Escherichia albertii strain Sample 167 plasmid pESA138_1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia.
Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance
Submitted (05-MAR-2021) Institute for Communicable Disease Control and Prevention, Zigong Center for Disease Control and Prevention, 1296 Hui Chuan Lu, Ziliujing District, Zigong, Sichuan 643000, China
Nucleotide sequence updated by submitter
Submitted (25-JAN-2021) Institute for Communicable Disease Control and Prevention, Zigong Center for Disease Control and Prevention, 1296 Hui Chuan Lu, Ziliujing District, Zigong, Sichuan 643000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP070291.2.\nNCBI analysis of this genome has determined that >30% of the\npredicted CDS features contain frameshifts, which is well above the\nusually observed value of <10%.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. V.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 96x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 07:06:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,490\nCDSs (total) :: 4,366\nGenes (coding) :: 4,269\nCDSs (with protein) :: 4,269\nGenes (RNA) :: 124\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 11\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 30 of 97\nPseudo Genes (incomplete) :: 75 of 97\nPseudo Genes (internal stop) :: 20 of 97\nPseudo Genes (multiple problems) :: 25 of 97\nPseudo Genes (short protein) :: 3 of 97\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_001697773.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002433476.1
COORDINATES: similar to AA sequence:RefSeq:WP_000580770.1
COORDINATES: similar to AA sequence:RefSeq:WP_000887652.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: similar to AA sequence:RefSeq:WP_000227815.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
lipopolysaccharide N-acetylglucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016235231.1
GO:0098004 - virus tail fiber assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000631340.1
COORDINATES: similar to AA sequence:RefSeq:WP_000279189.1
COORDINATES: similar to AA sequence:RefSeq:WP_001774500.1
COORDINATES: similar to AA sequence:RefSeq:WP_001189838.1
COORDINATES: similar to AA sequence:RefSeq:WP_000047570.1
COORDINATES: similar to AA sequence:RefSeq:WP_000002798.1
COORDINATES: similar to AA sequence:RefSeq:WP_000440161.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000926344.1
COORDINATES: similar to AA sequence:RefSeq:WP_000523978.1
COORDINATES: similar to AA sequence:RefSeq:WP_000188918.1
COORDINATES: similar to AA sequence:RefSeq:WP_001220697.1
COORDINATES: similar to AA sequence:RefSeq:WP_001228780.1
COORDINATES: similar to AA sequence:RefSeq:WP_000245708.1
host cell division inhibitor Icd-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_015974252.1
phage antirepressor KilAC domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001187871.1
COORDINATES: similar to AA sequence:RefSeq:WP_002431869.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002433487.1
COORDINATES: similar to AA sequence:RefSeq:WP_000813244.1
type I toxin-antitoxin system toxin HokD
COORDINATES: similar to AA sequence:RefSeq:WP_000509944.1
COORDINATES: similar to AA sequence:RefSeq:WP_001361637.1
COORDINATES: similar to AA sequence:RefSeq:WP_016236899.1
COORDINATES: similar to AA sequence:RefSeq:WP_001774496.1
COORDINATES: similar to AA sequence:RefSeq:WP_000067705.1
COORDINATES: similar to AA sequence:RefSeq:WP_000038868.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740484.1
COORDINATES: similar to AA sequence:RefSeq:WP_016246522.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001642856.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_001281114.1
COORDINATES: similar to AA sequence:RefSeq:WP_000336812.1
COORDINATES: similar to AA sequence:RefSeq:WP_001615620.1
COORDINATES: similar to AA sequence:RefSeq:WP_000890195.1
COORDINATES: similar to AA sequence:RefSeq:WP_001177860.1
COORDINATES: similar to AA sequence:RefSeq:WP_001702258.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000660973.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_000467133.1
TerB family tellurite resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_000146942.1
COORDINATES: similar to AA sequence:RefSeq:WP_001276607.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001198668.1
COORDINATES: similar to AA sequence:RefSeq:WP_000535207.1
COORDINATES: similar to AA sequence:RefSeq:WP_000212027.1
COORDINATES: similar to AA sequence:RefSeq:WP_000602717.1
COORDINATES: similar to AA sequence:RefSeq:WP_000896792.1
COORDINATES: similar to AA sequence:RefSeq:WP_001141912.1
COORDINATES: similar to AA sequence:RefSeq:WP_001379116.1
COORDINATES: similar to AA sequence:RefSeq:WP_000840933.1
COORDINATES: similar to AA sequence:RefSeq:WP_000943615.1
COORDINATES: similar to AA sequence:RefSeq:WP_000095381.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569378.1
COORDINATES: similar to AA sequence:RefSeq:WP_001372319.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000684845.1
COORDINATES: similar to AA sequence:RefSeq:WP_001468757.1
COORDINATES: similar to AA sequence:RefSeq:WP_001468756.1
COORDINATES: similar to AA sequence:RefSeq:WP_000675642.1
COORDINATES: similar to AA sequence:RefSeq:WP_001605311.1
COORDINATES: similar to AA sequence:RefSeq:WP_001290017.1
COORDINATES: similar to AA sequence:RefSeq:WP_000738194.1
COORDINATES: similar to AA sequence:RefSeq:WP_000672519.1
COORDINATES: similar to AA sequence:RefSeq:WP_001593202.1
COORDINATES: similar to AA sequence:RefSeq:WP_000118152.1
COORDINATES: similar to AA sequence:RefSeq:WP_001289899.1
COORDINATES: similar to AA sequence:RefSeq:NP_309978.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000208030.1
COORDINATES: similar to AA sequence:RefSeq:WP_001297787.1
COORDINATES: similar to AA sequence:RefSeq:WP_001561093.1
COORDINATES: similar to AA sequence:RefSeq:WP_001434386.1
COORDINATES: similar to AA sequence:RefSeq:WP_000269003.1
COORDINATES: similar to AA sequence:RefSeq:WP_000057456.1
COORDINATES: similar to AA sequence:RefSeq:WP_001398513.1
COORDINATES: similar to AA sequence:RefSeq:WP_000561970.1
COORDINATES: similar to AA sequence:RefSeq:WP_001133669.1
COORDINATES: similar to AA sequence:RefSeq:WP_001603498.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_001216032.1
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000113019.1
COORDINATES: similar to AA sequence:RefSeq:WP_000648830.1
COORDINATES: similar to AA sequence:RefSeq:WP_001448129.1
COORDINATES: similar to AA sequence:RefSeq:WP_016246563.1
COORDINATES: similar to AA sequence:RefSeq:WP_000124153.1
COORDINATES: similar to AA sequence:RefSeq:WP_000611663.1
COORDINATES: similar to AA sequence:RefSeq:WP_000874157.1
COORDINATES: similar to AA sequence:RefSeq:WP_001697576.1
COORDINATES: similar to AA sequence:RefSeq:WP_001569361.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001749391.1
COORDINATES: similar to AA sequence:RefSeq:NP_459923.1
IS200/IS605-like element IS200C family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000848366.1
COORDINATES: similar to AA sequence:RefSeq:WP_001615576.1
COORDINATES: similar to AA sequence:RefSeq:WP_002431873.1
COORDINATES: similar to AA sequence:RefSeq:WP_000132516.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000747845.1
COORDINATES: similar to AA sequence:RefSeq:WP_015974230.1
COORDINATES: similar to AA sequence:RefSeq:WP_001558368.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001542554.1
COORDINATES: similar to AA sequence:RefSeq:WP_001031680.1
COORDINATES: similar to AA sequence:RefSeq:WP_000747724.1
PefC/AfrB family outer membrane usher protein
COORDINATES: similar to AA sequence:RefSeq:WP_000735752.1
COORDINATES: protein motif:HMM:NF015301.2
adhesin biosynthesis transcription regulatory family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016231390.1
COORDINATES: similar to AA sequence:RefSeq:WP_000132944.1
COORDINATES: similar to AA sequence:RefSeq:WP_001677489.1
COORDINATES: similar to AA sequence:RefSeq:WP_000068859.1
COORDINATES: similar to AA sequence:RefSeq:WP_000126782.1
COORDINATES: similar to AA sequence:RefSeq:WP_000610388.1
COORDINATES: similar to AA sequence:RefSeq:WP_016231394.1
COORDINATES: similar to AA sequence:RefSeq:WP_000058793.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000175487.1