Bermanella marisrubri strain RED65 plasmid pBma45, complete sequence.
type: Entry
definition: Bermanella marisrubri strain RED65 plasmid pBma45, complete sequence.
sequence version: NZ_CP051184.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP051184.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14559901
keyword: RefSeq
source: Bermanella marisrubri
organism: Bermanella marisrubri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Bermanella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP051184.1.\nBacteria and source DNA available from J. Pinhassi J Craig Venter\nInstitute, 9704 Medical Center Drive, Rockville, MD 20850 USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2013\nAssembly Method :: HGAP v. 2.1.1\nAssembly Name :: Osp65_HGAP3_4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 132.93x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,304\nCDSs (total) :: 3,243\nGenes (coding) :: 3,235\nCDSs (with protein) :: 3,235\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 1 of 8\nPseudo Genes (incomplete) :: 7 of 8\nPseudo Genes (internal stop) :: 2 of 8\nPseudo Genes (multiple problems) :: 2 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 44397
topology: circular
so has quality: SO_0000988
location: 1..44397
location: region:1-44397:1
RO_0002162: 207949

NZ_CP051184
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14559901
type: BioSample
SIO_000068: biosample

1
title: Genome-Wide Identification of 5-Methylcytosine Sites in Bacterial Genomes By High-Throughput Sequencing of MspJI Restriction Fragments
author: Wu, V.
journal: Unpublished

2
title: Direct Submission
author: Fomenkov, A.
author: Anton, B.P.
author: Roberts, R.J.
journal: Submitted (08-APR-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44397:1
position: 44397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-44397:1:source
so part of: sequence
organism: Bermanella marisrubri
mol type: genomic DNA
strain: RED65
isolation source: Peter Dedon MIT
type material: type strain of Bermanella marisrubri
plasmid: pBma45

207949
type: Taxonomy
SIO_000068: taxonomy

HF888_RS16275
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16275
old locus tag: HF888_16275
so part of: sequence
location: complement(973..3066)
location: region:973-3066:-1
so has part: feature:973-3066:-1:exon
subclass of: SO_0000010

position:973:-1
position: 973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3066:-1
position: 3066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:973-3066:-1:exon

HF888_RS16275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16275
old locus tag: HF888_16275
EC number: 5.6.2.-
inference: COORDINATES: protein motif:HMM:NF013311.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA topoisomerase
translation: MKLYIAEKPALANAIAKAIGIQSKCDGYYKCNNNTVVAYTAGHALELAPPDFYDEGLKQWCIADLPIVPQRFKRVVSRDKKKLYSTIKKLADKATLIVNAGDPDPEGSYIVDSLIENIGYKGPIGRVLINDLNVEAAKRGLAKESATNTTINESVSAKVRSESDWVYGLNMTRLYTCKNEIAGGEKRVLSIGRVQTSLLSIIVNRENEIKNFNPHDFYELVAEAQGIAFKCDTSEMKVSFKDPQGRVINKIEFQKFIETKPKNGTIVKKEEKERRTAPPLPYDLSNLQKECYERLKLTSSETLEIAQSLYIKHNLITYPRTDCRYVDEDCYKTSNVRISNLEQFLNITITDKIVDNYKSPAFNEQETTAHIAIIPTEKSPSDSKLNDKEKAVYKIVGERFLAQFLGPSVAAETMLTMKIDGLCYPFIAKGTVKKEIGHEWLTGIKKDKLLPDLEEGHHIPLEGVHIKTKKTSPPSYFDEKSIIDAMENAAKFIDDTEIKKLLKEAQGLGTPATQSKMVDTLEKRKYINRGKQIRPTEAGMTLFNSLAPEMQRIDMTAIWEGMLKQVRKGQLSGSAVLNSVVTHTRNLIDRSHEFQIKIGDRGPIHNCPKCDSELKRIKGQDGYFWGCSGFKSGCKYTAQDKEGKPSEKKIELSTCKLCDQTIERKYSKTKDFHFWMHQEENHECTKFIKDEKGNPVF
SIO_010081: HF888_RS16275
subclass of: SO_0000673
so part of: HF888_RS16275
location: complement(973..3066)
location: region:973-3066:-1
so has part: feature:973-3066:-1:exon

WP_168367088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:973-3066:-1:exon

HF888_RS16280
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16280
old locus tag: HF888_16280
so part of: sequence
location: 3195..3503
location: region:3195-3503:1
so has part: feature:3195-3503:1:exon
subclass of: SO_0000010

position:3195:1
position: 3195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3503:1
position: 3503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3195-3503:1:exon

HF888_RS16280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16280
old locus tag: HF888_16280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFVFDAQSFKNFGLKLVVEDYGYKKELVVLSQGGSQSLSRLFESDDGFFRFSIGSQKFAIGKKDVILLVEKSEVRYYRQSSLVRLNNDRPTQVASVMKAHS
SIO_010081: HF888_RS16280
subclass of: SO_0000673
so part of: HF888_RS16280
location: 3195..3503
location: region:3195-3503:1
so has part: feature:3195-3503:1:exon

WP_168367089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3195-3503:1:exon

HF888_RS16285
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16285
old locus tag: HF888_16285
so part of: sequence
location: 3675..4562
location: region:3675-4562:1
so has part: feature:3675-4562:1:exon
subclass of: SO_0000010

position:3675:1
position: 3675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4562:1
position: 4562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3675-4562:1:exon

HF888_RS16285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16285
old locus tag: HF888_16285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MAKKIEKTQLEMPLEELLLRDISKDPEYPTLFASLPIFLPTMHRKKYDTKDWDDNSEFTYKTPFGSVSRFGPGLNIFDEDTLIGLMHIARDKKLDGHPTKMPAQLTGDGSVVVHVGETSALELNRFLRRGVSEPELEATRASVSRLSKTTLQIYSSTTDVEGDTKFFDYVGQRNVKGKFLVQFRPEVVKLFEQYVVLDFDLRTALSDTGKAVHRFLCSINKNRFSIKLDDLATAISYSGRKTDFKNTLFGTKTKPSQLEMMQKKGFIVDYELQGTGRKIPYSLSVTLNRSAELPS
SIO_010081: HF888_RS16285
subclass of: SO_0000673
so part of: HF888_RS16285
location: 3675..4562
location: region:3675-4562:1
so has part: feature:3675-4562:1:exon

WP_168367090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3675-4562:1:exon

HF888_RS16290
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16290
old locus tag: HF888_16290
so part of: sequence
location: 4709..5911
location: region:4709-5911:1
so has part: feature:4709-5911:1:exon
subclass of: SO_0000010

position:4709:1
position: 4709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5911:1
position: 5911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4709-5911:1:exon

HF888_RS16290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16290
old locus tag: HF888_16290
inference: COORDINATES: protein motif:HMM:NF015076.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MEALLQNYKNDSALSRIEEFLPYKPFCSDNKTAALIRVAYSALRYDYIQVNPPEMLAWMVFDLDNHPTTGKEADPFIWQWEGLPPPNLIVTNLDNSKSHLYYAVAPVCRSKKARIKPQQYFKAVRKKLGARLGADPDFTSPVSKNPFSKNFRTLEIHNDEYSLCELDVALDEPKANAFYELPGAATEVSIGRNTTVFNWLRYWAYEAVDEARKHDFDTWTRRCHVQARRFAIKASDALGKECLKDSEIKAIAKSVSGWVWNNYNGDNIDRGIMGLNDSGLDLKKKQSLAAHRTNSMSRERNKKAVKRVILALKRAGFSNSEITRSRVAKIVGLGRKALYTTYKAVFDRYIAFPSKKASESTRKLAGALFELRTPLDLTAISVIARKIHTSATWGLDPPPD
SIO_010081: HF888_RS16290
subclass of: SO_0000673
so part of: HF888_RS16290
location: 4709..5911
location: region:4709-5911:1
so has part: feature:4709-5911:1:exon

WP_007019384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4709-5911:1:exon

HF888_RS16295
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16295
old locus tag: HF888_16295
so part of: sequence
location: complement(6500..8515)
location: region:6500-8515:-1
so has part: feature:6500-8515:-1:exon
subclass of: SO_0000010

position:6500:-1
position: 6500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8515:-1
position: 8515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6500-8515:-1:exon

HF888_RS16295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16295
old locus tag: HF888_16295
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system DNA-binding domain-containing protein
translation: MSDLDRRYIEWIQSIASDMAELTNPYWFYVLTISLFLAALFSMSPLNTKADSKFSEHILVKERKLIILTWFLLFCYPLLNMWLYAASNNDYSIEGITPFLTFYLELTKQQWPLPIMGLISGLLINFMYQRYMVSLISKFKRALRFKQSNDELSDIRNEKKRFKAKDFLPSKHYDKNGIVVGLDENNKPLYIDNDTWYETNMQVVGPTRYGKGVILGGLIDQAIRRNDTVFYIDPKEDKFLPYIMYNACKEMGRKFVYVSLKDGEIGSYSPFTGGNEFDARDRIITAFDLALTGHPGTDFYKTQEQEEIDKYFSETKTIKGLASKINPDAASKLKAQLESWKRHESLCPKSGKGFSVEQALLDNAVVYIRGSLTSDILKKATKTLIIEVIQESMRLQKERQAHLSFFIDEVRFLASKQLADAMATAIGFRVNMVLAYQSILDTMTPDDQTLNGKSLTQSINVNSQVKAIYGGADTETAEWGASLSGERLKTITRLEKTEIKSGGGESWEPSRMLGSQAEHLIPANVFLSMPPRVCALYRPMHQAQICFTSFVPVKETDSLDTYIASKQPKKQYDQVKDKSPRDLKDTNAPTENNQKEKEKDSETKMNNLASVLPAPQKAEKGKRKQRRSKQKEKKQADRNIIGHEDLETGFEIDEQQITDFMSESYVDELDN
SIO_010081: HF888_RS16295
subclass of: SO_0000673
so part of: HF888_RS16295
location: complement(6500..8515)
location: region:6500-8515:-1
so has part: feature:6500-8515:-1:exon

WP_007019386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6500-8515:-1:exon

HF888_RS16300
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16300
old locus tag: HF888_16300
so part of: sequence
location: 9563..10327
location: region:9563-10327:1
so has part: feature:9563-10327:1:exon
subclass of: SO_0000010

position:9563:1
position: 9563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10327:1
position: 10327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9563-10327:1:exon

HF888_RS16300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16300
old locus tag: HF888_16300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVHKRDADLKYPLAIKEEKTKLVLSWLLEFRFSTFEVLAGRLGQPVANANRFFNSLLDDGFIRTFKNSMVPNTRFVMLTSKGGERLSILLGEEVRPYTRLSTFAKSTKIAHDLSVQFMVLRWIDDVDEVVWDHNIAGVHELPSYSRPDALMKSTKGFWWALELERTRKSESRVFFSLYNHVLNIRNGCYVGVRYVFNSHAVCDFYRKVFEQDAWPLFDRDGRSGRLKRTSGFFKPSNVKNIDKIFDFKVGEFW
SIO_010081: HF888_RS16300
subclass of: SO_0000673
so part of: HF888_RS16300
location: 9563..10327
location: region:9563-10327:1
so has part: feature:9563-10327:1:exon

WP_007019388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9563-10327:1:exon

HF888_RS16305
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16305
old locus tag: HF888_16305
so part of: sequence
location: 10623..11057
location: region:10623-11057:1
so has part: feature:10623-11057:1:exon
subclass of: SO_0000010

position:10623:1
position: 10623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11057:1
position: 11057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10623-11057:1:exon

HF888_RS16305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16305
old locus tag: HF888_16305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019281325.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MHKSLFLSLFFCLFSLEAQSFDACFDDAGRRFEIDPNLLRAIAHVESSMNPTAINDRGSERDIGLMQINSWWLPHLKRFGIAEKDLFHACTNIEVGSWILSENIKRHGARWDSVGVYNVGTGRGLESLKRDYVNRVYEFYSRLQ
SIO_010081: HF888_RS16305
subclass of: SO_0000673
so part of: HF888_RS16305
location: 10623..11057
location: region:10623-11057:1
so has part: feature:10623-11057:1:exon

WP_007019389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10623-11057:1:exon

HF888_RS16310
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16310
old locus tag: HF888_16310
so part of: sequence
location: 11236..11616
location: region:11236-11616:1
so has part: feature:11236-11616:1:exon
subclass of: SO_0000010

position:11236:1
position: 11236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11616:1
position: 11616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11236-11616:1:exon

HF888_RS16310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16310
old locus tag: HF888_16310
inference: COORDINATES: protein motif:HMM:NF012894.2
GO function: GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OmpA family protein
translation: MQEGQSLLAANDDESPKQTFLSAVQFDFDSSELTGKARMKLLAKMADLQKQGVSSVSVFGFTDNVGAEAYNKNLAKDRASTVARFLANGGVQINEVVGKPLCCYLVDNESDQNRHVNRRAEIHLGN
SIO_010081: HF888_RS16310
subclass of: SO_0000673
so part of: HF888_RS16310
location: 11236..11616
location: region:11236-11616:1
so has part: feature:11236-11616:1:exon

WP_165837050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11236-11616:1:exon

HF888_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16315
old locus tag: HF888_16315
so part of: sequence
location: 11632..11919
location: region:11632-11919:1
so has part: feature:11632-11919:1:exon
subclass of: SO_0000010

position:11632:1
position: 11632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11919:1
position: 11919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11632-11919:1:exon

HF888_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16315
old locus tag: HF888_16315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018694127.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRSVGFVIFFALSFLALSASASTTGQEFQAFYDWVFGAATGFLGRGIAITAGIIGLAIGAGMGKAIPALMGVLLAIIGSIGPTIINSLFGSALI
SIO_010081: HF888_RS16315
subclass of: SO_0000673
so part of: HF888_RS16315
location: 11632..11919
location: region:11632-11919:1
so has part: feature:11632-11919:1:exon

WP_007019391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11632-11919:1:exon

HF888_RS16320
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
gene: traL
locus tag: HF888_RS16320
old locus tag: HF888_16320
so part of: sequence
location: 11972..12259
location: region:11972-12259:1
so has part: feature:11972-12259:1:exon
subclass of: SO_0000010

position:11972:1
position: 11972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12259:1
position: 12259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11972-12259:1:exon

HF888_RS16320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
gene: traL
locus tag: HF888_RS16320
old locus tag: HF888_16320
inference: COORDINATES: protein motif:HMM:NF018836.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system protein TraL
translation: MAVSENYWIPRTLEDPPLFFVWEMDTAVVFLTSMIIFLLFSSPIIGFFVSLWLSKSYARVKEQGGVSLFGSFLYWYLPVDLSKRYPSFIREYVGH
SIO_010081: HF888_RS16320
subclass of: SO_0000673
so part of: HF888_RS16320
location: 11972..12259
location: region:11972-12259:1
so has part: feature:11972-12259:1:exon

WP_007019392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11972-12259:1:exon

HF888_RS16325
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
gene: traE
locus tag: HF888_RS16325
old locus tag: HF888_16325
so part of: sequence
location: 12262..12846
location: region:12262-12846:1
so has part: feature:12262-12846:1:exon
subclass of: SO_0000010

position:12262:1
position: 12262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12846:1
position: 12846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12262-12846:1:exon

HF888_RS16325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
gene: traE
locus tag: HF888_RS16325
old locus tag: HF888_16325
inference: COORDINATES: protein motif:HMM:NF017152.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system protein TraE
translation: MNRDVYKSVIAQMNVSRLFWASLSSLLIVSNVLLAYFVVTADTSEKTTLVPIGFESEFWVHNEEVDPEYLEQMSLFFLDLYTDYHPSNVESRFKMILKYVEPSAHGLLERRFDSEAQRIRNSSLSSTFHPSAIKIRETTVFVHGILQGLVAGKATDPDLDAVFRIDFEHDHGRLFIKTIERVIETQSGEYLAYE
SIO_010081: HF888_RS16325
subclass of: SO_0000673
so part of: HF888_RS16325
location: 12262..12846
location: region:12262-12846:1
so has part: feature:12262-12846:1:exon

WP_007019393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12262-12846:1:exon

HF888_RS16330
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16330
old locus tag: HF888_16330
so part of: sequence
location: 12839..13543
location: region:12839-13543:1
so has part: feature:12839-13543:1:exon
subclass of: SO_0000010

position:12839:1
position: 12839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13543:1
position: 13543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12839-13543:1:exon

HF888_RS16330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16330
old locus tag: HF888_16330
inference: COORDINATES: protein motif:HMM:NF018311.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type-F conjugative transfer system secretin TraK
translation: MNNIVVFLLVALISSTAFSIQTYSVSDGDSIQIKVSSKDLTRIRMDSGRLDGAWGLDENFTHKADRSKGEIFVRPKPGAPTTSSFFIKDGNGSVYSVTAVQHAIPSDTVVLKSLDYTAKRDSSQSSRKASSDVKRIKRLVKAMARGEGLSGYSRSSKKAEVELWKNIEIVQVDSYVGRDFEGEVYAIRNSDEKDHVFHESEFRNFGEHVRFAGLDKLKIVPNETTTLYVVREAK
SIO_010081: HF888_RS16330
subclass of: SO_0000673
so part of: HF888_RS16330
location: 12839..13543
location: region:12839-13543:1
so has part: feature:12839-13543:1:exon

WP_168367091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12839-13543:1:exon

HF888_RS16335
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16335
old locus tag: HF888_16335
so part of: sequence
location: 13543..14790
location: region:13543-14790:1
so has part: feature:13543-14790:1:exon
subclass of: SO_0000010

position:14790:1
position: 14790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13543-14790:1:exon

HF888_RS16335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16335
old locus tag: HF888_16335
inference: COORDINATES: protein motif:HMM:NF015688.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraB/VirB10 family protein
translation: MSEQEFNESNDSIDTNEDSRKKQIRNFSLVGIGLFLMVLLGLYYSDNQIKKDRQSLSAEIEEQRKKDNEILKRYKFNPSEVVKPEEKWMAKSETEFKVLKEENDSLKERLQRLEEMMEKGPDTSNNTDESVIANTQQSTPVENDQPKVKLSSPLSVESVKASVADGVAEPSIKNKKSTEIGYVDLSPMGSSNQKDKVKKNIETYMPAGAFAKVLVLSGVDAPTGGMAESNPLPVILKVLDSAILPNFFDSDIRNCHVVGAATGDLAAERVMIRTEVLSCVLANGDIIEVPIKGYIAGEDGKNGFRGRVVSKQGAVLAKSLFAGVASGLSNSINSQYQQIQTSALGTVTSIDPDKVAESGAAQGATTTLEKIADFYFKRANEIYPIIEMAPNRIGELVIIKGAKLENALVQDDGNE
SIO_010081: HF888_RS16335
subclass of: SO_0000673
so part of: HF888_RS16335
location: 13543..14790
location: region:13543-14790:1
so has part: feature:13543-14790:1:exon

WP_007019346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13543-14790:1:exon

HF888_RS16340
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16340
old locus tag: HF888_16340
so part of: sequence
location: 14783..15178
location: region:14783-15178:1
so has part: feature:14783-15178:1:exon
subclass of: SO_0000010

position:14783:1
position: 14783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15178:1
position: 15178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14783-15178:1:exon

HF888_RS16340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16340
old locus tag: HF888_16340
inference: COORDINATES: protein motif:HMM:NF021212.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraV family lipoprotein
translation: MNRFLIVFFLIAAVGCSDKYSCNGYPDMPCASISGVYDRTKDGVRDYRSASNYDEEGNWISEEDKPSVSPNNITVSDTYNALNYVSVGDPILSEPRILRGLLFPWEDSEKDLQAGGYIYLRVEEPKWIMVE
SIO_010081: HF888_RS16340
subclass of: SO_0000673
so part of: HF888_RS16340
location: 14783..15178
location: region:14783-15178:1
so has part: feature:14783-15178:1:exon

WP_040298375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14783-15178:1:exon

HF888_RS16345
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
gene: traC
locus tag: HF888_RS16345
old locus tag: HF888_16345
so part of: sequence
location: 15179..17728
location: region:15179-17728:1
so has part: feature:15179-17728:1:exon
subclass of: SO_0000010

position:15179:1
position: 15179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17728:1
position: 17728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15179-17728:1:exon

HF888_RS16345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
gene: traC
locus tag: HF888_RS16345
old locus tag: HF888_16345
inference: COORDINATES: protein motif:HMM:TIGR02746.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein TraC
translation: MIELLEGLNYRFKQFLTKALTVNPPGYAYAAGHEIPTIQQQKAFMNRYNLSSLFPWESYDETRGIFFNEDSVGFCLEASPSTGLSEADFKTLEGVISRKHEADSTIQFTIVADSNVDGIYKSWERSRTRNFDDPAYEIFQTLSENRRKYLLQGKWKSLFSGMPYVVRNFRLIISFTIPKPRGGNISQTTVDALSSKRESIIASLKGAKVHSKLVHPQDLINLVSALLHPTDDGYKPVNYDENSLIKDQIVSSETAFLPGRDGSSIIYRDKKVSVLPWSVRQYPQYWKGSNSDELIGSFLDNVRQIPCPFITTMSINFPDRVDEGGKIKQKTMRATQMADSAVSKFVPQWKKRASDWRYIEEKFQNGSSLVKTLYQVVLFAPQGEEESCEQALQDLYESYGWNLQKDRFIPVHGFLSALPMIFGREFVDDTNRLRRYRRMLTWNAINVSPLFGEWQGDGNNSLLMHGRRGQVMTIDPYQNKAGNFNIACSASSGAGKSFFTHEMIFSVLGEGGKVIVFDSGRSYEETVTLLGGQYLDFGDKTRTICLNPFTNIPLDEGGLKDHLPLLKILISNMASPSEDIPQIMKSALEQAIAKAFAKFRNKCSVTRVIEELLEMNSDESIELSKMLYPYSRDGVYGEYFEGDANIDLQDRFVVLELDDLAKKPGLQEIVLLILMMNINEVFYHSDRSQKKLCIIDEAWRLLQGRAGDFIEEGYRVARKYGGAFMTVTQRIADYYTSPVAQAAYANADHTWLLRQKTDELRSSIERGEIDGSKGKFEVFNSLKTEQGKYSEIAFMSPAGLGVGRLIVDPVTEKLYSTKAEEVQFLRNKRKEGVDLMTALTELAGKNNSR
SIO_010081: HF888_RS16345
subclass of: SO_0000673
so part of: HF888_RS16345
location: 15179..17728
location: region:15179-17728:1
so has part: feature:15179-17728:1:exon

WP_007019348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15179-17728:1:exon

HF888_RS16350
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16350
old locus tag: HF888_16350
so part of: sequence
location: 17785..18123
location: region:17785-18123:1
so has part: feature:17785-18123:1:exon
subclass of: SO_0000010

position:17785:1
position: 17785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18123:1
position: 18123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17785-18123:1:exon

HF888_RS16350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16350
old locus tag: HF888_16350
inference: COORDINATES: protein motif:HMM:NF021213.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI F-type domain-containing protein
translation: MNIRNLVFTLGISVLVSLASSFLVVKLMVPEIKSVSLDKLLDNHIAQVKTKYEMTDEEVNTYSEAFSLQVEKTLDAYGEGDTIIIVSPAVVRGTTDITDDVYASILENIESK
SIO_010081: HF888_RS16350
subclass of: SO_0000673
so part of: HF888_RS16350
location: 17785..18123
location: region:17785-18123:1
so has part: feature:17785-18123:1:exon

WP_007019349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17785-18123:1:exon

HF888_RS16355
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16355
old locus tag: HF888_16355
so part of: sequence
location: 18089..18613
location: region:18089-18613:1
so has part: feature:18089-18613:1:exon
subclass of: SO_0000010

position:18089:1
position: 18089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18613:1
position: 18613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18089-18613:1:exon

HF888_RS16355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16355
old locus tag: HF888_16355
inference: COORDINATES: protein motif:HMM:NF021981.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S26 family signal peptidase
translation: MLQFWKTSRASKKKKILKYSLIAFFVIVFFSYAFKYISEDIFGVRLAFNISDSLPGYIYLVDIGEMPSKGDVALFSPPKNPYFPEQLNFMKIVKGISGDRVSVQNHKVLINGEEVGIVKQLSKSGKQLFPISPTSIPDGYFFMWTPHKDSYDSRYKSIGLINESDFVGTARRIY
SIO_010081: HF888_RS16355
subclass of: SO_0000673
so part of: HF888_RS16355
location: 18089..18613
location: region:18089-18613:1
so has part: feature:18089-18613:1:exon

WP_007019350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18089-18613:1:exon

HF888_RS16360
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16360
old locus tag: HF888_16360
so part of: sequence
location: 18573..19190
location: region:18573-19190:1
so has part: feature:18573-19190:1:exon
subclass of: SO_0000010

position:18573:1
position: 18573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19190:1
position: 19190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18573-19190:1:exon

HF888_RS16360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16360
old locus tag: HF888_16360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVILSVLLAVFTSFVLGDELNLGALGKSYPVIERSPLDEILNNAKNLVENGGWKEIQEKKKEAVKSFLERPPGIKLPTTDEYRRREWDATYIVKNDIYTAEGVLIAKSGQKINPLDFKRMTKQYCFFNMDDKMQRAWIEQNCANPIKSKAIGVFGSVKDFAESTKLRVFFDQYGKLVDRFDIRHVPAIVRQIGNKIYVEEYPIN
SIO_010081: HF888_RS16360
subclass of: SO_0000673
so part of: HF888_RS16360
location: 18573..19190
location: region:18573-19190:1
so has part: feature:18573-19190:1:exon

WP_007019351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18573-19190:1:exon

HF888_RS16365
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
gene: traU
locus tag: HF888_RS16365
old locus tag: HF888_16365
so part of: sequence
location: 19165..20169
location: region:19165-20169:1
so has part: feature:19165-20169:1:exon
subclass of: SO_0000010

position:19165:1
position: 19165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20169:1
position: 20169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19165-20169:1:exon

HF888_RS16365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
gene: traU
locus tag: HF888_RS16365
old locus tag: HF888_16365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000794400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer pilus assembly protein TraU
translation: MLKNILLISVFTIVGLFSSSAFSVVCPGKFPNPVTDICWKCMFPIFIGPAGVTNGEVPTGEVPPPVCTCPAPPPVFIRFGVGISFWEPARMAEVVRSPMCSPSLGGTKLGEFSLNATQGSNSKGSTDVDDNMAFYHVHWFTYPLLSWVGSAITQGACMSTETLDLTAMSELDPTWSDDELTFFLNPEAVLFANPISIAACAADAVSASVSNFGLDPLFWCSGSAGPVYPLTGQISGNFSAVDSSALEVHRFAYKLHRAGLAMDTSTYAAMCMPIPQPIIRKRQYKQNMVYPVPNPAWGTGFGQTSTIWGVGKEFPYRGEDYAYLIWRKRMCCAF
SIO_010081: HF888_RS16365
subclass of: SO_0000673
so part of: HF888_RS16365
location: 19165..20169
location: region:19165-20169:1
so has part: feature:19165-20169:1:exon

WP_007019352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19165-20169:1:exon

HF888_RS16370
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16370
old locus tag: HF888_16370
so part of: sequence
location: 20154..20879
location: region:20154-20879:1
so has part: feature:20154-20879:1:exon
subclass of: SO_0000010

position:20154:1
position: 20154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20879:1
position: 20879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20154-20879:1:exon

HF888_RS16370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16370
old locus tag: HF888_16370
inference: COORDINATES: protein motif:HMM:NF021209.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC family F-type conjugative pilus assembly protein
translation: MLRFLVIFLLFSLTFIATAYEEPTDSEIAKSKEMTQNALKHERNTEIYREEIQRANQFFSKYENHANKETLGQAIESNGFITNHYNELMDDHFNSDTQAEAKDARAIETNILIFVSFSMDVSDIFSLAKDAHDIGGHVVLNGFKKDLETTLKIISEMNTRADKPLPFLIDPTLFDRFSVQSVPHYVLPLESVMPCLEKNVCHKPRSIEASGLVPIKYFLELAERNENSDVVEGLDEWIKLL
SIO_010081: HF888_RS16370
subclass of: SO_0000673
so part of: HF888_RS16370
location: 20154..20879
location: region:20154-20879:1
so has part: feature:20154-20879:1:exon

WP_165837051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20154-20879:1:exon

HF888_RS16375
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
gene: traN
locus tag: HF888_RS16375
old locus tag: HF888_16375
so part of: sequence
location: 20861..22783
location: region:20861-22783:1
so has part: feature:20861-22783:1:exon
subclass of: SO_0000010

position:20861:1
position: 20861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22783:1
position: 22783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20861-22783:1:exon

HF888_RS16375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
gene: traN
locus tag: HF888_RS16375
old locus tag: HF888_16375
inference: COORDINATES: protein motif:HMM:NF018666.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraN
translation: MDKASLILVLCLSFSLCHAEDYTDSGKAFAESIKGNQSNLSVDNAVNYQGTDVPGKQYHDDPSLSNMENAAHAESSTNEISTFVDDASSTRPPIVFDMQNDPLFKRVEEVEDKAHSLTDTYSGCVELPVGQEDVTDVIPDTCLEYGDHDVIEYTCRKNAIVTCSNKDAGKPMPIDLNFFNTSGDSGFSERKLSTYVYRFGNSGNNNRDPSGSCEWYYNYVNFYVADKEQIHSIRLKGGAYDDWVFVKFNGNNIFSAIGDSVYNDDISGSYKCERGFFGIPTNKIQPMKPHVRDGWNRIYVRNQVTGTGQVRLDIEIRVLEPCGFDTDYQTTCPSGEYAHQGELVSSQCVEGAGTRYIGVFPYYRYCWAWDQTYTRNSDPNYTREEKCDLLLQQGCVTDSSTCTEFDQALGYCKIREHQFRCFNTHSAETVTMCGDTLICSGGDCGAEYQQYEEATDDFKKATATFEAAKAVGKSYSEDLNIFKGKAYSCEKDNMYDTKDCCKDSGWATGIFTSCSTDEKQLGIAREDGRAFQTHYWEWRRKVLGETVEKWSYRSFCVYPNKLGRIIMEQAYQQIGHIVEGKKTPDCRGLTEEELETLDFESIDLSEFYEDVMNNKDSASMPAVDALKRRLESQIQSMEGS
SIO_010081: HF888_RS16375
subclass of: SO_0000673
so part of: HF888_RS16375
location: 20861..22783
location: region:20861-22783:1
so has part: feature:20861-22783:1:exon

WP_040298360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20861-22783:1:exon

HF888_RS16380
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16380
old locus tag: HF888_16380
so part of: sequence
location: 22785..23558
location: region:22785-23558:1
so has part: feature:22785-23558:1:exon
subclass of: SO_0000010

position:22785:1
position: 22785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23558:1
position: 23558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22785-23558:1:exon

HF888_RS16380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16380
old locus tag: HF888_16380
inference: COORDINATES: protein motif:HMM:NF025105.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraF
translation: MKFILTTFAFCLSLSLSANTYFDKEEQGYWWYEPVPIEVEKDEKKKEPVPERPRIDPKQEVDPREIIAQQKEYLDYLMNKAVVYPTEKNITAFMKYNEEIQSQAQRFADTGMNLKWTNPDLNYALKKPVFKEAILAKNEQKLLETKDQLANLSQEFGLVYFMRSDCPYCKRYSPVLKQFAEKHGFSIYVVSLDGKGTEEFPYPKKTFHLAETLKVEVVPALFMARPRDRKVVPLHYGVVSETQLVGRILETAEGLGD
SIO_010081: HF888_RS16380
subclass of: SO_0000673
so part of: HF888_RS16380
location: 22785..23558
location: region:22785-23558:1
so has part: feature:22785-23558:1:exon

WP_007019355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22785-23558:1:exon

HF888_RS16385
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16385
old locus tag: HF888_16385
so part of: sequence
location: 23560..24987
location: region:23560-24987:1
so has part: feature:23560-24987:1:exon
subclass of: SO_0000010

position:23560:1
position: 23560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24987:1
position: 24987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23560-24987:1:exon

HF888_RS16385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16385
old locus tag: HF888_16385
inference: COORDINATES: protein motif:HMM:NF017892.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraH
translation: MKKLLILASLSIFSYFTWGADIGDEVESMFDGAYSNTTEPGVYKTQGASYVTFGGYSERNPITKKNINLVNINPPKVTAGCGGIDLQAGGFSMIDGDEFVDNLRNIGQNAKSLFFMLGLQLVTPTINDVMNKVNKFQKDYLQFNLDSCEAATQLVGGAMEYAGAEGGECIVRRMQQSGDDYAEAKKHCTTGMGRRNTMETGGENTVTFSKGNLIWWHLMQDDFFKNNLDYSLLVMNLLGTIIVKYDDNSADSGKEVIRISRAATEAGLTTDGRNIINALLSGTEGPAANLQLKTCTDMNNTKDACINYNGSNDVTIDWKGMTTYVQDTIADINTAISNNGSLSSDALAFLSQTPIPLYRFILLERANNPSAQFSTVTRDIADKLALSHLYSGLLATIEVVRDRVGDTDMTESKQVKAFMKDLDVVASAIINEQQTTEFRLQELSNIANHMHRVETQLKKRLSAETISSMNWSSKG
SIO_010081: HF888_RS16385
subclass of: SO_0000673
so part of: HF888_RS16385
location: 23560..24987
location: region:23560-24987:1
so has part: feature:23560-24987:1:exon

WP_007019356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23560-24987:1:exon

HF888_RS16390
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16390
old locus tag: HF888_16390
so part of: sequence
location: 24992..28108
location: region:24992-28108:1
so has part: feature:24992-28108:1:exon
subclass of: SO_0000010

position:24992:1
position: 24992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28108:1
position: 28108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24992-28108:1:exon

HF888_RS16390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16390
old locus tag: HF888_16390
inference: COORDINATES: protein motif:HMM:NF019530.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraG N-terminal domain-containing protein
translation: MNWEVITYGNAELLTLVFNGIAMIFGGADIWGAMRTIALISFIAWMFQVAFSKGDINPKWLIGFIIILSAVLMPRTDVVVTDRIYPSNTTVVSNVPLGLAATSSFLNNTSDWLARTIEVVFSLPNGHKYSDSGMLWGNRLMQATMEHRVADPMTAGNLARFAESCIIMDLGLERYSLEDLSTEDDLASFFANSSSILYFNYKDQAGSGSLTQCNLGWQQIVDDIDANLDAEFGLLGRLISRDENATSEIVSRVKTSLPVGLQYFAGSAKTESDILKQNMILNSLETGLGSSYSNVSESWVIAKAERDRSITQSALARIGENTLPLARNIYEALLYAAFPIIAMMLMLPTAGKVALGYVKALAWINLWIPMYALINFVANYYAQNAIQALPDASTGISLLNQSALYRELNEASEMAGYMSLSIPLLAWMFVQQGGSLAAGMANRMVASYESAVDGAASSASSGNYNQGNVNMDNLNAFKTDSSIQNTGGFTQSTNDLGSMKTSFDGSRSTMQLDQSSAGFSLDFGSMTSERLSAQYSESVQQLENTSRSLAETNDSAYKQSIDFGENLSQSDMTKDVSVGSDTTSYQDSLQEVNTLRNQAAKELGLTDDEMTRAMGRVQAGVDWKSDESFWGGLAEKASGLSVSASASASGEIASESRASELYRAVTDFASSDQYTSAVSDMAQVTQSLAAERTDASSSDFSEKIGSTVSDQMQYREDKTEALAEVNQAQASRDRVEAATANMSKQMLDEFLVFSTKNNTFDTKSDAMEALADYRDGRDDGRVESAIDNFIDQRMDQMLTSESAKNGESMEQDGYMPEGFSNRNGDDLRSSYEENQSSFEENAQGEVVQHGISGAENTIELKNAESSLNSSEGILANNEQIRQDNSSFSKDQSDIVDAGKETIEKAGDRIQGDTKDTFIENGVGGMSDTEYMDGNRTREGDSSSFTSNSFLNKGVMDRSDLFDTGMNFNTFGENGKGMSPSYDESGKIDYDATSNELKETNNPDTVPDRDRDVNDSYESDMADLGNSRYDDFSNRMKGI
SIO_010081: HF888_RS16390
subclass of: SO_0000673
so part of: HF888_RS16390
location: 24992..28108
location: region:24992-28108:1
so has part: feature:24992-28108:1:exon

WP_007019357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24992-28108:1:exon

HF888_RS16395
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16395
old locus tag: HF888_16395
so part of: sequence
location: 28112..28438
location: region:28112-28438:1
so has part: feature:28112-28438:1:exon
subclass of: SO_0000010

position:28112:1
position: 28112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28438:1
position: 28438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28112-28438:1:exon

HF888_RS16395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16395
old locus tag: HF888_16395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLILLSFGLIFSVFAFAYKGTYSTDTIPGCDFEKGEPLKNIFDFKARDARGVVSILKQETSRLESVAEKFGYNAIVGFQEDIYADSNLKSGVISLRGVGVYATCDKK
SIO_010081: HF888_RS16395
subclass of: SO_0000673
so part of: HF888_RS16395
location: 28112..28438
location: region:28112-28438:1
so has part: feature:28112-28438:1:exon

WP_007019358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28112-28438:1:exon

HF888_RS16400
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16400
old locus tag: HF888_16400
so part of: sequence
location: 28978..29670
location: region:28978-29670:1
so has part: feature:28978-29670:1:exon
subclass of: SO_0000010

position:28978:1
position: 28978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29670:1
position: 29670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28978-29670:1:exon

HF888_RS16400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16400
old locus tag: HF888_16400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF4116 domain-containing protein
translation: MDAIDKVRSGTPLNEIPRSEVSYQVCLAAVNKNGLNLQYIAEKRRNYALCLAACYQNGLSLEFVPAVMRDERIYKVAISRNASMIRLLPPELMSAEIAEIAVKNSGKVLSLIPERLKTFQLCKLAVEQDSSAVPYVPNGHLTPDLFERVALKAIPDHHRSYEVCLNQVSIQGRQLRYVPMAFRDEKMCLAAMSSNSWALEFVPVELHSHSEIERIINRDLEVLPPQQVAI
SIO_010081: HF888_RS16400
subclass of: SO_0000673
so part of: HF888_RS16400
location: 28978..29670
location: region:28978-29670:1
so has part: feature:28978-29670:1:exon

WP_007019359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28978-29670:1:exon

HF888_RS16405
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16405
old locus tag: HF888_16405
so part of: sequence
location: 29670..29972
location: region:29670-29972:1
so has part: feature:29670-29972:1:exon
subclass of: SO_0000010

position:29972:1
position: 29972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29670-29972:1:exon

HF888_RS16405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16405
old locus tag: HF888_16405
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEIKPNSEPVTTEEVKSLVKIGYALDMLLEYVPDEKLGHWRVYIKHKTSLVRPLIGVNNKPREFTMIERALAWGKRTGIRLVKMDLHFSEYKNKYTEKD
SIO_010081: HF888_RS16405
subclass of: SO_0000673
so part of: HF888_RS16405
location: 29670..29972
location: region:29670-29972:1
so has part: feature:29670-29972:1:exon

WP_007019360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29670-29972:1:exon

HF888_RS16410
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16410
old locus tag: HF888_16410
so part of: sequence
location: 30096..30764
location: region:30096-30764:1
so has part: feature:30096-30764:1:exon
subclass of: SO_0000010

position:30096:1
position: 30096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30764:1
position: 30764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30096-30764:1:exon

HF888_RS16410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16410
old locus tag: HF888_16410
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTAKIISVTNGKGGTGKTTVAYPLACGLVSKGHNVLFVDLDPQRSSLKWTAKAQEEDVLNVPRAVGIEKPRFMDDILSLRGSFDYIVIDSPGSLSDELLPAQLLKISDLVFIPIQPSPMDVDDSATILRMTESALIQRDDLKAFVLITRDKEKTILSKTIGNALEDYNIPMFPVRIFDGELHKQLRGSGRTTFDPIQGLSKGEKRLVDNMNDFLNKALEVLQ
SIO_010081: HF888_RS16410
subclass of: SO_0000673
so part of: HF888_RS16410
location: 30096..30764
location: region:30096-30764:1
so has part: feature:30096-30764:1:exon

WP_007019361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30096-30764:1:exon

HF888_RS16415
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16415
old locus tag: HF888_16415
so part of: sequence
location: 30764..31654
location: region:30764-31654:1
so has part: feature:30764-31654:1:exon
subclass of: SO_0000010

position:31654:1
position: 31654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30764-31654:1:exon

HF888_RS16415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16415
old locus tag: HF888_16415
inference: COORDINATES: protein motif:HMM:TIGR00180.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MKGAGFGKQGSPTLEHANQEKLVSSLDELLGQGKPEQILKIHHSKIEPDPLQPRRKIDEAGIKALSESIKLNGQAQPITVIPLGDDTYRIVAGERRWRAAKLADLEVVAYVRGDLDETQIRLIQVAENVDREDMTVEDTARAYVGIVNVLTESGLEKKKAIERAGISKTEFYRWQTINEAFEAEDSSIQIVSTVTADLRSLEEFRRLEKKAPDLSSKIIKKIQGDKLKGSLREEIDSLTKPKKKQEKQSPVSYEIENAELVGEEILVDISKGGKAKSTLKIDKSSLALLNGLFENE
SIO_010081: HF888_RS16415
subclass of: SO_0000673
so part of: HF888_RS16415
location: 30764..31654
location: region:30764-31654:1
so has part: feature:30764-31654:1:exon

WP_007019362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30764-31654:1:exon

HF888_RS16420
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16420
old locus tag: HF888_16420
so part of: sequence
location: 31647..31970
location: region:31647-31970:1
so has part: feature:31647-31970:1:exon
subclass of: SO_0000010

position:31647:1
position: 31647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31970:1
position: 31970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31647-31970:1:exon

HF888_RS16420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16420
old locus tag: HF888_16420
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEEKNITVPGGLNAINLGRHWAAIDGGEQVVALISMNVPNRIKGDRYDLYAQKAREALSVIGEVKSGEVVFDEENGYVFRQNLNHKNRSKKPREPKVYSLDFIQQG
SIO_010081: HF888_RS16420
subclass of: SO_0000673
so part of: HF888_RS16420
location: 31647..31970
location: region:31647-31970:1
so has part: feature:31647-31970:1:exon

WP_007019363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31647-31970:1:exon

HF888_RS16425
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16425
old locus tag: HF888_16425
so part of: sequence
location: 32016..32423
location: region:32016-32423:1
so has part: feature:32016-32423:1:exon
subclass of: SO_0000010

position:32016:1
position: 32016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32423:1
position: 32423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32016-32423:1:exon

HF888_RS16425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16425
old locus tag: HF888_16425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLFLEGLSGIHLPYIFLAFVVVVVCVVISNNPAALLMSIPICLLLSVIGHMILLNEKRDAWSKISESHGYIIDYYQECRESGLFDSGSKLECSTLAIQALSENRSMSKEKATSLIHYWENNLSISSQFDSGNIQ
SIO_010081: HF888_RS16425
subclass of: SO_0000673
so part of: HF888_RS16425
location: 32016..32423
location: region:32016-32423:1
so has part: feature:32016-32423:1:exon

WP_040298365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32016-32423:1:exon

HF888_RS16430
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16430
old locus tag: HF888_16430
so part of: sequence
location: 32587..32808
location: region:32587-32808:1
so has part: feature:32587-32808:1:exon
subclass of: SO_0000010

position:32587:1
position: 32587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32808:1
position: 32808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32587-32808:1:exon

HF888_RS16430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16430
old locus tag: HF888_16430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNSDQFDGALKLGRWYRVVEEYQPDGSIELLVHDTRTGDVYSIEVPDLESYNKLVSLLSDGSITRLKKVMGL
SIO_010081: HF888_RS16430
subclass of: SO_0000673
so part of: HF888_RS16430
location: 32587..32808
location: region:32587-32808:1
so has part: feature:32587-32808:1:exon

WP_040298367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32587-32808:1:exon

HF888_RS16435
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16435
old locus tag: HF888_16435
so part of: sequence
location: 32869..33024
location: region:32869-33024:1
so has part: feature:32869-33024:1:exon
subclass of: SO_0000010

position:32869:1
position: 32869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33024:1
position: 33024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32869-33024:1:exon

HF888_RS16435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16435
old locus tag: HF888_16435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVSELKIKNNPMDDLEKVIPGVVIKKVTHINAIRSKPEESRTKLEKKILS
SIO_010081: HF888_RS16435
subclass of: SO_0000673
so part of: HF888_RS16435
location: 32869..33024
location: region:32869-33024:1
so has part: feature:32869-33024:1:exon

WP_007019365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32869-33024:1:exon

HF888_RS16440
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16440
old locus tag: HF888_16440
so part of: sequence
location: 33413..33751
location: region:33413-33751:1
so has part: feature:33413-33751:1:exon
subclass of: SO_0000010

position:33413:1
position: 33413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33751:1
position: 33751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33413-33751:1:exon

HF888_RS16440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16440
old locus tag: HF888_16440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTITEPFGIKFTTGKLLITTGVAQLIQHANLDIDDIYQRHIACDWSDMAEMDRIANTDAIREGDRIFSAFKLDETCLKQIENAYGELISDKVYVITEADRSHTTILLPIEY
SIO_010081: HF888_RS16440
subclass of: SO_0000673
so part of: HF888_RS16440
location: 33413..33751
location: region:33413-33751:1
so has part: feature:33413-33751:1:exon

WP_007019367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33413-33751:1:exon

HF888_RS16445
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16445
old locus tag: HF888_16445
so part of: sequence
location: 33856..34290
location: region:33856-34290:1
so has part: feature:33856-34290:1:exon
subclass of: SO_0000010

position:33856:1
position: 33856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34290:1
position: 34290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33856-34290:1:exon

HF888_RS16445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16445
old locus tag: HF888_16445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEILSSIFTNTIGGIATVLLFKFLAKRSKKVRREKLVQLSEEKENIENMREDTDLFLRYSFYSLFRMIFLIMVGVFGYLLTLFPSQTVERAPDVWYMFLFTLSAILLVGSFQEARSAELVLDSKKFESYFSKKMKKFKSNDDA
SIO_010081: HF888_RS16445
subclass of: SO_0000673
so part of: HF888_RS16445
location: 33856..34290
location: region:33856-34290:1
so has part: feature:33856-34290:1:exon

WP_040298369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33856-34290:1:exon

HF888_RS16450
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16450
old locus tag: HF888_16450
so part of: sequence
location: 34677..35417
location: region:34677-35417:1
so has part: feature:34677-35417:1:exon
subclass of: SO_0000010

position:34677:1
position: 34677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35417:1
position: 35417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34677-35417:1:exon

HF888_RS16450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16450
old locus tag: HF888_16450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018694192.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MGSQVDTFIKAFNQLVHHRNKYDVFKDFVYLSSISIQNAFLKSQELEGEYLELISKYNKDESLVIASLLGEVIIALEGSHSDFLGAVYMELDIGSSHIGQFFTPYDVSRMMAKAIYADSFSLLEEKPFLTLCEPCVGAGSMVIAIADEMLSNGFNPQNQLWVSCVDIDPLAARMAFIQLSLLGIPAEVIVGNTLTMKVTEVFRTPMHFIGFWDSKLSKLNEDVSLVEPDSIINVEKDQYDLFSLVS
SIO_010081: HF888_RS16450
subclass of: SO_0000673
so part of: HF888_RS16450
location: 34677..35417
location: region:34677-35417:1
so has part: feature:34677-35417:1:exon

WP_007019370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34677-35417:1:exon

HF888_RS16455
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16455
old locus tag: HF888_16455
so part of: sequence
location: 35519..36853
location: region:35519-36853:1
so has part: feature:35519-36853:1:exon
subclass of: SO_0000010

position:35519:1
position: 35519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36853:1
position: 36853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35519-36853:1:exon

HF888_RS16455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16455
old locus tag: HF888_16455
inference: COORDINATES: protein motif:HMM:NF012372.2
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MIMQVLYSKVSESKANKRIWIEGGRLSKAGFDYGEAYTVTYDLENQEIKLELDLFGDRRVSGRKRRGEEKKTPIIDLCSTRITDIVGDSERVRIAIEFGVITVSLHHECRKKIVREYRYRANRSKRRFTTGTLCSGAGISSSSISDGLLSAGFTSKTKWFVDVNLRYLEVADRNNYTVDDETNLIVASIEELENDDLEPVDILNVSLPCDIHAKCGKSKKRIGIAEEDHSITAIVGFLKAIHSVNPSIIVSENVVEAKNSASYLILKSELKRLQYNIHEFILDKEVGGSIEQRKRYWFVATSCGLANPFSDALDHYQRKYFSVGECLEDGKHISDMFKTFDYLEKKEKSDIEKGKGFRQQLVDGNSNSIGTIGKHYAKARSTEPRLIGSNGLSRLFTVVEACRFKLIPEKLVDGCLFTLGHEIQGQSILYGHGWSLGRFISNFR
SIO_010081: HF888_RS16455
subclass of: SO_0000673
so part of: HF888_RS16455
location: 35519..36853
location: region:35519-36853:1
so has part: feature:35519-36853:1:exon

WP_165837052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35519-36853:1:exon

HF888_RS16460
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16460
old locus tag: HF888_16460
so part of: sequence
location: 36958..37347
location: region:36958-37347:1
so has part: feature:36958-37347:1:exon
subclass of: SO_0000010

position:36958:1
position: 36958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37347:1
position: 37347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36958-37347:1:exon

HF888_RS16460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16460
old locus tag: HF888_16460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDSISELVKTVKDRDEVEISERLYFQMLECLPPVDMGSNYFIFQEGDGDRILFEKKCGSHFATMLGGVILNRDFSIGIRFSREHLKSGFKIVHIFRTDYDSGIVDPGLHTDKCFQCVSEMADFINDAI
SIO_010081: HF888_RS16460
subclass of: SO_0000673
so part of: HF888_RS16460
location: 36958..37347
location: region:36958-37347:1
so has part: feature:36958-37347:1:exon

WP_133308544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36958-37347:1:exon

HF888_RS16465
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16465
old locus tag: HF888_16465
so part of: sequence
location: 37508..38413
location: region:37508-38413:1
so has part: feature:37508-38413:1:exon
subclass of: SO_0000010

position:37508:1
position: 37508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38413:1
position: 38413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37508-38413:1:exon

HF888_RS16465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16465
old locus tag: HF888_16465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019281307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MKKRRDLKAEITQKIVDRIEQGGLLPWICPWDIKQCSPIPVNFGTKKAYTGMNVLLLWMEAVDRGYSNNQWLTFKQAKALGGSVRRGEKSTTCIFYKSVEIDDEQEEDGKKQIPVMKPFNVFNVEQIDGLELPNARPIPNIEQGDLNLSLVKSIEQYCKIQGIALRNGGNRAYYSPSLDLIKIPDGFFDASGMAATLAHEAGHSTGHKKRLDRFEKFDNDFDKEIEAYAFEELVAETFSALLCGEYGVPLQTDNHASYLNSWLKAMKGDTSFIFKAASHAYKAFDYFQDSVKAGGASIEAA
SIO_010081: HF888_RS16465
subclass of: SO_0000673
so part of: HF888_RS16465
location: 37508..38413
location: region:37508-38413:1
so has part: feature:37508-38413:1:exon

WP_168367092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37508-38413:1:exon

HF888_RS16470
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16470
old locus tag: HF888_16470
so part of: sequence
location: 38495..39040
location: region:38495-39040:1
so has part: feature:38495-39040:1:exon
subclass of: SO_0000010

position:38495:1
position: 38495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39040:1
position: 39040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38495-39040:1:exon

HF888_RS16470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16470
old locus tag: HF888_16470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRYLSSLFRPNSHRIDTPVKPDFDKNHSCRYTFALADELEREHEEILNCLVLCRQACLSGRYSLVPKFLADFRSILFSHLIKERTILYQELKSHISDDDTLKSIRAFKHEMELFQGDLTSFILKWREEETVKSKTASFLKELNRIGKALVFRFAKEKDTIHSMHRLIPQISTAFQRKKAG
SIO_010081: HF888_RS16470
subclass of: SO_0000673
so part of: HF888_RS16470
location: 38495..39040
location: region:38495-39040:1
so has part: feature:38495-39040:1:exon

WP_007019375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38495-39040:1:exon

HF888_RS16475
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16475
old locus tag: HF888_16475
so part of: sequence
location: 39221..39589
location: region:39221-39589:1
so has part: feature:39221-39589:1:exon
subclass of: SO_0000010

position:39221:1
position: 39221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39589:1
position: 39589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39221-39589:1:exon

HF888_RS16475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16475
old locus tag: HF888_16475
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRREYSILWLIFIVLIVAFSAGAKSEDELNYGETKPFVLYGLVSKGKAELLAQATTRLNDGNIALISTIKMLGEIGTRSFVMDAGVSFKYAIPSIYRCREILSEDRLQKVSSALENRCWEL
SIO_010081: HF888_RS16475
subclass of: SO_0000673
so part of: HF888_RS16475
location: 39221..39589
location: region:39221-39589:1
so has part: feature:39221-39589:1:exon

WP_007019376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39221-39589:1:exon

HF888_RS16480
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16480
old locus tag: HF888_16480
so part of: sequence
location: 39955..40359
location: region:39955-40359:1
so has part: feature:39955-40359:1:exon
subclass of: SO_0000010

position:39955:1
position: 39955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40359:1
position: 40359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39955-40359:1:exon

HF888_RS16480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16480
old locus tag: HF888_16480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDISTTFSALSVAIDSVRRLRDVNNALSSAELNNLVADLLDSLANVKMDLAEVKSELALKDSRILKLEGELELLNETKYAHEKIFLTGDDDPFCPVCFERDSKLIHLRASIYRKSQGYGCPSCGYFTYNELLLV
SIO_010081: HF888_RS16480
subclass of: SO_0000673
so part of: HF888_RS16480
location: 39955..40359
location: region:39955-40359:1
so has part: feature:39955-40359:1:exon

WP_007019378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39955-40359:1:exon

HF888_RS16485
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16485
old locus tag: HF888_16485
so part of: sequence
location: 40364..41011
location: region:40364-41011:1
so has part: feature:40364-41011:1:exon
subclass of: SO_0000010

position:40364:1
position: 40364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41011:1
position: 41011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40364-41011:1:exon

HF888_RS16485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16485
old locus tag: HF888_16485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREFFQPSDHVLKLRRNLLFLCVTYIVHILVQPLTKLKVFEVHIPSELLNLGFPIFISWMAVNYFYYLYAERIQWQSLFIDDELKKDYMVDGVVETLVPVITKLRPGSFSLDTNISGRGPDMYEKQLPSGAERVVLEDMENADRLKEAFQSLNENWNKRVKQDLKLLRGYSSAFSRYHLANKFRFWILDNAIPFLVLVFVVVLIINEAFGFWCYS
SIO_010081: HF888_RS16485
subclass of: SO_0000673
so part of: HF888_RS16485
location: 40364..41011
location: region:40364-41011:1
so has part: feature:40364-41011:1:exon

WP_007019379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40364-41011:1:exon

HF888_RS16490
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16490
old locus tag: HF888_16490
so part of: sequence
location: 41091..41405
location: region:41091-41405:1
so has part: feature:41091-41405:1:exon
subclass of: SO_0000010

position:41091:1
position: 41091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41405:1
position: 41405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41091-41405:1:exon

HF888_RS16490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16490
old locus tag: HF888_16490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLEKFQIDARIGLMNSKPPNLAEIALRAYEYLKYYPDAKQIEIALYLRLKKPETTGVANVSRALKFLREADMDLFDGVLHGKTSYHAAIREMKKRRKDYLSRV
SIO_010081: HF888_RS16490
subclass of: SO_0000673
so part of: HF888_RS16490
location: 41091..41405
location: region:41091-41405:1
so has part: feature:41091-41405:1:exon

WP_007019380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41091-41405:1:exon

HF888_RS16685
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16685
so part of: sequence
location: complement(41402..42016)
location: region:41402-42016:-1
so has part: feature:41402-42016:-1:exon
subclass of: SO_0000010

position:41402:-1
position: 41402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42016:-1
position: 42016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41402-42016:-1:exon

HF888_RS16685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: phosphoribosyltransferase
translation: MGSIVSSLYFSGIYLDLNFITSYPGHKEGSGNAIMDEAIGIFSKCFRIKYLPDLIIRHKTSTRSHVARNTGIQINHLNQLNTIKLNPHPMKNRTEAYKNLIPLSNKTVLVLDDISTRGFSLEAARLYLQRAGAKVVLVSWLKTINTDYEEIRIKRNFKPFEENQFNDEDLEKINSHTYAQHITDNQAPKEITELLKEYDNWDWP
SIO_010081: HF888_RS16685
subclass of: SO_0000673
so part of: HF888_RS16685
location: complement(41402..42016)
location: region:41402-42016:-1
so has part: feature:41402-42016:-1:exon

WP_244957551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41402-42016:-1:exon

HF888_RS16690
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16690
so part of: sequence
location: complement(42165..42629)
location: region:42165-42629:-1
so has part: feature:42165-42629:-1:exon
subclass of: SO_0000010

position:42165:-1
position: 42165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42629:-1
position: 42629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42165-42629:-1:exon

HF888_RS16690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16690
inference: COORDINATES: protein motif:HMM:NF012905.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family hydrolase
translation: MLKGVIFSVEDTIVSINNGPSEELFNELARLSQFLRGKNVEFVVFTNRHWTEAGTGKTLQERLFESWGGFKYFSKVQNPEIPAKPSSSATEYILKEMGWKREEVIYIGASENDMRTAVNGKLLFLRAKWYSDNIDYGFSFSKPKEMAKFLMFLF
SIO_010081: HF888_RS16690
subclass of: SO_0000673
so part of: HF888_RS16690
location: complement(42165..42629)
location: region:42165-42629:-1
so has part: feature:42165-42629:-1:exon

WP_244957552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42165-42629:-1:exon

HF888_RS16500
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16500
old locus tag: HF888_16500
so part of: sequence
location: complement(42623..43582)
location: region:42623-43582:-1
so has part: feature:42623-43582:-1:exon
subclass of: SO_0000010

position:42623:-1
position: 42623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43582:-1
position: 43582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42623-43582:-1:exon

HF888_RS16500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16500
old locus tag: HF888_16500
inference: COORDINATES: protein motif:HMM:NF014533.2
GO function: GO:1990814 - DNA/DNA annealing activity [Evidence IEA]
GO process: GO:0009294 - DNA-mediated transformation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-processing protein DprA
translation: MHSKEYWKNETIAFLALANIKGVGFRTLQKIASNGLGFKSILKSDSKEELQKHIKAKIDPNKSWHDFQLEAWAKGIELARELSAQQTRLIFLNEECYPPLLKKIPDPPYWLFVQGNLDSLNEKPVAIVGTRKPNEDGILLTSIAVAGIASKNRTIISGLADGIDQTAHKAALKYNLKTVAVLGNGLSIDYPAGSEKLKSEIINSGGAIVTEYLPNQTYSAENFVKRNRIQAGLSETIIPAQWKVNSGTGHTVNFAIKYDRKIAGLKLPNQFHGCSENEYIISANGQVFELPIETREFYIIWINHASQSKQAWRYKGKIC
SIO_010081: HF888_RS16500
subclass of: SO_0000673
so part of: HF888_RS16500
location: complement(42623..43582)
location: region:42623-43582:-1
so has part: feature:42623-43582:-1:exon

WP_168367093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42623-43582:-1:exon

HF888_RS16505
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16505
old locus tag: HF888_16505
so part of: sequence
location: 43761..44075
location: region:43761-44075:1
so has part: feature:43761-44075:1:exon
subclass of: SO_0000010

position:43761:1
position: 43761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44075:1
position: 44075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43761-44075:1:exon

HF888_RS16505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16505
old locus tag: HF888_16505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDANNLHMNMPSLSPTTALIFLAVCQLIDSVSEIVTEVIKSQDRKGSHVGASERPNCNEALQDAIGHLIHHPGSTAVLQQSSKGCELIITQNGSVKSKVSLNH
SIO_010081: HF888_RS16505
subclass of: SO_0000673
so part of: HF888_RS16505
location: 43761..44075
location: region:43761-44075:1
so has part: feature:43761-44075:1:exon

WP_168367094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43761-44075:1:exon

HF888_RS16510
type: Gene
subclass of: SO_0000704
RO_0002162: 207949
locus tag: HF888_RS16510
old locus tag: HF888_16510
so part of: sequence
location: complement(44119..44358)
location: region:44119-44358:-1
so has part: feature:44119-44358:-1:exon
subclass of: SO_0000010

position:44119:-1
position: 44119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44358:-1
position: 44358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44119-44358:-1:exon

HF888_RS16510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207949
locus tag: HF888_RS16510
old locus tag: HF888_16510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGDYKTERLDAILDDIVELKSDYNSLQQSMLIKIALALTEAMQQNNLAALRGLTAEISGLDIRVNQLIEAVIVQVANSD
SIO_010081: HF888_RS16510
subclass of: SO_0000673
so part of: HF888_RS16510
location: complement(44119..44358)
location: region:44119-44358:-1
so has part: feature:44119-44358:-1:exon

WP_168367095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44119-44358:-1:exon