Simplicispira suum strain SC1-8 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Simplicispira.
Submitted (09-MAR-2018) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP027671.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2018\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 159.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 22:45:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,904\nCDSs (total) :: 3,840\nGenes (coding) :: 3,747\nCDSs (with protein) :: 3,747\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 50 of 93\nPseudo Genes (incomplete) :: 47 of 93\nPseudo Genes (internal stop) :: 7 of 93\nPseudo Genes (multiple problems) :: 9 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008614962.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018513503.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF036525.2
TetR/AcrR family transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011487902.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182235.1
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: similar to AA sequence:RefSeq:WP_011493437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487915.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248119.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: protein motif:HMM:NF039446.1
COORDINATES: protein motif:HMM:NF039436.1
COORDINATES: protein motif:HMM:NF040097.1
COORDINATES: protein motif:HMM:NF039772.1
GTPase-associated system all-helical protein GASH
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040692.1
COORDINATES: similar to AA sequence:RefSeq:WP_012204584.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF024830.2
COORDINATES: similar to AA sequence:RefSeq:WP_011805842.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015768356.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013542038.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011809173.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482428.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558039.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003080063.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020655768.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_004653444.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011287089.1
COORDINATES: similar to AA sequence:RefSeq:WP_008064257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011827944.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611958.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015765153.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_015434657.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020703385.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558108.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011301795.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611165.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011486178.1
COORDINATES: similar to AA sequence:RefSeq:WP_003049988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012357045.1
COORDINATES: similar to AA sequence:RefSeq:WP_016448852.1
COORDINATES: similar to AA sequence:RefSeq:WP_018913041.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105979.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516281.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516278.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017530732.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_019142565.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014028942.1
COORDINATES: protein motif:HMM:NF021255.2
COORDINATES: similar to AA sequence:RefSeq:WP_018990594.1
COORDINATES: similar to AA sequence:RefSeq:WP_020424851.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004348525.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF027602.2
COORDINATES: similar to AA sequence:RefSeq:WP_008905775.1
COORDINATES: protein motif:HMM:NF037735.2
COORDINATES: similar to AA sequence:RefSeq:WP_009517686.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004304966.1
COORDINATES: similar to AA sequence:RefSeq:WP_004535816.1
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005798874.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723135.1
COORDINATES: similar to AA sequence:RefSeq:WP_004265662.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611796.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011296146.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013323.2
GO:0008410 - CoA-transferase activity [Evidence IEA]