Vibrio echinoideorum strain DSM 107264 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
DOI:10.1007/s00284-021-02725-0 Publication Status: Online-Only
Submitted (05-JAN-2022) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025485.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 78x\nSequencing Technology :: Illumina MiSeq; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/29/2022 11:00:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,090\nCDSs (total) :: 4,903\nGenes (coding) :: 4,817\nCDSs (with protein) :: 4,817\nGenes (RNA) :: 187\nrRNAs :: 16, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 15, 15 (5S, 16S, 23S)\ntRNAs :: 137\nncRNAs :: 4\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 37 of 86\nPseudo Genes (incomplete) :: 47 of 86\nPseudo Genes (internal stop) :: 16 of 86\nPseudo Genes (multiple problems) :: 13 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016790711.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017085710.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_016768462.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_017087952.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_016799708.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_017098539.1
COORDINATES: similar to AA sequence:RefSeq:WP_016768232.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787104.1
COORDINATES: similar to AA sequence:RefSeq:WP_017096188.1
COORDINATES: similar to AA sequence:RefSeq:WP_017078683.1
COORDINATES: similar to AA sequence:RefSeq:WP_015702405.1
COORDINATES: similar to AA sequence:RefSeq:WP_019282236.1
COORDINATES: similar to AA sequence:RefSeq:WP_019282235.1
COORDINATES: similar to AA sequence:RefSeq:WP_017108479.1
COORDINATES: similar to AA sequence:RefSeq:WP_001349768.1
COORDINATES: similar to AA sequence:RefSeq:WP_001347873.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025043.2
COORDINATES: similar to AA sequence:RefSeq:WP_017085672.1
COORDINATES: similar to AA sequence:RefSeq:WP_016767832.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790262.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790261.1
COORDINATES: similar to AA sequence:RefSeq:WP_016791380.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_005430754.1
COORDINATES: similar to AA sequence:RefSeq:WP_005430760.1
phosphatidylinositol-specific phospholipase C
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF012242.2
COORDINATES: similar to AA sequence:RefSeq:WP_009706280.1
COORDINATES: similar to AA sequence:RefSeq:WP_016788400.1
TerB family tellurite resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_010319173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012841206.1
COORDINATES: similar to AA sequence:RefSeq:WP_005709928.1
COORDINATES: similar to AA sequence:RefSeq:WP_016767518.1
COORDINATES: similar to AA sequence:RefSeq:WP_017086314.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790683.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800123.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800122.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799343.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799662.1
COORDINATES: similar to AA sequence:RefSeq:WP_017098486.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085514.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800121.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017085512.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085511.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_016799657.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_016766871.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787116.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_009355975.1
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_017085687.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085686.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016799716.1
COORDINATES: similar to AA sequence:RefSeq:WP_016768055.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_016790719.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_016790718.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_017087946.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_016787018.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787188.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_016790715.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_016790714.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799713.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787044.1
type IV conjugative transfer system lipoprotein TraV