Rhizobium ruizarguesonis strain NZLR24 plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Comparative genomic analysis of Rhizobium strains in Lentils
Submitted (09-MAR-2021) Department of Plant Pathology, Zhejiang University, Yuhangtang, Hangzhou, Zhejiang 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071681.1.\nBacteria and source DNA available from UC Davis Douglas Cook Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.14\nAssembly Name :: Rhizobium_leguminosarum_GsC_NZLR24\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 06:50:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,551\nCDSs (total) :: 7,486\nGenes (coding) :: 7,264\nCDSs (with protein) :: 7,264\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 222\nCDSs (without protein) :: 222\nPseudo Genes (ambiguous residues) :: 0 of 222\nPseudo Genes (frameshifted) :: 102 of 222\nPseudo Genes (incomplete) :: 165 of 222\nPseudo Genes (internal stop) :: 29 of 222\nPseudo Genes (multiple problems) :: 67 of 222\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003538323.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018071683.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017269639.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018496360.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605832.1
COORDINATES: similar to AA sequence:RefSeq:WP_002765008.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011970475.1
IS21-like element ISSme2 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_011970474.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048121.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020048036.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516679.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330228.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003551557.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
COORDINATES: protein motif:HMM:NF026220.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007773091.1
COORDINATES: similar to AA sequence:RefSeq:WP_014342021.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737382.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737383.1
COORDINATES: protein motif:HMM:NF021465.2
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
COORDINATES: protein motif:HMM:NF016159.2
COORDINATES: similar to AA sequence:RefSeq:WP_017992622.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003548532.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012760297.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018497101.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996417.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017996416.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483346.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: protein motif:HMM:NF025226.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011524503.1
COORDINATES: similar to AA sequence:RefSeq:WP_006541104.1
COORDINATES: similar to AA sequence:RefSeq:WP_017962936.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017962935.1
COORDINATES: similar to AA sequence:RefSeq:WP_017962934.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482047.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119813.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097558.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_018494078.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018494077.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494076.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494075.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530136.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012760778.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008523062.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007634987.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047767.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047766.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007698102.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997715.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003572500.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246689.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654265.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018446123.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997708.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246696.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736945.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997705.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958302.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047758.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654268.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071749.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517726.1
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556326.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591588.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654274.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634950.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992528.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446106.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071762.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572458.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047999.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992524.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003538257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483078.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634913.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538251.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483075.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483073.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017992509.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246719.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538683.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446100.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047979.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556356.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634889.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958335.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654293.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003538670.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494012.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018071795.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958340.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246732.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_018071799.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003555614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654301.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577549.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654304.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538646.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538644.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449184.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654309.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572412.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483047.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538635.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654313.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992483.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483043.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483042.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018483041.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483040.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997672.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654320.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018493990.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003538619.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958363.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012555455.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004675898.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634817.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992472.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047944.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736874.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493982.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092549.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047940.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018071836.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018517720.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427700.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755612.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483020.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_003549623.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071842.1
GO:0016787 - hydrolase activity [Evidence IEA]
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538312.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483860.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071845.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018449151.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018493954.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047931.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538324.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538326.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246771.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018449155.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449156.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483868.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493946.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992465.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018071866.1
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_017968604.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007759522.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996850.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010967020.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493938.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595475.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018071875.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
tyrosine-protein kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018493935.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483893.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571745.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493932.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969301.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483897.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018483898.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018071883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483900.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489818.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483903.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493925.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493924.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008532368.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018493922.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957532.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012560036.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957528.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024709.2
COORDINATES: similar to AA sequence:RefSeq:WP_018246617.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818632.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_003595519.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496101.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496102.1
adenine deaminase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245190.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576622.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069293.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342994.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759987.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012759988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759989.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997248.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560110.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759993.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759995.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496119.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003571872.1
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560117.1
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957630.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008529912.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549181.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047629.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992291.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957635.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496126.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018247024.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997231.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957639.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496130.1
putative urea ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003549191.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649802.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969248.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957645.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496134.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_018069321.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047645.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760022.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydD
COORDINATES: similar to AA sequence:RefSeq:WP_003595702.1
GbsR/MarR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018448952.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735528.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448955.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637331.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760031.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560147.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571910.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069333.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484182.1
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997210.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637338.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969227.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018069339.1
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760042.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595665.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957455.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560163.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595657.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637355.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448971.1
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017992317.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571943.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549263.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823317.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246979.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209689.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887637.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549271.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484159.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576483.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496171.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448979.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018069362.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969201.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484153.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484152.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069367.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069369.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007605109.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_017969195.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957492.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595628.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549301.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_007637388.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957495.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760075.1
rRNA adenine N-6-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018484141.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997178.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246957.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496189.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484136.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489775.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649720.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957505.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969179.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549335.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760089.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018246945.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003576433.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047725.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572011.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484121.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069403.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484118.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047732.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448919.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634623.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493201.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800739.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800737.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448923.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493205.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017957564.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003576729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484110.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012760159.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855857.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549484.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571772.1
COORDINATES: similar to AA sequence:RefSeq:WP_020665211.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246672.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549488.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549495.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484100.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549499.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_018070808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760169.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484091.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549514.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020572066.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070801.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649619.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576684.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576683.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759889.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070794.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735686.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637176.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997087.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496231.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595818.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246651.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759896.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637185.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637186.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047587.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637189.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496237.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496239.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549548.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549551.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484069.1
COORDINATES: similar to AA sequence:RefSeq:WP_002711250.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637215.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070777.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549565.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011649594.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997070.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011427472.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997064.1
COORDINATES: similar to AA sequence:RefSeq:WP_017969327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549579.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070769.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486173.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_017992440.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018486159.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247080.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486155.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018486154.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017968613.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496263.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070757.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047915.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992592.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577851.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_003572337.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538570.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047910.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555541.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047908.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047907.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538561.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958149.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496276.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018449136.1
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016735961.1
GO:0015414 - ABC-type nitrate transporter activity [Evidence IEA]
GO:0015706 - nitrate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006699924.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007634571.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654375.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486132.1
COORDINATES: similar to AA sequence:RefSeq:WP_011088885.1
GO:0004328 - formamidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018855620.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011654380.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576343.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760695.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486126.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047891.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047890.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020572106.1
COORDINATES: similar to AA sequence:RefSeq:WP_003579481.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997626.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486121.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760691.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070724.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047883.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017992561.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427744.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812009.1
GO:0018467 - formaldehyde dehydrogenase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
formaldehyde dehydrogenase, glutathione-independent
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018486114.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486113.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070717.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674672.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496290.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674674.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538494.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047867.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047865.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538486.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968667.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591805.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047860.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538478.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538476.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572268.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047854.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486094.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046316 - gluconokinase activity [Evidence IEA]
GO:0046177 - D-gluconate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003577779.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007634472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958202.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246846.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070691.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047845.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968684.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968685.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538447.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517713.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654430.1
two-component system response regulator MctR
COORDINATES: similar to AA sequence:RefSeq:WP_011654431.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591847.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017968692.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670794.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654435.1
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018070680.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555482.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246862.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760657.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572243.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003555477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530030.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538436.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538433.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997593.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577731.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737019.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538424.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449072.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760647.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017992544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449069.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_018449068.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003519616.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449065.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237067.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795717.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007700376.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958235.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555604.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_003555460.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577717.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449058.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654452.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246884.1
nitrogen assimilation transcriptional regulator NAC
COORDINATES: similar to AA sequence:RefSeq:WP_003572205.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003591879.1
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047819.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654457.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555448.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246890.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003555446.1
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018070657.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070655.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070654.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070653.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343707.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018246892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555617.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070648.1
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486055.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736987.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555441.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538368.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572169.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538358.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555167.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760628.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654469.1
aldo/keto reductase family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018449039.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018496342.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018070634.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_003572153.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572152.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017968822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634351.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555203.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070628.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018486040.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496349.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449035.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654479.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018070622.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003538341.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634325.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047783.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736962.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047778.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018246921.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654491.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053360.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071679.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071681.1