Vibrio gangliei strain DSM 104291 plasmid pVgang, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Submitted (25-OCT-2019) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP021871.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.2\nGenome Coverage :: 1192x\nSequencing Technology :: Illumina HiSeq; ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/07/2022 16:34:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,410\nCDSs (total) :: 3,298\nGenes (coding) :: 3,259\nCDSs (with protein) :: 3,259\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 9 of 39\nPseudo Genes (incomplete) :: 33 of 39\nPseudo Genes (internal stop) :: 4 of 39\nPseudo Genes (multiple problems) :: 6 of 39\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024498.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
thioredoxin fold domain-containing protein
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF019575.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022638.2
COORDINATES: protein motif:HMM:NF022884.2
COORDINATES: protein motif:HMM:NF023347.2
COORDINATES: protein motif:HMM:TIGR03752.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03752 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03744.1
GO:0005575 - cellular_component [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012197853.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017082420.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013930076.1
COORDINATES: similar to AA sequence:RefSeq:WP_001355915.1
trimethoprim-resistant dihydrofolate reductase DfrA15
COORDINATES: similar to AA sequence:RefSeq:WP_001424636.1
ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA13
COORDINATES: similar to AA sequence:RefSeq:WP_018918784.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472110.1
COORDINATES: similar to AA sequence:RefSeq:WP_019282658.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF019152.2
COORDINATES: protein motif:HMM:NF018536.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014040.2
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: similar to AA sequence:RefSeq:WP_000361704.1
quinolone resistance pentapeptide repeat protein QnrVC7
COORDINATES: similar to AA sequence:RefSeq:WP_017023691.1
COORDINATES: similar to AA sequence:RefSeq:WP_005377020.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005475717.1
FosG/FosC2-related fosfomycin resistance glutathione transferase
COORDINATES: similar to AA sequence:RefSeq:WP_017420619.1
COORDINATES: similar to AA sequence:RefSeq:WP_005464345.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017821989.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: protein motif:HMM:NF020474.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF022523.2
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: similar to AA sequence:RefSeq:WP_017429376.1
COORDINATES: similar to AA sequence:RefSeq:WP_004741153.1
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_006991878.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000425438.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_308438.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_001039466.1
tetracycline efflux MFS transporter Tet(D)
COORDINATES: similar to AA sequence:RefSeq:WP_000113282.1
tetracycline resistance transcriptional repressor TetR(D)
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
IS91-like element ISVsa3 family transposase
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: similar to AA sequence:RefSeq:WP_001255015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_011070736.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010319831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012197034.1
COORDINATES: similar to AA sequence:RefSeq:WP_000864700.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:TIGR03754.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:NF025706.2
COORDINATES: protein motif:HMM:NF040300.1
COORDINATES: similar to AA sequence:RefSeq:WP_006087357.1
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF025001.2