Malacoplasma iowae strain NCTC10185 chromosome 1.
Bacteria; Tenericutes; Mycoplasmoidales; Mycoplasmoidaceae; Malacoplasma.
Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nLR215023.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/07/2022 03:29:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,036\nCDSs (total) :: 1,001\nGenes (coding) :: 988\nCDSs (with protein) :: 988\nGenes (RNA) :: 35\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 29\nncRNAs :: 3\nPseudo Genes (total) :: 13\nCDSs (without protein) :: 13\nPseudo Genes (ambiguous residues) :: 0 of 13\nPseudo Genes (frameshifted) :: 0 of 13\nPseudo Genes (incomplete) :: 12 of 13\nPseudo Genes (internal stop) :: 1 of 13\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_004024805.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006785409.1
COORDINATES: similar to AA sequence:RefSeq:WP_002379278.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_004024801.1
GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit A
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF033563.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002318096.1
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF013045.2
COORDINATES: protein motif:HMM:NF016116.2
lipoprotein 17-related variable surface protein
COORDINATES: protein motif:HMM:NF018155.2
COORDINATES: protein motif:HMM:NF012349.2
COORDINATES: similar to AA sequence:RefSeq:WP_011883492.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: similar to AA sequence:RefSeq:WP_001265708.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01956.2
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_004024715.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011077779.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019887.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077774.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024709.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077772.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077771.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002351833.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011077830.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009885837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077828.1
COORDINATES: similar to AA sequence:RefSeq:WP_005674265.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113285.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113286.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004424359.1
COORDINATES: protein motif:HMM:NF013027.2
COORDINATES: similar to AA sequence:RefSeq:WP_016660790.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002878195.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113291.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077819.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113294.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077816.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014574383.1
COORDINATES: similar to AA sequence:RefSeq:WP_003133760.1
COORDINATES: similar to AA sequence:RefSeq:WP_010869361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077812.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077810.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077809.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005487032.1
COORDINATES: similar to AA sequence:RefSeq:WP_009125149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014886597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077806.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011077805.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00716.1
GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:NF013786.2
COORDINATES: protein motif:HMM:NF013860.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076972.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF014700.2
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF014244.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001688.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001183.0
COORDINATES: similar to AA sequence:RefSeq:WP_011077132.1
COORDINATES: protein motif:HMM:NF004076.0
COORDINATES: similar to AA sequence:RefSeq:WP_011077408.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077407.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077026.1
COORDINATES: protein motif:HMM:NF002211.1
GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018914.2
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077434.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004423164.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006863552.1
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076865.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009885966.1
COORDINATES: similar to AA sequence:RefSeq:WP_011884843.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_004024642.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00029.2
COORDINATES: protein motif:HMM:NF036572.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076876.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076877.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076985.1
COORDINATES: protein motif:HMM:NF013216.2
transcription antitermination protein NusB
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076990.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_011077739.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011076969.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00398.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: protein motif:HMM:NF024257.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077752.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077751.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
phosphate transport system regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077325.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077326.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_011113518.1
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: similar to AA sequence:RefSeq:WP_012498071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077734.1
COORDINATES: protein motif:HMM:NF018604.2
COORDINATES: similar to AA sequence:RefSeq:WP_011113843.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF004490.0
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076934.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: similar to AA sequence:RefSeq:WP_004025227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025148.1
COORDINATES: protein motif:HMM:NF019290.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077198.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010874985.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_011077200.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF012372.2
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077212.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_009885670.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077231.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011883591.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025213.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025215.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025309.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025448.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025447.1
COORDINATES: protein motif:HMM:NF014914.2
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077568.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077567.1
SufD family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077566.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:TIGR01994.1
GO:0005198 - structural molecule activity [Evidence IEA]
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077564.1
COORDINATES: protein motif:HMM:NF020750.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077191.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077192.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025433.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF015563.2
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02152.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077307.1
COORDINATES: similar to AA sequence:RefSeq:WP_010874781.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_011077309.1
COORDINATES: protein motif:HMM:NF017509.2
COORDINATES: similar to AA sequence:RefSeq:WP_004025425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025423.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076942.1
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_002804494.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015736.2
GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003592.0
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF014716.2
aspartyl/glutamyl-tRNA amidotransferase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_011077037.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077038.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF013658.2
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF022063.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024530.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012498485.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF014575.2
GO:0005575 - cellular_component [Evidence IEA]
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077079.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024914.1
COORDINATES: protein motif:HMM:NF016689.2
GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (adenine(22)-N(1))-methyltransferase TrmK
COORDINATES: protein motif:HMM:NF013909.2
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077737.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077759.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076996.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012610.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010874981.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025377.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076998.1
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077756.1
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF012621.2
heavy-metal-associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR01525.1
COORDINATES: protein motif:HMM:NF026098.2
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:TIGR04527.1
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025267.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_004398583.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: similar to AA sequence:RefSeq:WP_004025276.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025277.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077401.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025279.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077710.1
GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013591.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077292.1
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076891.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00536.1
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:NF013468.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076894.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077634.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: similar to AA sequence:RefSeq:WP_005380323.1
COORDINATES: protein motif:HMM:NF012481.2
COORDINATES: similar to AA sequence:RefSeq:WP_003245322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025101.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077092.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025099.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: similar to AA sequence:RefSeq:WP_008394622.1
COORDINATES: protein motif:HMM:TIGR00506.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_008394619.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076911.1
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF024702.2
leucine-rich repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077730.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025459.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025460.1
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF012579.2
COORDINATES: protein motif:HMM:NF019736.2
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF014368.2
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014437.2
COORDINATES: protein motif:HMM:NF012457.2
COORDINATES: protein motif:HMM:NF039260.1
MupG family TIM beta-alpha barrel fold protein
COORDINATES: protein motif:HMM:NF014326.2
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_004025240.1
COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014881.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: nucleotide motif:Rfam:14.4:RF00559
ribosomal protein L21 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011077266.1
COORDINATES: protein motif:HMM:NF016233.2
ribosomal-processing cysteine protease Prp
COORDINATES: similar to AA sequence:RefSeq:WP_014574615.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077273.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024958.1
COORDINATES: protein motif:HMM:NF013030.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024989.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077443.1
COORDINATES: protein motif:HMM:NF014795.2
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: protein motif:HMM:NF014679.2
GO:0016740 - transferase activity [Evidence IEA]
DegV family EDD domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077327.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013514.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077332.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004025409.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004025408.1
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004025407.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00545.1
GO:0017118 - lipoyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025402.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025403.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025401.1
COORDINATES: similar to AA sequence:RefSeq:WP_014574526.1
COORDINATES: protein motif:HMM:NF013703.2
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077460.1
COORDINATES: similar to AA sequence:RefSeq:WP_002881786.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011883861.1
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004024932.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:NF019156.2
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013356.2
COORDINATES: similar to AA sequence:RefSeq:WP_005875762.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076950.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077465.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015170.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024830.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:TIGR01704.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_004025131.1
COORDINATES: similar to AA sequence:RefSeq:WP_002881294.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:NF024634.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077331.1
tRNA 2-thiocytidine biosynthesis TtcA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077180.1
COORDINATES: protein motif:HMM:NF014690.2
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: similar to AA sequence:RefSeq:WP_012855781.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01061.1
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077282.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015893.2
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:NF012587.2
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077384.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:TIGR03561.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF012398.2
immunoglobulin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004024983.1
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF013408.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF021375.2
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024922.1
COORDINATES: protein motif:HMM:NF012770.2
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024842.2
COORDINATES: protein motif:HMM:NF012402.2
iron-sulfur cluster-binding domain-containing protein
COORDINATES: protein motif:HMM:NF022521.2
COORDINATES: protein motif:HMM:TIGR01499.1
dihydrofolate:folylpolyglutamate synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_011077174.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077204.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: similar to AA sequence:RefSeq:WP_001156491.1
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR
COORDINATES: similar to AA sequence:RefSeq:WP_011077611.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
aspartate carbamoyltransferase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011077610.1
GO:0004151 - dihydroorotase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077609.1
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004024550.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077607.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077690.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024783.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077321.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077320.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: protein motif:HMM:NF013068.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF021109.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03639.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type II CRISPR-associated endonuclease Cas1
COORDINATES: protein motif:HMM:TIGR01865.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
Cas9, originally named Csn1, is the large, multifunctional signature protein of type II CRISPR/Cas systems. It is well known even to general audiences because its RNA-guided endonuclease activity has made it a popular tool for custom editing of eukaryotic genomes; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II CRISPR RNA-guided endonuclease Cas9
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:TIGR04525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077597.1
1-phosphofructokinase family hexose kinase
COORDINATES: protein motif:HMM:TIGR01427.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
fructose-specific PTS transporter subunit EIIC
COORDINATES: protein motif:HMM:NF018964.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004025368.1
COORDINATES: protein motif:HMM:NF023495.2
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076903.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076902.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076901.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076899.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076897.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: similar to AA sequence:RefSeq:WP_011077263.1
COORDINATES: protein motif:HMM:NF036621.2
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024583.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002080.0
COORDINATES: similar to AA sequence:RefSeq:WP_044891272.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077404.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF013308.2
GO:0070567 - cytidylyltransferase activity [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF015866.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077696.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024783.1
COORDINATES: protein motif:HMM:NF015820.2
COORDINATES: similar to AA sequence:RefSeq:WP_014574377.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113883.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425067.1
GO:0009019 - tRNA (guanine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_010875017.1
COORDINATES: protein motif:HMM:NF012578.2
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024967.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF014582.2
COORDINATES: similar to AA sequence:RefSeq:WP_004025236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025046.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010874599.1
COORDINATES: similar to AA sequence:RefSeq:WP_002436798.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014838.2
COORDINATES: similar to AA sequence:RefSeq:WP_004025054.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076887.1
COORDINATES: similar to AA sequence:RefSeq:WP_004025056.1
COORDINATES: protein motif:HMM:TIGR01145.1
COORDINATES: protein motif:HMM:NF012645.2
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025059.1
COORDINATES: protein motif:HMM:NF012347.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077235.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077747.1
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
GO:0006747 - FAD biosynthetic process [Evidence IEA]; GO:0009398 - FMN biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077216.1
COORDINATES: similar to AA sequence:RefSeq:WP_009885961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014886079.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013843.2
COORDINATES: similar to AA sequence:RefSeq:WP_011113311.1
COORDINATES: protein motif:HMM:NF021546.2
COORDINATES: similar to AA sequence:RefSeq:WP_000219438.1
COORDINATES: protein motif:HMM:NF021553.2
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077011.1
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012855607.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077177.1
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: similar to AA sequence:RefSeq:WP_004025086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077629.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_044891192.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004024942.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03596.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076878.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025141.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077220.1
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077717.1
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF022868.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024952.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077385.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077386.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: similar to AA sequence:RefSeq:WP_011077387.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077388.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024733.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077128.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_011077127.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014130.2
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076939.1
COORDINATES: protein motif:HMM:NF016204.2
COORDINATES: protein motif:HMM:TIGR01953.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077718.1
low molecular weight phosphotyrosine protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_011076962.1
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF014627.2
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF001591.0
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077658.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077151.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077836.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025207.1
GO:0015969 - guanosine tetraphosphate metabolic process [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010874716.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113377.1
COORDINATES: similar to AA sequence:RefSeq:WP_044891269.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_044891236.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077164.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015377.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011077765.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025146.1
COORDINATES: protein motif:HMM:NF019289.2
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_011113875.1
GO:0004071 - aspartate-ammonia ligase activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076949.1
COORDINATES: protein motif:HMM:NF013772.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024856.1
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004024863.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024862.1
COORDINATES: protein motif:HMM:NF015777.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077671.1
U32 family peptidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013316.2
COORDINATES: protein motif:HMM:NF013742.2
COORDINATES: protein motif:HMM:NF015319.2
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077625.1
COORDINATES: protein motif:HMM:NF015607.2
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077675.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077646.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077758.1
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011077000.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077001.1
N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_011077106.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF025873.2
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077108.1
COORDINATES: protein motif:HMM:NF024491.2
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00649.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014510.2
DNA integrity scanning protein DisA nucleotide-binding domain protein
COORDINATES: protein motif:HMM:NF013383.2
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009885980.1
COORDINATES: protein motif:HMM:TIGR00017.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077102.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_011076842.1
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0009225 - nucleotide-sugar metabolic process [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase GalU
COORDINATES: protein motif:HMM:NF012436.2
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013015.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009885993.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077682.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF014128.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113718.1
COORDINATES: protein motif:HMM:NF001080.0
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_004025381.1
COORDINATES: protein motif:HMM:TIGR00671.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077616.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: similar to AA sequence:RefSeq:WP_004024984.1
COORDINATES: protein motif:HMM:NF015552.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024810.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077760.1
GO:0043822 - ribonuclease M5 activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077761.1
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113607.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF020341.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024817.1
COORDINATES: protein motif:HMM:NF001752.0
GO:0051287 - NAD binding [Evidence IEA]; GO:0070403 - NAD+ binding [Evidence IEA]; GO:0034979 - NAD-dependent protein deacetylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016000.2
COORDINATES: protein motif:HMM:NF001808.0
GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011076961.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF013421.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076955.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011076954.1
GO:0009381 - excinuclease ABC activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: protein motif:HMM:TIGR00042.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_011076904.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00552.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113699.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077115.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077114.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077513.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002942223.1
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024764.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024765.1
COORDINATES: protein motif:HMM:NF012455.2
COORDINATES: similar to AA sequence:RefSeq:WP_004024768.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_011076905.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011077623.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077624.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF014494.2
decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine; Derived by automated computational analysis using gene prediction method: Protein Homology.
phosphopantothenoylcysteine decarboxylase
COORDINATES: protein motif:HMM:NF016051.2
COORDINATES: protein motif:HMM:NF015039.2
COORDINATES: protein motif:HMM:TIGR00872.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF012695.2
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF014850.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013431.2
galactose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025344.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010874584.1
COORDINATES: similar to AA sequence:RefSeq:WP_014325411.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076855.1
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_011077792.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
energy-coupling factor transporter ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_003115263.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01169.1
COORDINATES: similar to AA sequence:RefSeq:WP_011076851.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077741.1
COORDINATES: protein motif:HMM:NF020509.2
COORDINATES: protein motif:HMM:NF014022.2
COORDINATES: protein motif:HMM:NF018367.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011076921.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077433.1
COORDINATES: protein motif:HMM:NF014728.2
COORDINATES: protein motif:HMM:NF014699.2
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025025.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: protein motif:HMM:TIGR00680.1
potassium-transporting ATPase subunit KdpA
COORDINATES: protein motif:HMM:TIGR02506.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF012490.2
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_014886202.1
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077431.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010874663.1
COORDINATES: similar to AA sequence:RefSeq:WP_161597823.1
acetyl-CoA hydrolase/transferase family protein
COORDINATES: protein motif:HMM:NF013722.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: similar to AA sequence:RefSeq:WP_011884546.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF013340.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077838.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011077839.1
COORDINATES: protein motif:HMM:NF014588.2
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_011077841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077843.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024623.1
COORDINATES: similar to AA sequence:RefSeq:WP_011113924.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019469841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077847.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
DNA-directed RNA polymerase subunit delta
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077850.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012509.2
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_011077853.1
COORDINATES: protein motif:HMM:TIGR00188.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011113236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024806.1