Adhaeribacter swui strain KCTC 52873 plasmid unnamed2, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Adhaeribacter.
Adhaeribacter swui sp. nov., isolated from wet mud
Submitted (15-JUN-2020) Research Institute for Dok-do & Ulleung-do Island, Kyungpook National University, Kyungpook National University, 80 Daehakro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP055155.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 153.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 14:32:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,915\nCDSs (total) :: 4,860\nGenes (coding) :: 4,826\nCDSs (with protein) :: 4,826\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 10 of 34\nPseudo Genes (incomplete) :: 24 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011746020.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_017732425.1
COORDINATES: similar to AA sequence:RefSeq:WP_019942213.1
COORDINATES: similar to AA sequence:RefSeq:WP_013767865.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_009778813.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008612751.1
COORDINATES: similar to AA sequence:RefSeq:WP_018617112.1
COORDINATES: similar to AA sequence:RefSeq:WP_009792097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009284498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732256.1
COORDINATES: similar to AA sequence:RefSeq:WP_008239049.1
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: similar to AA sequence:RefSeq:WP_016193899.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007655705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018479339.1
COORDINATES: protein motif:HMM:NF024061.2
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013666687.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009185121.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018477016.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611811.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_010611982.1
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_008765224.1
COORDINATES: similar to AA sequence:RefSeq:WP_008512973.1
COORDINATES: similar to AA sequence:RefSeq:WP_003005528.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007661346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661352.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480028.1
COORDINATES: similar to AA sequence:RefSeq:WP_014021296.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_015361469.1
COORDINATES: protein motif:HMM:TIGR04131.1
gliding motility-associated C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019947546.1
COORDINATES: similar to AA sequence:RefSeq:WP_007653373.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478817.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002177305.1
His-Xaa-Ser system radical SAM maturase HxsC
COORDINATES: similar to AA sequence:RefSeq:WP_000464256.1
His-Xaa-Ser system radical SAM maturase HxsB
COORDINATES: protein motif:HMM:TIGR03976.1
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012931197.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012931198.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF018037.2
COORDINATES: similar to AA sequence:RefSeq:WP_018620655.1
COORDINATES: similar to AA sequence:RefSeq:WP_012924737.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018618966.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_008467604.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015027450.1
COORDINATES: similar to AA sequence:RefSeq:WP_018618970.1
COORDINATES: similar to AA sequence:RefSeq:WP_000186044.1
COORDINATES: similar to AA sequence:RefSeq:WP_018696580.1
COORDINATES: similar to AA sequence:RefSeq:WP_018618964.1
COORDINATES: similar to AA sequence:RefSeq:WP_009779715.1
COORDINATES: similar to AA sequence:RefSeq:WP_012926544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477714.1
COORDINATES: similar to AA sequence:RefSeq:WP_007138503.1
COORDINATES: protein motif:HMM:NF037716.2
COORDINATES: similar to AA sequence:RefSeq:WP_008242507.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019943509.1
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_019945777.1
COORDINATES: similar to AA sequence:RefSeq:WP_019945425.1
COORDINATES: similar to AA sequence:RefSeq:WP_012928283.1
COORDINATES: similar to AA sequence:RefSeq:WP_020212994.1