Mesomycoplasma neurolyticum strain NCTC10166 plasmid 4.
type: Entry
definition: Mesomycoplasma neurolyticum strain NCTC10166 plasmid 4.
sequence version: NZ_LR214954.1
sequence date: 2023-03-23
sequence: sequence
division: CON
label: NZ_LR214954.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4412700
keyword: RefSeq
source: Mesomycoplasma neurolyticum (Mycoplasma neurolyticum)
organism: Mesomycoplasma neurolyticum
taxonomy: Bacteria; Mycoplasmatota; Mollicutes; Mycoplasmataceae; Mesomycoplasma.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR214954.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 03:45:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 907\nCDSs (total) :: 871\nGenes (coding) :: 859\nCDSs (with protein) :: 859\nGenes (RNA) :: 36\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 30\nncRNAs :: 2\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 5 of 12\nPseudo Genes (incomplete) :: 7 of 12\nPseudo Genes (internal stop) :: 0 of 12\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 18839
topology: linear
so has quality: SO_0000987
location: 1..18839
location: region:1-18839:1
RO_0002162: 2120

NZ_LR214954
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4412700
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18839:1
position: 18839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18839:1:source
so part of: sequence
organism: Mesomycoplasma neurolyticum
mol type: genomic DNA
strain: NCTC10166
serovar: not available: to be reported later
isolation source: Brain
host: Mouse
culture collection: NCTC:10166
type material: type strain of Mycoplasma neurolyticum
plasmid: 4
collection date: 1938

2120
type: Taxonomy
SIO_000068: taxonomy

EXC65_RS04315
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04315
old locus tag: NCTC10166_00889
so part of: sequence
location: 879..1085
location: region:879-1085:1
so has part: feature:879-1085:1:exon
subclass of: SO_0000010

position:879:1
position: 879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1085:1
position: 1085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:879-1085:1:exon

EXC65_RS04315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04315
old locus tag: NCTC10166_00889
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MINLLIFKPNLSFVEKNNFFNFKTANEIAKLNMQKELTNNYFLDQKNKMFSVYAKNGLLTQKMKHLIF
SIO_010081: EXC65_RS04315
subclass of: SO_0000673
so part of: EXC65_RS04315
location: 879..1085
location: region:879-1085:1
so has part: feature:879-1085:1:exon

WP_129720254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:879-1085:1:exon

EXC65_RS04320
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04320
old locus tag: NCTC10166_00890
so part of: sequence
location: 1225..1506
location: region:1225-1506:1
so has part: feature:1225-1506:1:exon
subclass of: SO_0000010

position:1225:1
position: 1225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1506:1
position: 1506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1225-1506:1:exon

EXC65_RS04320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04320
old locus tag: NCTC10166_00890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIIFFIENLFVNTTAFSGKILNNDDFILELDNQIELLYNLLLKQFNYGLNISAVFYKDETYLTNDSKIKNTRNFLIIHLLDKQRKIWFFNFTK
SIO_010081: EXC65_RS04320
subclass of: SO_0000673
so part of: EXC65_RS04320
location: 1225..1506
location: region:1225-1506:1
so has part: feature:1225-1506:1:exon

WP_129720255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1225-1506:1:exon

EXC65_RS04325
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04325
so part of: sequence
location: 1595..1849
location: region:1595-1849:1
so has part: feature:1595-1849:1:exon
subclass of: SO_0000010

position:1595:1
position: 1595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1849:1
position: 1849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1595-1849:1:exon

EXC65_RS04325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MLSNDYYVYTSDFFNIEEINEQFFPKFWKDKNNNGKIEPNELVVANNFTFNNKTISSKRSFLIICHTIINLLLLIILKIKNGLK
SIO_010081: EXC65_RS04325
subclass of: SO_0000673
so part of: EXC65_RS04325
location: 1595..1849
location: region:1595-1849:1
so has part: feature:1595-1849:1:exon

WP_129720256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1595-1849:1:exon

EXC65_RS04330
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04330
old locus tag: NCTC10166_00891
so part of: sequence
location: 1868..2413
location: region:1868-2413:1
so has part: feature:1868-2413:1:exon
subclass of: SO_0000010

position:1868:1
position: 1868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2413:1
position: 2413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1868-2413:1:exon

EXC65_RS04330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04330
old locus tag: NCTC10166_00891
inference: COORDINATES: protein motif:HMM:NF016085.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF402 domain-containing protein
translation: METHKLEKYFNVQAYKYNGKLYRQWNGVRIIDDKKNYLVAYMNKKTRVQEKKTHRWNIKSNTLWFFHKYNFFNAIVTIEGNKNYIYVNLASPFFMEDDTIKYIDFDLDIKVYHGKEINIIDKNEFFMNAKKMDYSKKLTKLIFEELKKIVDLYYSSEFIFDNKFLSKYIKKIKIINSKKSF
SIO_010081: EXC65_RS04330
subclass of: SO_0000673
so part of: EXC65_RS04330
location: 1868..2413
location: region:1868-2413:1
so has part: feature:1868-2413:1:exon

WP_129720134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1868-2413:1:exon

EXC65_RS04335
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04335
old locus tag: NCTC10166_00892
so part of: sequence
location: 2608..4776
location: region:2608-4776:1
so has part: feature:2608-4776:1:exon
subclass of: SO_0000010

position:2608:1
position: 2608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4776:1
position: 4776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2608-4776:1:exon

EXC65_RS04335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04335
old locus tag: NCTC10166_00892
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DUF262 domain-containing protein
translation: MEIVKNNIAELLFKNNIQYIIPVYQRNYDWQKEHCEELFDDVFETEEKNKQHFLGSIVLVEDEKINNLRVFSIVDGQQRLTTIYLLLKALYDTLDNGNDFESKNQMQQIEELLFNFSTFDEIHLQNKLKLKPISSDNKQLIYLMTNKLSERDLDSNIWKNYNHFMYLFKKKLEFYSYSELATIIFNSIKKLTIVFIMLDNKNDDPQEIFERINSTGKELMLSDLIRNSLLLGADEANEKAYNDYWVPMEELLKKDELFDEYIKSFLYFAGTLKHEEKRKGKNKKNWYKIFKRYLENKTKLDVLQDLYKFSQYFYAIKKRHDIFSPVVNNLLNKINVFAPDDSYPLFYWILDDYKNKIIDEKVLVNTLKFFINYFVRQSIAKVNATYNEIFIQFHEKAFKNKIKNNENYLLSLMEFVKTLHSYPTYKMPTPQDVHNALIDKQLLGLKNKDYLGYTILNIAEKGFANWAEDSTRLSIKNKAYKKLIYPILATNWKDALGLEYTYLNENYFGLIGNWAMLRSQPTKNEKNDSISNLLKDKILLLDNFEYSKTNSTILNAINWKESEIKERTELLADFFKLEIKHDFDELVNLIPKIQNINDNEFKIIDNTMYTTLSVDNIYDTNDKIPIQYSLFGEEKQINHWMEILTNIIKKLYEFVNQAIFSFGLPFISNERGLENDGRVIGDVYINTQISTNEILDNIKILIQKVPIFTNGNLIITFKLNNK
SIO_010081: EXC65_RS04335
subclass of: SO_0000673
so part of: EXC65_RS04335
location: 2608..4776
location: region:2608-4776:1
so has part: feature:2608-4776:1:exon

WP_129720135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2608-4776:1:exon

EXC65_RS04340
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04340
old locus tag: NCTC10166_00893
so part of: sequence
location: 5443..7005
location: region:5443-7005:1
so has part: feature:5443-7005:1:exon
subclass of: SO_0000010

position:5443:1
position: 5443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7005:1
position: 7005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5443-7005:1:exon

EXC65_RS04340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04340
old locus tag: NCTC10166_00893
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012560330.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I SAM-dependent DNA methyltransferase
translation: MSKQNIEINYIDSIKEKLWKSCDEMRGNVPSEQYMHIIIAIIFLKAMSDKYEKAGEQIRKKYLNDGERKWLLAKKDLNLLKRYDVQFIVPESASWSNIQKYISKEEIGIKIDEALLALEEQNNSLKGLFEKNFSREDLDKQRLSKVIKQFSDINFSELKEDFIGRLYEYFLGNFFRKQGQNGGEFYTPQSIVELMVALLAPDSDSKIYDPACGTGGMFVQAKKYLEKHKKDITQMRVYGQEFSSTTWKLAKINLILNGFDPDDTHLGSKAESTFKEDLSGFEQFDIVLANPPFNLKIWENENASDDPRYKWGLPPTKNANYAWLSHILYKLNENGRAAVILANGALSSSQKEELSIRKKMLEENKIEAIISLPDKLFYTTGIPATIWIFNNNKLNDDVIFINAENLGELATKKLRVFNTENINEIVSAYNDAKLNKDFSIKGFAKRVSLNEIKENDYSLVPGRYIDLLEEEVDKEQLKAEILEIQNELKILFKEFTDLIPDVEKSIEQAIKFADEQEKEK
SIO_010081: EXC65_RS04340
subclass of: SO_0000673
so part of: EXC65_RS04340
location: 5443..7005
location: region:5443-7005:1
so has part: feature:5443-7005:1:exon

WP_129719500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5443-7005:1:exon

EXC65_RS04345
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04345
old locus tag: NCTC10166_00894
so part of: sequence
location: 7111..8256
location: region:7111-8256:1
so has part: feature:7111-8256:1:exon
subclass of: SO_0000010

position:7111:1
position: 7111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8256:1
position: 8256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7111-8256:1:exon

EXC65_RS04345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04345
old locus tag: NCTC10166_00894
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MKQIQNTNIFKLEEIAKFYLGKILKKPTESKGEYPLISSTSKNDGIIGKVETFNFQNCITLPRLGIEDNIFITLRKYKFSATSHLIIVKPNKNIVILDFLYLLLKSLNAKISQYAIEGDLIKRLSLKKLKSLKLSIPELSIQKEIVQNWKKTNESLVFFEKFFENPIFQINNLLVKTLNYVMNKSNKQNYLLSDLLDKQKPYKMGKINFESDDKKNNLYILTYKSFKNNNLNDKMTFYDEKLESFFANKNDVFFTRFPEPSFGIQNIYEENSAVFDSSLVKLNIDETKIQKDFFKYFNYSNFWLNWKQKNKTSTLLGGINFLTILNLTLSLPTLANQQKMILIINKLEKLIKILTNIQNKIQKIILINNQIIFKKIKERSS
SIO_010081: EXC65_RS04345
subclass of: SO_0000673
so part of: EXC65_RS04345
location: 7111..8256
location: region:7111-8256:1
so has part: feature:7111-8256:1:exon

WP_129719499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7111-8256:1:exon

EXC65_RS04350
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04350
old locus tag: NCTC10166_00895
so part of: sequence
location: 8257..8811
location: region:8257-8811:1
so has part: feature:8257-8811:1:exon
subclass of: SO_0000010

position:8257:1
position: 8257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8811:1
position: 8811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8257-8811:1:exon

EXC65_RS04350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04350
old locus tag: NCTC10166_00895
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MAIYKLGEIIQVISGNSKLTKKYVDVNNGEFGVVSSSSFNNGIFGYINTFMYEKGITISKDGSIGNVFWQDKPFSINTGAFLVKPKDLSIISEKYLFFLLKTKEKRLKQIGDGSVIKHIYAKDINNLEAIIPDLKTQNSIIDIIEFWISKGGILMLNFFTKLKFKFFCVVPEENFKKLFLFFIK
SIO_010081: EXC65_RS04350
subclass of: SO_0000673
so part of: EXC65_RS04350
location: 8257..8811
location: region:8257-8811:1
so has part: feature:8257-8811:1:exon

WP_129720137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8257-8811:1:exon

EXC65_RS04645
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04645
old locus tag: NCTC10166_00896
pseudo: true
so part of: sequence
location: complement(<8733..9152)
location: region:8733-9152:-1
so has part: feature:8733-9152:-1:exon
subclass of: SO_0000010

position:8733:-1
position: 8733
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:9152:-1
position: 9152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8733-9152:-1:exon

EXC65_RS04645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04645
old locus tag: NCTC10166_00896
inference: COORDINATES: protein motif:HMM:NF013579.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
SIO_010081: EXC65_RS04645
subclass of: SO_0000673
so part of: EXC65_RS04645
location: complement(<8733..9152)
location: region:8733-9152:-1
so has part: feature:8733-9152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8733-9152:-1:exon

EXC65_RS04360
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04360
old locus tag: NCTC10166_00897
so part of: sequence
location: 9237..9533
location: region:9237-9533:1
so has part: feature:9237-9533:1:exon
subclass of: SO_0000010

position:9237:1
position: 9237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9533:1
position: 9533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9237-9533:1:exon

EXC65_RS04360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04360
old locus tag: NCTC10166_00897
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MNKIVKFLKGKNIKQNETLENGEFNVYSSKTKNNGIFGKLNTFIFDNEYILITSHGPYAGTVIYVNEKFSTTSNSFVLKLDNNIVDTKFLFYLLKMSN
SIO_010081: EXC65_RS04360
subclass of: SO_0000673
so part of: EXC65_RS04360
location: 9237..9533
location: region:9237-9533:1
so has part: feature:9237-9533:1:exon

WP_165001349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9237-9533:1:exon

EXC65_RS04365
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04365
old locus tag: NCTC10166_00898
so part of: sequence
location: 9860..11422
location: region:9860-11422:1
so has part: feature:9860-11422:1:exon
subclass of: SO_0000010

position:9860:1
position: 9860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11422:1
position: 11422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9860-11422:1:exon

EXC65_RS04365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04365
old locus tag: NCTC10166_00898
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012560330.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I SAM-dependent DNA methyltransferase
translation: MSKQNIEINYIDSIKEKLWKSCDEMKGKVSSEQYMHIIIAIIFLKAMSDKYEKAGEQIRKKYLNDGERKWLLAKKDLNLLKRYDVQFIVPESASWSNIQKYISKEEIGIKIDEALLALEEQNNSLKGLFEKNFSREDLDKQKLSKVIKQFSDINFSELKEDFIGGLYEYFLGNFFRKQGQNGAEFYTPQSIVELMVAILAPDSDSKIYDPACGTGGMFVQAKKYLEKHKKDITQMRVYGQEFSSTTWKLAKINLILNGFDPDDTYLGSKAESTFKEDLSGFEQFDIVLANPPFNLEIWENENASDDPRYKWGLPPATNANYAWLSHILYKLNKNGRAAVILANGALSSSQKEELSIRKKMLEENKIEAIISLPVKLFYTTTIPATIWIFNNNKLNDDVIFINAENLGELATKKLRVFNTENINEIVSAYNDAKLNKDFSIKGFAKRVSLNEIKENDYSLVPGRYIDLLEEEVDKEQLKAEILEIENELEILFNEFTNLIPDVKKSIKKAIKFANEQEKEK
SIO_010081: EXC65_RS04365
subclass of: SO_0000673
so part of: EXC65_RS04365
location: 9860..11422
location: region:9860-11422:1
so has part: feature:9860-11422:1:exon

WP_129720139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9860-11422:1:exon

EXC65_RS04370
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04370
old locus tag: NCTC10166_00899
so part of: sequence
location: 12131..12865
location: region:12131-12865:1
so has part: feature:12131-12865:1:exon
subclass of: SO_0000010

position:12131:1
position: 12131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12865:1
position: 12865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12131-12865:1:exon

EXC65_RS04370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04370
old locus tag: NCTC10166_00899
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKLYKELSIKKRPTEEKNMFKIIKNMFNEVKKGREYTLYIAEDDRTIIEIDSNKELDKLLEKHPEIFKDIKYNKTKSKLFMNNLNETYFLKRVINVYENIKIASYWYNRVNNKLYIVTRSDIKSKYGYKTKDKKIDYIPLFEPVKIIYKIYQAKVLYVREAFVYASILTALFLNKKSQEILKTNSKLRNFKLEVTEKRIMSRTVIMNRVKLEQKNHIIRYDDVENYRYTMGESWDKITYKFKEK
SIO_010081: EXC65_RS04370
subclass of: SO_0000673
so part of: EXC65_RS04370
location: 12131..12865
location: region:12131-12865:1
so has part: feature:12131-12865:1:exon

WP_129720140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12131-12865:1:exon

EXC65_RS04375
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04375
old locus tag: NCTC10166_00901
so part of: sequence
location: complement(13575..13862)
location: region:13575-13862:-1
so has part: feature:13575-13862:-1:exon
subclass of: SO_0000010

position:13575:-1
position: 13575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13862:-1
position: 13862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13575-13862:-1:exon

EXC65_RS04375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04375
old locus tag: NCTC10166_00901
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MQWCKRNKGIYDIYSSKTIDEKPITKINEYDFEDYYITIAGSGANCGKFFYRKGKFSIMQSVWLIVNNQTLSLTNIFIFYLEIKKDERFGKRISA
SIO_010081: EXC65_RS04375
subclass of: SO_0000673
so part of: EXC65_RS04375
location: complement(13575..13862)
location: region:13575-13862:-1
so has part: feature:13575-13862:-1:exon

WP_129720257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13575-13862:-1:exon

EXC65_RS04380
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
gene: rpsT
locus tag: EXC65_RS04380
pseudo: true
so part of: sequence
location: complement(14084..14361)
location: region:14084-14361:-1
so has part: feature:14084-14361:-1:exon
subclass of: SO_0000010

position:14084:-1
position: 14084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14361:-1
position: 14361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14084-14361:-1:exon

EXC65_RS04380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
gene: rpsT
locus tag: EXC65_RS04380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011265040.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: 30S ribosomal protein S20
SIO_010081: EXC65_RS04380
subclass of: SO_0000673
so part of: EXC65_RS04380
location: complement(14084..14361)
location: region:14084-14361:-1
so has part: feature:14084-14361:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14084-14361:-1:exon

EXC65_RS04385
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04385
old locus tag: NCTC10166_00903
so part of: sequence
location: 14728..15093
location: region:14728-15093:1
so has part: feature:14728-15093:1:exon
subclass of: SO_0000010

position:14728:1
position: 14728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15093:1
position: 15093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14728-15093:1:exon

EXC65_RS04385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04385
old locus tag: NCTC10166_00903
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKIIKYYLRRTNVVNSSIYEYVNDVVEENNLGLILYSANGKIIWISSFIKKRFGEQIIGKSVDFLFNDEKQNSNLNILDYEWDYKHSGFEYRIKKYNDKNIITISDVTISENILKNYINEK
SIO_010081: EXC65_RS04385
subclass of: SO_0000673
so part of: EXC65_RS04385
location: 14728..15093
location: region:14728-15093:1
so has part: feature:14728-15093:1:exon

WP_129720258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14728-15093:1:exon

EXC65_RS04390
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04390
old locus tag: NCTC10166_00904
so part of: sequence
location: 15126..16166
location: region:15126-16166:1
so has part: feature:15126-16166:1:exon
subclass of: SO_0000010

position:15126:1
position: 15126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16166:1
position: 16166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15126-16166:1:exon

EXC65_RS04390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04390
old locus tag: NCTC10166_00904
inference: COORDINATES: protein motif:HMM:NF013528.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DHH family phosphoesterase
translation: MLSTVMVQEDFFKYQITAVNLLEEISSKMNFSYKQYANGKFLLITNYENFAKFRTKNFDTFKEIETKLSNYKVANQPITFSIGFAYGTDEILKLNQLAKDALLFSKTRGGNQVTVFKYGNKPIVYGSNMEIEPSISRSELNYVSKNLLNRLKKPEIKNIIIYGHKFSDLDALGSAYGLGHFLVNYSKYKYKQKKNFYIQNSTFDTTTEMFIRANINFFPDKIFIKPSVAKKMTDENTIVIMVDTADRKRIENEDAFAKTKPENVFIFDHHRIGDQNLEFISSGNEYIDTTTSSTSEIVTDIINLYTTSEVKFIDSFIAQMLLNGIYMDTKQFSKSTSTKTLMQQHF
SIO_010081: EXC65_RS04390
subclass of: SO_0000673
so part of: EXC65_RS04390
location: 15126..16166
location: region:15126-16166:1
so has part: feature:15126-16166:1:exon

WP_129720259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15126-16166:1:exon

EXC65_RS04395
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04395
old locus tag: NCTC10166_00905
so part of: sequence
location: 16166..16582
location: region:16166-16582:1
so has part: feature:16166-16582:1:exon
subclass of: SO_0000010

position:16582:1
position: 16582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16166-16582:1:exon

EXC65_RS04395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04395
old locus tag: NCTC10166_00905
inference: COORDINATES: protein motif:HMM:NF014342.2
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DHHA1 domain-containing protein
translation: MTYGAQSKISVETLKYSEEIFNLIKELTYKHEEVKPGYLMAYSKQEADIDVISMAADFMLNVQGRQAVFIIAKIKNGDKYKMSARSNGTANVQIIAERVGGGGHFAASAAESSGETLEVFVDNIRQAIVSVKNESNNN
SIO_010081: EXC65_RS04395
subclass of: SO_0000673
so part of: EXC65_RS04395
location: 16166..16582
location: region:16166-16582:1
so has part: feature:16166-16582:1:exon

WP_276310804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16166-16582:1:exon

EXC65_RS04400
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04400
old locus tag: NCTC10166_00906
so part of: sequence
location: 16563..16766
location: region:16563-16766:1
so has part: feature:16563-16766:1:exon
subclass of: SO_0000010

position:16563:1
position: 16563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16766:1
position: 16766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16563-16766:1:exon

EXC65_RS04400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04400
old locus tag: NCTC10166_00906
inference: COORDINATES: protein motif:HMM:NF013449.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: bL9 family ribosomal protein
translation: MKVIIIKEFNKDYKLNQVVEVSDGYAKNFLIKNGYALPVNKTTTLFLEKRMKKKTIKLNKKLKKRSN
SIO_010081: EXC65_RS04400
subclass of: SO_0000673
so part of: EXC65_RS04400
location: 16563..16766
location: region:16563-16766:1
so has part: feature:16563-16766:1:exon

WP_129720261.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16563-16766:1:exon

EXC65_RS04405
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04405
old locus tag: NCTC10166_00907
so part of: sequence
location: 17102..17401
location: region:17102-17401:1
so has part: feature:17102-17401:1:exon
subclass of: SO_0000010

position:17102:1
position: 17102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17401:1
position: 17401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17102-17401:1:exon

EXC65_RS04405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04405
old locus tag: NCTC10166_00907
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MILLTKNKIVLKHEWFIFCFKNCWSNYILNWINEKNANSYVKEVSDLLIYLEDAPYYSTVREAMSLLIEKSNLRKAKIAIDFAVKKSTLMKQLMQKYFK
SIO_010081: EXC65_RS04405
subclass of: SO_0000673
so part of: EXC65_RS04405
location: 17102..17401
location: region:17102-17401:1
so has part: feature:17102-17401:1:exon

WP_129720262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17102-17401:1:exon

EXC65_RS04695
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04695
old locus tag: NCTC10166_00908
so part of: sequence
location: 17529..17825
location: region:17529-17825:1
so has part: feature:17529-17825:1:exon
subclass of: SO_0000010

position:17529:1
position: 17529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17825:1
position: 17825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17529-17825:1:exon

EXC65_RS04695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04695
old locus tag: NCTC10166_00908
inference: COORDINATES: protein motif:HMM:NF015736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DnaB-like helicase C-terminal domain-containing protein
translation: MSTGFPSLDRITSGLQNGDLIILAARPSMGKTAMALNLARNAVENDKTCAFFSLEMQASQLVTRILASNTGIEGNSFKKPHLLTSYEWLNISEHIKKN
SIO_010081: EXC65_RS04695
subclass of: SO_0000673
so part of: EXC65_RS04695
location: 17529..17825
location: region:17529-17825:1
so has part: feature:17529-17825:1:exon

WP_276310805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17529-17825:1:exon

EXC65_RS04700
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04700
old locus tag: NCTC10166_00909
so part of: sequence
location: 17860..18315
location: region:17860-18315:1
so has part: feature:17860-18315:1:exon
subclass of: SO_0000010

position:17860:1
position: 17860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18315:1
position: 18315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17860-18315:1:exon

EXC65_RS04700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04700
old locus tag: NCTC10166_00909
inference: COORDINATES: protein motif:HMM:NF015736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: DnaB-like helicase C-terminal domain-containing protein
translation: MKLHELIWKTKKLMNRIKKIDLIIVDYLQLIDLASSGNNRQVEVSKISRQLKQLAREINCPVIALSQLSRKVEEREDKRPLMSDLRESGAIEQDADIVAFLHRPNYYKKDVPKNEIQDTNLIIAKHRNGATGDIVLQFDPKIGLFFEEGES
SIO_010081: EXC65_RS04700
subclass of: SO_0000673
so part of: EXC65_RS04700
location: 17860..18315
location: region:17860-18315:1
so has part: feature:17860-18315:1:exon

WP_129720264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17860-18315:1:exon

EXC65_RS04510
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04510
so part of: sequence
location: 18315..18476
location: region:18315-18476:1
so has part: feature:18315-18476:1:exon
subclass of: SO_0000010

position:18476:1
position: 18476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18315-18476:1:exon

EXC65_RS04510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MQDLKLIILSLLIFILVIISSLSSASETSFLSIKQPNLKIILKINTNSLKRKF
SIO_010081: EXC65_RS04510
subclass of: SO_0000673
so part of: EXC65_RS04510
location: 18315..18476
location: region:18315-18476:1
so has part: feature:18315-18476:1:exon

WP_165001365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18315-18476:1:exon

EXC65_RS04420
type: Gene
subclass of: SO_0000704
RO_0002162: 2120
locus tag: EXC65_RS04420
so part of: sequence
location: 18479..18664
location: region:18479-18664:1
so has part: feature:18479-18664:1:exon
subclass of: SO_0000010

position:18479:1
position: 18479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18664:1
position: 18664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18479-18664:1:exon

EXC65_RS04420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2120
locus tag: EXC65_RS04420
inference: COORDINATES: protein motif:HMM:NF013741.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: CNNM domain-containing protein
translation: MHKKFSGTLSTILLINNIVNIAASATMSAIVSSLSLNNNWEILYQTAIMTPIIVLIGWNYP
SIO_010081: EXC65_RS04420
subclass of: SO_0000673
so part of: EXC65_RS04420
location: 18479..18664
location: region:18479-18664:1
so has part: feature:18479-18664:1:exon

WP_165001366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18479-18664:1:exon