Kosakonia cowanii strain LT-1 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia.
Kosakonia cowanii LT-1, compelete genome
Submitted (03-OCT-2022) College of Biological and Food Engineering, Changshu Institute of Technology, 99 South Third Ring Road, Suzhou, Jiangsu 215500, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP107078.1.\nBacteria and source DNA available from Minxing Building 209,\nChangshu Institute of Technology.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 17-JUN-2022\nAssembly Method :: SOAPdenovo v. 2.04; Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 10:36:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,462\nCDSs (total) :: 4,349\nGenes (coding) :: 4,298\nCDSs (with protein) :: 4,298\nGenes (RNA) :: 113\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 9\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 14 of 51\nPseudo Genes (incomplete) :: 42 of 51\nPseudo Genes (internal stop) :: 8 of 51\nPseudo Genes (multiple problems) :: 11 of 51\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:NP_052630.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_016495517.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569225.1
COORDINATES: similar to AA sequence:RefSeq:WP_001063461.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843179.1
COORDINATES: similar to AA sequence:RefSeq:WP_000493378.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016238493.1
COORDINATES: similar to AA sequence:RefSeq:WP_000545985.1
COORDINATES: similar to AA sequence:RefSeq:WP_000905949.1
COORDINATES: similar to AA sequence:RefSeq:WP_000528931.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229629.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_001356337.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008938109.1
COORDINATES: similar to AA sequence:RefSeq:WP_000741348.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019725033.1
COORDINATES: similar to AA sequence:RefSeq:WP_000124024.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008322804.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372610.1
COORDINATES: similar to AA sequence:RefSeq:WP_000902298.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012815893.1
COORDINATES: protein motif:HMM:NF025611.2
COORDINATES: similar to AA sequence:RefSeq:WP_012768166.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005361665.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019843280.1
COORDINATES: similar to AA sequence:RefSeq:WP_010464917.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF019126.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539895.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000600827.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004860761.1
COORDINATES: similar to AA sequence:RefSeq:WP_019076707.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226527.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226526.1
COORDINATES: similar to AA sequence:RefSeq:WP_010670294.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199736.1
COORDINATES: similar to AA sequence:RefSeq:WP_015964051.1
GO:0008951 - palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity [Evidence IEA]
GO:0036104 - Kdo2-lipid A biosynthetic process [Evidence IEA]; GO:0009409 - response to cold [Evidence IEA]
kdo(2)-lipid IV(A) palmitoleoyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014226774.1
COORDINATES: similar to AA sequence:RefSeq:WP_015705673.1
COORDINATES: protein motif:HMM:NF038384.1
COORDINATES: similar to AA sequence:RefSeq:WP_011233070.1
COORDINATES: similar to AA sequence:RefSeq:WP_000203924.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611476.1
COORDINATES: similar to AA sequence:RefSeq:WP_019751943.1
COORDINATES: similar to AA sequence:RefSeq:WP_019076503.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063902.1
COORDINATES: protein motif:HMM:NF018726.2
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_017459901.1
COORDINATES: similar to AA sequence:RefSeq:WP_001083583.1
addiction module toxin, GnsA/GnsB family
COORDINATES: similar to AA sequence:RefSeq:WP_013572668.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013749489.1
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
COORDINATES: similar to AA sequence:RefSeq:WP_001618777.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_007853275.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495506.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087138.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017891108.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495512.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008502211.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_004966041.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015740484.1