Enterocloster bolteae strain ATCC BAA-613 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Enterocloster.
Economical hybrid assembly and finishing of multiplexed bacterial genomes
Submitted (18-AUG-2017) Genetics, University of North Carolina at Chapel Hill, 120 Mason Farm Road 5000 D, Genetic Medicine Building Cb#7264, Chapel Hill, NC 27599, USA
Amino acid sequence updated by database at submitter request
Submitted (19-JUL-2017) Genetics, University of North Carolina at Chapel Hill, 120 Mason Farm Road 5000 D, Genetic Medicine Building Cb#7264, Chapel Hill, NC 27599, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP022465.2.\n\nOn Sep 20, 2017 this sequence version replaced NZ_CP022465.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 17-AUG-2017\nAssembly Method :: SPAdes v. 3.10.0\nAssembly Name :: c_bolteae_nanopore_peillumina\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 20x\nSequencing Technology :: Oxford Nanopore MinION, Illumina HiSeq\n 4000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 15:44:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,120\nCDSs (total) :: 6,026\nGenes (coding) :: 5,951\nCDSs (with protein) :: 5,951\nGenes (RNA) :: 94\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 75\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 22 of 75\nPseudo Genes (incomplete) :: 61 of 75\nPseudo Genes (internal stop) :: 16 of 75\nPseudo Genes (multiple problems) :: 19 of 75\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007038006.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007038007.1
COORDINATES: similar to AA sequence:RefSeq:WP_008721883.1
SpaA isopeptide-forming pilin-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_007038009.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571112.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571113.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571114.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007038012.1
COORDINATES: similar to AA sequence:RefSeq:WP_007038013.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571117.1
TcpE family conjugal transfer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_002571118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007038016.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571120.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571121.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571122.1
COORDINATES: similar to AA sequence:RefSeq:WP_007859770.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002571124.1
COORDINATES: similar to AA sequence:RefSeq:WP_013904578.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002571126.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002571127.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571128.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571129.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571130.1
COORDINATES: similar to AA sequence:RefSeq:WP_007038033.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571133.1
GO:0005576 - extracellular region [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002571134.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571136.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002571137.1
COORDINATES: similar to AA sequence:RefSeq:WP_007037998.1
COORDINATES: similar to AA sequence:RefSeq:WP_002571139.1
COORDINATES: similar to AA sequence:RefSeq:WP_016440259.1