRYIANNKDNKNQQEEYITINISGAIFFPGEYTIIKNSLISDILKIAKPKSGANLKNIDLNNKIEKNNYKLYIPYKKDAKFFITEIKNATDLVNLGIRKNISIKIFNFIKQHKFKVTWEEVSKINGVGEKTLSILKQRLIL
SIO_010081: EXC29_RS03290
subclass of: SO_0000673
so part of: EXC29_RS03290
location: 17668..18183
location: region:17668-18183:1
so has part: feature:17668-18183:1:exon

WP_022935934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17668-18183:1:exon

EXC29_RS07320
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS07320
so part of: sequence
location: complement(18188..18322)
location: region:18188-18322:-1
so has part: feature:18188-18322:-1:exon
subclass of: SO_0000010

position:18188:-1
position: 18188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18322:-1
position: 18322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18188-18322:-1:exon

EXC29_RS07320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS07320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPTNNAFQLKILIAKNNTSVNQSKTLLTLKETRNIKSAIIKDLK
SIO_010081: EXC29_RS07320
subclass of: SO_0000673
so part of: EXC29_RS07320
location: complement(18188..18322)
location: region:18188-18322:-1
so has part: feature:18188-18322:-1:exon

WP_022935933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18188-18322:-1:exon

EXC29_RS03295
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03295
old locus tag: NCTC10112_00668
so part of: sequence
location: 18345..19496
location: region:18345-19496:1
so has part: feature:18345-19496:1:exon
subclass of: SO_0000010

position:18345:1
position: 18345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19496:1
position: 19496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18345-19496:1:exon

EXC29_RS03295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03295
old locus tag: NCTC10112_00668
inference: COORDINATES: protein motif:HMM:NF015714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: ComEC/Rec2 family competence protein
translation: MISKISLYITFKNVGKEIDDNFKIIKSFSNFFIVQNNSRTNILIYFKNNIFNIDDIVHVKGAVSEIKNVNSFHNSNNVYLQIYKASVYLYEKANINNFVNKDANTRMFLNLFIFSKQIDKNNEIIQMLKEMSIIHYFIISGFHFGIIYFIFKKIFEKIRLVKVSEYLSLLLLFIYLCMLKFPISAFRAFIFLLLRVINQKLFNKKFSNLTLLAFIATLFLIFDYSLIFNYSFIFSFVLTFVILLTNNIFRNTKKEYLKNIWISLFTYFSSLLISLTLVEKISIFSFIYQLFFGPIIFLSYTFSILFFWTKYLSMWYFNFLSVLIKLIYKTNIEINIGKKLIYLPFIIHALYILIYMLISLNRNYLMYKINSYFLAYQLNHFQR
SIO_010081: EXC29_RS03295
subclass of: SO_0000673
so part of: EXC29_RS03295
location: 18345..19496
location: region:18345-19496:1
so has part: feature:18345-19496:1:exon

WP_022935932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18345-19496:1:exon

EXC29_RS07190
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
gene: ligA
locus tag: EXC29_RS07190
old locus tag: NCTC10112_00669
so part of: sequence
location: complement(19450..21456)
location: region:19450-21456:-1
so has part: feature:19450-21456:-1:exon
subclass of: SO_0000010

position:19450:-1
position: 19450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21456:-1
position: 21456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19450-21456:-1:exon

EXC29_RS07190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
gene: ligA
locus tag: EXC29_RS07190
old locus tag: NCTC10112_00669
EC number: 6.5.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004424842.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: NAD-dependent DNA ligase LigA
translation: MNAKEKNIREEILNLQKKIAEWDNAYYNLDNPIVTDEIYDTEFIRLQKLEKQYSYLLTYEEVKNSPTQKIDAKSLSIFDKVIHKKPMLSLNKAYSIEEIKKFIKNIEKYTNDFSFLIEPKIDGLSISLTYENGKLIRGVTRGDGITGEDVTKNILQINDIPKEIEYKHKIELRGEIYLSISRFNELNEENLKNNLPPLANPRNAAAGTLRQLDSNIVSQRGLSSFIYFVVDAPSHNIFTMEDAFCFLKKNNFHVVKDYKLAKNINQIEEYINNFPELKKTFDFEADGVVIKLNEIKWWNKIGQTQKFPHYAIAFKFEPNIEITTIKKIFITIGRTGLVTYNGQVKTVEISGSKINFATLNNFNYIKELNLNVGDEVYIKKAGEIIPCIIGLVNPKGKPDYFKRIETCPYCNSKLIESETFLEEYCENYNCPEIIKKQLIHFSSKECMNFFSMGEKIVEKLYENKLILNPLDFYNLKNNKNELTQLEKLGTKSIMKILNSIEDSKKLGLDKFIFALSIKHIGQKVASFIASKVQKLSEFLKFDFDSLIQYNEIGPKIIDSVKKWLSVDNNKKLINDFLNSGMNFEHISNIKSKLLDGINIVITGTLSKPRNYFEELIKANNGNIVNSVSKKTSYVLCGENPGSKLDKANELNVKVISENDLIDMLKNKN
SIO_010081: EXC29_RS07190
subclass of: SO_0000673
so part of: EXC29_RS07190
location: complement(19450..21456)
location: region:19450-21456:-1
so has part: feature:19450-21456:-1:exon

WP_022935931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19450-21456:-1:exon

EXC29_RS03670
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03670
old locus tag: NCTC10112_00670
so part of: sequence
location: complement(21473..21970)
location: region:21473-21970:-1
so has part: feature:21473-21970:-1:exon
subclass of: SO_0000010

position:21473:-1
position: 21473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21970:-1
position: 21970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21473-21970:-1:exon

EXC29_RS03670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03670
old locus tag: NCTC10112_00670
inference: COORDINATES: protein motif:HMM:NF014420.2
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: energy-coupling factor transporter transmembrane component T
translation: MYGVILTTTILTVSTKPVFLTRAINDILYPLKLIKFPTEIITMIISIALRFIPTLLDEANRIMKAQASRGVDFKHGKLKDKTKAFIVLIVPLFVASFSKANDLADAMTSRGYDPYAKRSKYRQLGINWRDILSIFVIFGIVAMVTVCQIHSVHLPEWWIMTFHKV
SIO_010081: EXC29_RS03670
subclass of: SO_0000673
so part of: EXC29_RS03670
location: complement(21473..21970)
location: region:21473-21970:-1
so has part: feature:21473-21970:-1:exon

WP_232017786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21473-21970:-1:exon

EXC29_RS03310
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03310
old locus tag: NCTC10112_00671
pseudo: true
so part of: sequence
location: complement(22420..>23064)
location: region:22420-23064:-1
so has part: feature:22420-23064:-1:exon
subclass of: SO_0000010

position:22420:-1
position: 22420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23064:-1
position: 23064
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22420-23064:-1:exon

EXC29_RS03310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03310
old locus tag: NCTC10112_00671
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012751667.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: ATP-binding cassette domain-containing protein
SIO_010081: EXC29_RS03310
subclass of: SO_0000673
so part of: EXC29_RS03310
location: complement(22420..>23064)
location: region:22420-23064:-1
so has part: feature:22420-23064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22420-23064:-1:exon

EXC29_RS03315
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03315
old locus tag: NCTC10112_00672
pseudo: true
so part of: sequence
location: complement(<23234..23455)
location: region:23234-23455:-1
so has part: feature:23234-23455:-1:exon
subclass of: SO_0000010

position:23234:-1
position: 23234
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:23455:-1
position: 23455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23234-23455:-1:exon

EXC29_RS03315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03315
old locus tag: NCTC10112_00672
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011205953.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: ATP-binding cassette domain-containing protein
SIO_010081: EXC29_RS03315
subclass of: SO_0000673
so part of: EXC29_RS03315
location: complement(<23234..23455)
location: region:23234-23455:-1
so has part: feature:23234-23455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23234-23455:-1:exon

EXC29_RS03320
type: Gene
subclass of: SO_0000704
RO_0002162: 2121
locus tag: EXC29_RS03320
old locus tag: NCTC10112_00673
pseudo: true
so part of: sequence
location: complement(23440..>23922)
location: region:23440-23922:-1
so has part: feature:23440-23922:-1:exon
subclass of: SO_0000010

position:23440:-1
position: 23440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23922:-1
position: 23922
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23440-23922:-1:exon

EXC29_RS03320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2121
locus tag: EXC29_RS03320
old locus tag: NCTC10112_00673
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004414731.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 3
transl table: 4
product: ATP-binding cassette domain-containing protein
SIO_010081: EXC29_RS03320
subclass of: SO_0000673
so part of: EXC29_RS03320
location: complement(23440..>23922)
location: region:23440-23922:-1
so has part: feature:23440-23922:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23440-23922:-1:exon