Rhizobium ruizarguesonis strain NZLR24 plasmid p4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Comparative genomic analysis of Rhizobium strains in Lentils
Submitted (09-MAR-2021) Department of Plant Pathology, Zhejiang University, Yuhangtang, Hangzhou, Zhejiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071682.1.\nBacteria and source DNA available from UC Davis Douglas Cook Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14\nAssembly Name :: Rhizobium_leguminosarum_GsC_NZLR24\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 06:50:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,551\nCDSs (total) :: 7,486\nGenes (coding) :: 7,264\nCDSs (with protein) :: 7,264\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 222\nCDSs (without protein) :: 222\nPseudo Genes (ambiguous residues) :: 0 of 222\nPseudo Genes (frameshifted) :: 102 of 222\nPseudo Genes (incomplete) :: 165 of 222\nPseudo Genes (internal stop) :: 29 of 222\nPseudo Genes (multiple problems) :: 67 of 222\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66-like element ISRle3 family transposase
COORDINATES: protein motif:HMM:NF020110.2
sensor histidine kinase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017996363.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017967480.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342143.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342130.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008522963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342131.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008522966.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522968.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341872.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341873.1
COORDINATES: similar to AA sequence:RefSeq:WP_004111695.1
COORDINATES: similar to AA sequence:RefSeq:WP_012557269.1
COORDINATES: similar to AA sequence:RefSeq:WP_013442119.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018045411.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017969129.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958560.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586035.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559871.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586031.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958555.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958554.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486313.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969118.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559863.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958548.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958546.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969113.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017958543.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969110.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF038091.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958540.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_020486312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559851.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958535.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969103.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_012559848.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958532.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958531.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577375.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048964.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017958527.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655074.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012559843.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594536.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017969091.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992472.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634817.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006699041.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958519.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559834.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969082.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969081.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969080.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007598408.1
COORDINATES: similar to AA sequence:RefSeq:WP_007598406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654497.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011654496.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969076.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129293.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_041936623.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element ISRle6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_020048171.1
COORDINATES: protein motif:HMM:NF025840.2
DarT ssDNA thymidine ADP-ribosyltransferase family protein
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011509561.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509562.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509563.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509564.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509565.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_018516653.1
COORDINATES: protein motif:HMM:NF025386.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611413.1
IS6-like element ISRle39A family transposase
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018067286.1
COORDINATES: protein motif:HMM:NF013088.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019342.2
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014415291.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF012699.2
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819874.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427378.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842018.1
COORDINATES: similar to AA sequence:RefSeq:WP_020648026.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009503116.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842008.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654624.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018438478.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007823557.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817899.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650068.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516659.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572688.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018116989.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655224.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008532033.1
COORDINATES: similar to AA sequence:RefSeq:WP_020052766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814656.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814659.1
COORDINATES: similar to AA sequence:RefSeq:WP_002631126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913983.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016558624.1
COORDINATES: similar to AA sequence:RefSeq:WP_006165144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342532.1
COORDINATES: protein motif:HMM:NF019813.2
COORDINATES: similar to AA sequence:RefSeq:WP_018516708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516709.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048164.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699340.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482021.1
GO:0061579 - N-acyl homoserine lactone synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482025.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_011970259.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017273085.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516723.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_018097602.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007539614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749438.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013500664.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018516728.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482039.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516731.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_011654562.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119814.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04267.2
HEXXH motif-containing putative peptide modification protein
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020397338.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_018482044.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_018516736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482047.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654735.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482051.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654887.1
COORDINATES: similar to AA sequence:RefSeq:WP_017266354.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516592.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018516746.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482057.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516748.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014330966.1
COORDINATES: similar to AA sequence:RefSeq:WP_017263624.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533454.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017267489.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242384.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017964507.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006102 - isocitrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006766312.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517032.1
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517033.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958591.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958592.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517037.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517038.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517039.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996970.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018325564.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098874.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003517369.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482079.1
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018482080.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018240254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006614184.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018517047.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018517048.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007637327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517050.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_018517051.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517052.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517053.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517054.1
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: similar to AA sequence:RefSeq:WP_018517055.1
GO:0016151 - nickel cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018240265.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_026242367.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_018517059.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517060.1
COORDINATES: similar to AA sequence:RefSeq:WP_012494720.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517062.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_011384044.1
COORDINATES: similar to AA sequence:RefSeq:WP_008386879.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_007811349.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011053360.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004675974.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
COORDINATES: similar to AA sequence:RefSeq:WP_019093066.1
COORDINATES: similar to AA sequence:RefSeq:WP_008045486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875227.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970475.1
IS21-like element ISSme2 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_020572026.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517065.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012755356.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755357.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875401.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517068.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330935.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857805.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330937.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_003549684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497390.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018329392.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654699.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068288.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969040.1
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: similar to AA sequence:RefSeq:WP_014242209.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815989.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611587.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760215.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760216.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068332.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018496488.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068334.1
asparagine synthase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048084.1
COORDINATES: protein motif:HMM:NF012967.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484262.1
COORDINATES: similar to AA sequence:RefSeq:WP_002757630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654213.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551769.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915886.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551771.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517081.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314250.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517083.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591660.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018517085.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736897.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018517089.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551781.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_018496568.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517093.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017958624.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517094.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068350.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551808.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496573.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_032488436.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875140.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517103.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018482221.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017997123.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958633.1
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875166.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551818.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_011654232.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_018517503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532765.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517505.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654236.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018484296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011665910.1
nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018517508.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018459521.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517510.1
acetyl-CoA carboxylase biotin carboxylase subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517511.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517512.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
COORDINATES: protein motif:HMM:NF019011.2
COORDINATES: similar to AA sequence:RefSeq:WP_013845822.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004128890.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845815.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329071.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517521.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326386.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517523.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016817.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013845825.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517526.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845835.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]
GO:0019478 - D-amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326366.1
COORDINATES: similar to AA sequence:RefSeq:WP_020309472.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517533.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018325646.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018517598.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_009804082.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_011440120.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517591.1
COORDINATES: protein motif:HMM:NF036686.2
COORDINATES: similar to AA sequence:RefSeq:WP_004128865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517588.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271297.1
COORDINATES: similar to AA sequence:RefSeq:WP_011975853.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095211.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517584.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517583.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517509.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170826.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
D-alanine--D-alanine ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013533457.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126138.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612137.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015886711.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067938.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551756.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018517736.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_018496049.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_018517733.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517732.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517731.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650212.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_017996963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_012330183.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018516594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
COORDINATES: similar to AA sequence:RefSeq:WP_007700356.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007700371.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611367.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245240.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517771.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00035.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068077.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485051.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485052.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654195.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567609.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007199072.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068071.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551160.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018496056.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496057.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913511.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486481.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486537.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068081.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551557.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068084.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496438.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590950.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759309.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493310.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067909.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913713.1
COORDINATES: similar to AA sequence:RefSeq:WP_012558132.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571692.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555838.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068049.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247053.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016733082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555108.1
COORDINATES: similar to AA sequence:RefSeq:WP_006145015.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018485829.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485830.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068043.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003550937.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011648905.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997307.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997306.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517405.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496455.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018446993.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068013.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068014.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485839.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901392.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068093.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735982.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068020.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496468.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496469.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068024.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550946.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760506.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592499.1
COORDINATES: similar to AA sequence:RefSeq:WP_020572162.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020710204.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448917.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493959.1
COORDINATES: protein motif:HMM:NF039485.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483799.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068235.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007627851.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068230.1
COORDINATES: similar to AA sequence:RefSeq:WP_015317681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791789.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068226.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_018483794.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012649536.1
COORDINATES: similar to AA sequence:RefSeq:WP_017133426.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018068222.1
COORDINATES: similar to AA sequence:RefSeq:WP_018243378.1
COORDINATES: similar to AA sequence:RefSeq:WP_003529621.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
GO:0018104 - peptidoglycan-protein cross-linking [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015914829.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012760101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495022.1
COORDINATES: similar to AA sequence:RefSeq:WP_011746418.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015493510.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817586.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494935.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068320.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483784.1
COORDINATES: similar to AA sequence:RefSeq:WP_017965383.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018068317.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068316.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483781.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068314.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483778.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997024.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483777.1
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495013.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_017997020.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554934.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800758.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068304.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068302.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997014.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012759949.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759950.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495020.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068297.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068296.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018483766.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397303.1
COORDINATES: similar to AA sequence:RefSeq:WP_007825992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760297.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612021.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483761.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586721.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007524290.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006310243.1
COORDINATES: similar to AA sequence:RefSeq:WP_006310239.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578839.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527974.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494937.1
COORDINATES: similar to AA sequence:RefSeq:WP_004111689.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483758.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558726.1
COORDINATES: similar to AA sequence:RefSeq:WP_020487171.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558284.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483756.1
COORDINATES: similar to AA sequence:RefSeq:WP_020572916.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_018065756.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_018517785.1
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
COORDINATES: protein motif:HMM:NF015437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012490496.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048974.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068575.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550345.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759925.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003524050.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517623.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486494.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486493.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611229.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555661.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650348.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575527.1
DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018516627.1
GO:0042834 - peptidoglycan binding [Evidence IEA]
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017996107.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516629.1
His-Xaa-Ser system radical SAM maturase HxsB
COORDINATES: similar to AA sequence:RefSeq:WP_017996105.1
His-Xaa-Ser system radical SAM maturase HxsC
COORDINATES: similar to AA sequence:RefSeq:WP_018493458.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699241.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516633.1
COORDINATES: protein motif:HMM:NF004780.0
COORDINATES: similar to AA sequence:RefSeq:WP_011971051.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528042.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011882953.1
COORDINATES: similar to AA sequence:RefSeq:WP_013224019.1
COORDINATES: protein motif:HMM:NF025808.2
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019517824.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_018901823.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017266204.1
COORDINATES: protein motif:HMM:NF014273.2
COORDINATES: similar to AA sequence:RefSeq:WP_015339323.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341874.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564415.1
COORDINATES: protein motif:HMM:NF025433.2
bifunctional DedA family/phosphatase PAP2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015343101.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771386.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_003548540.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537209.1
curli-like amyloid fiber formation chaperone CsgH
COORDINATES: similar to AA sequence:RefSeq:WP_003505758.1
COORDINATES: similar to AA sequence:RefSeq:WP_004108800.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522977.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537474.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008522943.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735239.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694601.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735237.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341517.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735234.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016735233.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694607.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735231.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898074.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448851.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694635.1