Adhaeribacter swui strain KCTC 52873 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Adhaeribacter.
Adhaeribacter swui sp. nov., isolated from wet mud
Submitted (15-JUN-2020) Research Institute for Dok-do & Ulleung-do Island, Kyungpook National University, Kyungpook National University, 80 Daehakro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP055154.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 153.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 14:32:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,915\nCDSs (total) :: 4,860\nGenes (coding) :: 4,826\nCDSs (with protein) :: 4,826\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 10 of 34\nPseudo Genes (incomplete) :: 24 of 34\nPseudo Genes (internal stop) :: 4 of 34\nPseudo Genes (multiple problems) :: 3 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03783.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007661346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661352.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480028.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647355.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: similar to AA sequence:RefSeq:WP_019986996.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_019989684.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010933619.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017260298.1
voltage-gated chloride channel family protein
COORDINATES: protein motif:HMM:NF014677.2
COORDINATES: similar to AA sequence:RefSeq:WP_015783660.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018344005.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002981510.1
COORDINATES: similar to AA sequence:RefSeq:WP_002981519.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF022838.2
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_002981512.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_015028711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007567572.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_006260134.1
COORDINATES: protein motif:HMM:NF025028.2
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: protein motif:HMM:NF021415.2
DUF2116 family Zn-ribbon domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016197269.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_013921735.1
COORDINATES: similar to AA sequence:RefSeq:WP_004070917.1
COORDINATES: protein motif:HMM:NF037892.2
COORDINATES: protein motif:HMM:NF017393.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_020603785.1
COORDINATES: similar to AA sequence:RefSeq:WP_019942213.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019946140.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_014686408.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871997.1
COORDINATES: similar to AA sequence:RefSeq:WP_017500180.1
COORDINATES: similar to AA sequence:RefSeq:WP_009281323.1
glutathione-dependent formaldehyde dehydrogenase
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: similar to AA sequence:RefSeq:WP_007839942.1
COORDINATES: similar to AA sequence:RefSeq:WP_010873561.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010663725.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF015629.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_016869179.1
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018615753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007625087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017734023.1
COORDINATES: similar to AA sequence:RefSeq:WP_008992796.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003002375.1
COORDINATES: similar to AA sequence:RefSeq:WP_002996045.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_017732265.1
COORDINATES: similar to AA sequence:RefSeq:WP_014773321.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00003.1
GO:0005507 - copper ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017732261.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013072037.1
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_007659572.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478212.1
COORDINATES: similar to AA sequence:RefSeq:WP_020538149.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008612768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480032.1
COORDINATES: similar to AA sequence:RefSeq:WP_020567557.1
COORDINATES: similar to AA sequence:RefSeq:WP_007660668.1
COORDINATES: similar to AA sequence:RefSeq:WP_011584897.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014678809.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011584891.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002993378.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730675.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931251.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_032489447.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012931242.1
COORDINATES: similar to AA sequence:RefSeq:WP_013454219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013185822.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949140.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF039999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732256.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018478871.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019240.2
COORDINATES: similar to AA sequence:RefSeq:WP_018477026.1
COORDINATES: similar to AA sequence:RefSeq:WP_008992789.1
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_002657193.1
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_008765224.1
COORDINATES: similar to AA sequence:RefSeq:WP_008512973.1