Vibrio echinoideorum strain DSM 107264 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
DOI:10.1007/s00284-021-02725-0 Publication Status: Online-Only
Submitted (05-JAN-2022) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025486.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 78x\nSequencing Technology :: Illumina MiSeq; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/29/2022 11:00:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,090\nCDSs (total) :: 4,903\nGenes (coding) :: 4,817\nCDSs (with protein) :: 4,817\nGenes (RNA) :: 187\nrRNAs :: 16, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 15, 15 (5S, 16S, 23S)\ntRNAs :: 137\nncRNAs :: 4\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 37 of 86\nPseudo Genes (incomplete) :: 47 of 86\nPseudo Genes (internal stop) :: 16 of 86\nPseudo Genes (multiple problems) :: 13 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017097181.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016768695.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061974.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017061973.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016799688.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019824695.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017097185.1
COORDINATES: similar to AA sequence:RefSeq:WP_007625081.1
COORDINATES: similar to AA sequence:RefSeq:WP_017055772.1
COORDINATES: similar to AA sequence:RefSeq:WP_017089030.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017055766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017101741.1
COORDINATES: similar to AA sequence:RefSeq:WP_017055764.1
GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity [Evidence IEA]
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012127839.1
COORDINATES: similar to AA sequence:RefSeq:WP_005427947.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005427928.1
COORDINATES: similar to AA sequence:RefSeq:WP_017094254.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017055759.1
COORDINATES: similar to AA sequence:RefSeq:WP_020977922.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154640.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011154641.1
anguibactin biosynthesis histamine N-monooxygenase AngU
COORDINATES: similar to AA sequence:RefSeq:WP_011154642.1
multifunctional 2,3-dihydroxybenzoyl-L-cysteine cyclase AngN
COORDINATES: similar to AA sequence:RefSeq:WP_009841733.1
COORDINATES: similar to AA sequence:RefSeq:WP_017094256.1
COORDINATES: similar to AA sequence:RefSeq:WP_017055792.1
COORDINATES: similar to AA sequence:RefSeq:WP_017055791.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017634316.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017055789.1
GO:0008668 - (2,3-dihydroxybenzoyl)adenylate synthase activity [Evidence IEA]
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
(2,3-dihydroxybenzoyl)adenylate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_010647510.1
COORDINATES: similar to AA sequence:RefSeq:WP_004411586.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017055787.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061977.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1