Roseomonas mucosa strain FDAARGOS_658 plasmid unnamed1.
type: Entry
definition: Roseomonas mucosa strain FDAARGOS_658 plasmid unnamed1.
sequence version: NZ_CP044118.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP044118.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11056373
keyword: RefSeq
source: Roseomonas mucosa
organism: Roseomonas mucosa
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044118.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 688.09x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:47:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,609\nCDSs (total) :: 4,529\nGenes (coding) :: 4,452\nCDSs (with protein) :: 4,452\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 77\nCDSs (without protein) :: 77\nPseudo Genes (ambiguous residues) :: 0 of 77\nPseudo Genes (frameshifted) :: 20 of 77\nPseudo Genes (incomplete) :: 59 of 77\nPseudo Genes (internal stop) :: 12 of 77\nPseudo Genes (multiple problems) :: 14 of 77\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 29647
topology: linear
so has quality: SO_0000987
location: 1..29647
location: region:1-29647:1
RO_0002162: 207340

NZ_CP044118
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11056373
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sciortino, C.
author: Tallon, L.
author: Sadzewicz, L.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Nandy, P.
author: Geyer, C.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Sciortino, C.
author: Tallon, L.
author: Sadzewicz, L.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Nandy, P.
author: Geyer, C.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (17-SEP-2019) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29647:1
position: 29647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29647:1:source
so part of: sequence
organism: Roseomonas mucosa
mol type: genomic DNA
strain: FDAARGOS_658
isolation source: clinical isolate
host: Homo sapiens
culture collection: FDA:FDAARGOS_658
plasmid: unnamed1
country: USA: KY
collected by: University of Louisville

207340
type: Taxonomy
SIO_000068: taxonomy

FOB66_RS22800
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22800
old locus tag: FOB66_22800
so part of: sequence
location: complement(<1..328)
location: region:1-328:-1
so has part: feature:1-328:-1:exon
subclass of: SO_0000010

76529687
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:328:-1
position: 328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-328:-1:exon

FOB66_RS22800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22800
old locus tag: FOB66_22800
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019463315.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MPADPPLALRAGQIVLADWRGDALPKEPNKRRPAVVVEDDGLFAPSYPNAILVPLTEDDGLVIPDLAVAIAPTAENGCSKPCWAVSHLVATTSKLRLRATASHITPEQL
SIO_010081: FOB66_RS22800
subclass of: SO_0000673
so part of: FOB66_RS22800
location: complement(<1..328)
location: region:1-328:-1
so has part: feature:1-328:-1:exon

WP_150357814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-328:-1:exon

FOB66_RS22805
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22805
old locus tag: FOB66_22805
so part of: sequence
location: complement(318..560)
location: region:318-560:-1
so has part: feature:318-560:-1:exon
subclass of: SO_0000010

76529688
type: Gene
SIO_000068: ncbigene

position:318:-1
position: 318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:560:-1
position: 560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318-560:-1:exon

FOB66_RS22805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22805
old locus tag: FOB66_22805
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGVPISIRLDDEVRAELEAQAQSRGIGLATLLRDLATEAARATRRARIRQASAVVGTRVAASDEARAFYEDWGTPRADAG
SIO_010081: FOB66_RS22805
subclass of: SO_0000673
so part of: FOB66_RS22805
location: complement(318..560)
location: region:318-560:-1
so has part: feature:318-560:-1:exon

WP_019463316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:318-560:-1:exon

FOB66_RS22810
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22810
old locus tag: FOB66_22810
pseudo: true
so part of: sequence
location: 860..>1006
location: region:860-1006:1
so has part: feature:860-1006:1:exon
subclass of: SO_0000010

76529689
type: Gene
SIO_000068: ncbigene

position:860:1
position: 860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006:1
position: 1006
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:860-1006:1:exon

FOB66_RS22810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22810
old locus tag: FOB66_22810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006954973.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS256 family transposase
SIO_010081: FOB66_RS22810
subclass of: SO_0000673
so part of: FOB66_RS22810
location: 860..>1006
location: region:860-1006:1
so has part: feature:860-1006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:860-1006:1:exon

FOB66_RS22815
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22815
old locus tag: FOB66_22815
so part of: sequence
location: complement(1076..1792)
location: region:1076-1792:-1
so has part: feature:1076-1792:-1:exon
subclass of: SO_0000010

76529690
type: Gene
SIO_000068: ncbigene

position:1076:-1
position: 1076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1792:-1
position: 1792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1076-1792:-1:exon

FOB66_RS22815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22815
old locus tag: FOB66_22815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MTASAACPSFVGYRFPGEIISQAVWLYFRFPLSLRMVEEMLAFRGIVVSHETLRQWGRKFGQAFANQIRCRLPRTGDKWHLDEVVLKINGVTHWLWRAVDQAGMVLDVLVQSRRDKQAAKRLLRKLLKRQMRPPRVMITDKLASYGAAKKEVMPSVEHRQHKGLNNRAENSHQPTRRRERGMKRFKSAGQAQRFLSAHDGINNLFHLRRDHVTACDYRAARARAFEVWSEVSGVAARA
SIO_010081: FOB66_RS22815
subclass of: SO_0000673
so part of: FOB66_RS22815
location: complement(1076..1792)
location: region:1076-1792:-1
so has part: feature:1076-1792:-1:exon

WP_019463317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1076-1792:-1:exon

FOB66_RS22820
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22820
old locus tag: FOB66_22820
pseudo: true
so part of: sequence
location: complement(<1856..2203)
location: region:1856-2203:-1
so has part: feature:1856-2203:-1:exon
subclass of: SO_0000010

76529691
type: Gene
SIO_000068: ncbigene

position:1856:-1
position: 1856
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2203:-1
position: 2203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2203:-1:exon

FOB66_RS22820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22820
old locus tag: FOB66_22820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012046578.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: FOB66_RS22820
subclass of: SO_0000673
so part of: FOB66_RS22820
location: complement(<1856..2203)
location: region:1856-2203:-1
so has part: feature:1856-2203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1856-2203:-1:exon

FOB66_RS22825
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22825
old locus tag: FOB66_22825
so part of: sequence
location: complement(2303..2704)
location: region:2303-2704:-1
so has part: feature:2303-2704:-1:exon
subclass of: SO_0000010

76529692
type: Gene
SIO_000068: ncbigene

position:2303:-1
position: 2303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2704:-1
position: 2704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2303-2704:-1:exon

FOB66_RS22825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22825
old locus tag: FOB66_22825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014527245.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2442 domain-containing protein
translation: MAELTDTQIDEALARGAAARRTEPRATAARYDRRAGRVIVELSNGCTFAFPARLAQGLERATDEQLAEVEVLGTGTGLHWEALDADLSVPGLLAGLFGTRAFMARQAGRATSPAKAAAARANGARGGRPRKSA
SIO_010081: FOB66_RS22825
subclass of: SO_0000673
so part of: FOB66_RS22825
location: complement(2303..2704)
location: region:2303-2704:-1
so has part: feature:2303-2704:-1:exon

WP_019463319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2303-2704:-1:exon

FOB66_RS22830
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22830
old locus tag: FOB66_22830
so part of: sequence
location: complement(2697..2954)
location: region:2697-2954:-1
so has part: feature:2697-2954:-1:exon
subclass of: SO_0000010

76529693
type: Gene
SIO_000068: ncbigene

position:2697:-1
position: 2697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2954:-1
position: 2954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2697-2954:-1:exon

FOB66_RS22830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22830
old locus tag: FOB66_22830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018076197.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4160 domain-containing protein
translation: MGYAVLMVTVLRIHGLRVVIYANDHDPAHVHVFRDGEAKINLIGRGGLPELVWAEGMSRGEVRRTMQAITGQQAVLLARWREIHG
SIO_010081: FOB66_RS22830
subclass of: SO_0000673
so part of: FOB66_RS22830
location: complement(2697..2954)
location: region:2697-2954:-1
so has part: feature:2697-2954:-1:exon

WP_237719430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2697-2954:-1:exon

FOB66_RS22835
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22835
old locus tag: FOB66_22835
so part of: sequence
location: 3102..5300
location: region:3102-5300:1
so has part: feature:3102-5300:1:exon
subclass of: SO_0000010

76529694
type: Gene
SIO_000068: ncbigene

position:3102:1
position: 3102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5300:1
position: 5300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3102-5300:1:exon

FOB66_RS22835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22835
old locus tag: FOB66_22835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011930437.1
GO function: GO:0004386 - helicase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent RecD-like DNA helicase
translation: MPGIPAPSPAPADRGLPTEALAGLVERVTYHSAENGFCVLRVKARGHRDLVTVVGHAASISAGEWVQMSGAWVNDRAHGLQFKAGFLKATQPTTREGIEKYLGSGMIRGIGPVYAARLVAAFGEAVFELIEAEPARLREVTGIGPRRAARIVAGWAGQKVIREIMLFLHANGVGTSRAVRIYKTYGARAVEVITENPYRLARDIRGIGFRTADTVAGRLGIEPTAMIRVRAGISFALAEATGEGHCGLPVGELTALAGKLLEVPAELIEAALALELEAGEVVADTLEGEPCVFLAGLYRAEQAIAGRLRRLATGRQPWPAIDADRAIPWVEERTGLALAASQREALRLALSSKVLVITGGPGVGKTTLVNAILRVIRARGVEVALCAPTGRAARRLSESTGLEARTIHRLLESDPKTGGFKRDETNPLACQLLVADETSMVDVPLMRALLRALPDEAALLLVGDVDQLPSVGPGQVLADVIGSGALPVVRLSEVFRQAAESRIVTSAHRINRGRLPELEATAGSDFFFVGAEEPEEGVRKLLTLVGERIPARFGLDPIRDVQVLCPMNRGGLGARALNAALQAALNPPGELRVERFGWTFGPGDKVMQVANSYDREVFNGDLGVITGVDLEEGELTVVFDGREVAYGFGELDELVLAYATTIHKAQGSEYPAVVIPLSTQHYAMLARNLLYTGVTRGRKLVVLLGQRRALAIAVRNQGARRRWSKLREWLAL
SIO_010081: FOB66_RS22835
subclass of: SO_0000673
so part of: FOB66_RS22835
location: 3102..5300
location: region:3102-5300:1
so has part: feature:3102-5300:1:exon

WP_019463321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3102-5300:1:exon

FOB66_RS22840
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22840
old locus tag: FOB66_22840
so part of: sequence
location: 5508..6155
location: region:5508-6155:1
so has part: feature:5508-6155:1:exon
subclass of: SO_0000010

76529695
type: Gene
SIO_000068: ncbigene

position:5508:1
position: 5508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6155:1
position: 6155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5508-6155:1:exon

FOB66_RS22840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22840
old locus tag: FOB66_22840
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTVLTLAGSKGGCGKSTLGRAMSALLAREGASFAVVDADPNKALSRWLTAIYEGPEITHCAEANEDRLAHLIAELRDQHDLVLVDTAGFENLGSSVAIASADAVLIPCKASEADLYEARTTATKVKSLSVTTRRTIPAWVILNSVRTTAVAAHAAEQIKEAGLERLSASLGHRADYEAVSHTGKMPTSGAAFREVTDLIAELRAKDAMPAVRVTA
SIO_010081: FOB66_RS22840
subclass of: SO_0000673
so part of: FOB66_RS22840
location: 5508..6155
location: region:5508-6155:1
so has part: feature:5508-6155:1:exon

WP_193009577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5508-6155:1:exon

FOB66_RS22845
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22845
old locus tag: FOB66_22845
so part of: sequence
location: 6994..7914
location: region:6994-7914:1
so has part: feature:6994-7914:1:exon
subclass of: SO_0000010

76529696
type: Gene
SIO_000068: ncbigene

position:6994:1
position: 6994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7914:1
position: 7914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6994-7914:1:exon

FOB66_RS22845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22845
old locus tag: FOB66_22845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014106917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MGTVHRLIETQGKMAALATDIDRRVVEAASSYMADEDSNVGFIYSGWTQAALPHKRLPDDAIWKISSEHVTLLVEPGRRTVDSCEEAEWVGVPYGSRARLILLFLQSEALRTGGREIELGRSLRAWLSRLGIPIGGKSFKDVREQAERISRCRLTFHIRTAGRAGLVNQNIVDTAMFVGSDDTSQGSLFTDTVRLSESFFEQLQKHPVPIEEAAIKALSNNSMALDIYCWLTYRLHVLQSPKPISWKALQGQFGVGYKGLHHFKPRFLENLGLACAVYPRAELEVDERGLTLKPSKSPVMPRLIKA
SIO_010081: FOB66_RS22845
subclass of: SO_0000673
so part of: FOB66_RS22845
location: 6994..7914
location: region:6994-7914:1
so has part: feature:6994-7914:1:exon

WP_172539900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6994-7914:1:exon

FOB66_RS23800
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS23800
old locus tag: FOB66_22850
pseudo: true
so part of: sequence
location: complement(8063..>8250)
location: region:8063-8250:-1
so has part: feature:8063-8250:-1:exon
subclass of: SO_0000010

76529864
type: Gene
SIO_000068: ncbigene

position:8063:-1
position: 8063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8250:-1
position: 8250
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8063-8250:-1:exon

FOB66_RS23800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS23800
old locus tag: FOB66_22850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006746361.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
SIO_010081: FOB66_RS23800
subclass of: SO_0000673
so part of: FOB66_RS23800
location: complement(8063..>8250)
location: region:8063-8250:-1
so has part: feature:8063-8250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8063-8250:-1:exon

FOB66_RS23985
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS23985
so part of: sequence
location: complement(8363..8488)
location: region:8363-8488:-1
so has part: feature:8363-8488:-1:exon
subclass of: SO_0000010

79396012
type: Gene
SIO_000068: ncbigene

position:8363:-1
position: 8363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8488:-1
position: 8488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8363-8488:-1:exon

FOB66_RS23985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS23985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPGKKSSQTALTISLRSAAKLQNQGEPLTEADLYDEDGLPV
SIO_010081: FOB66_RS23985
subclass of: SO_0000673
so part of: FOB66_RS23985
location: complement(8363..8488)
location: region:8363-8488:-1
so has part: feature:8363-8488:-1:exon

WP_019463322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8363-8488:-1:exon

FOB66_RS22855
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22855
old locus tag: FOB66_22855
so part of: sequence
location: 8635..9003
location: region:8635-9003:1
so has part: feature:8635-9003:1:exon
subclass of: SO_0000010

76529697
type: Gene
SIO_000068: ncbigene

position:8635:1
position: 8635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9003:1
position: 9003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8635-9003:1:exon

FOB66_RS22855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22855
old locus tag: FOB66_22855
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MEIISGVERRRQWRAADKLRIVAEAERPGACFVEVARRHEVSRSVLWAWRKQARQGVLVAEPAPMFMPLQVATDLPTPTSRAEAAPAASPRIEVALPDGTVIRVDEAISTAALRRIMAALRG
SIO_010081: FOB66_RS22855
subclass of: SO_0000673
so part of: FOB66_RS22855
location: 8635..9003
location: region:8635-9003:1
so has part: feature:8635-9003:1:exon

WP_019463323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8635-9003:1:exon

FOB66_RS22860
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
gene: tnpB
locus tag: FOB66_RS22860
old locus tag: FOB66_22860
so part of: sequence
location: 9000..9347
location: region:9000-9347:1
so has part: feature:9000-9347:1:exon
subclass of: SO_0000010

76529698
type: Gene
SIO_000068: ncbigene

position:9000:1
position: 9000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9347:1
position: 9347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9347:1:exon

FOB66_RS22860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
gene: tnpB
locus tag: FOB66_RS22860
old locus tag: FOB66_22860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIPVPSGVRVWLAVGHTDMRRGMNGLALQAQQALGRDPHAGDLYVFRGRRGDLVKIVWHDGLGMSLYAKRLERGRFIWPSPADGAVAISGAQLAYMLDGIDWRNPQRTWRPEVAG
SIO_010081: FOB66_RS22860
subclass of: SO_0000673
so part of: FOB66_RS22860
location: 9000..9347
location: region:9000-9347:1
so has part: feature:9000-9347:1:exon

WP_019463324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9347:1:exon

FOB66_RS22865
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22865
old locus tag: FOB66_22865
so part of: sequence
location: 9477..11000
location: region:9477-11000:1
so has part: feature:9477-11000:1:exon
subclass of: SO_0000010

76529699
type: Gene
SIO_000068: ncbigene

position:9477:1
position: 9477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11000:1
position: 11000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9477-11000:1:exon

FOB66_RS22865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22865
old locus tag: FOB66_22865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019463325.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MARREAEARVSGAEAMVAHLKLLIAKLKHDRFGASSERGRKLLDQLELELDELVTAASEDAAKAGNETGKQGSGDRAGLPPRRQPVRAPLPAHLPRERVVLPSPTACPCCCGKLSKLGEDVTETLEVVPRSWKVIQTVRERLSCRACETITQPPAPFHPIARGRAGPNLLAMILEAKFGQHLPLNRQSETFAREGVELSVSTVADWVGTCTATLAPLVARIDAHVLAAERLHGDDTTVPLMARGKTVTARLWTYVRDDRPFAGPAPPAAMFRYSRDRTAEHSNRHLAGYTGILQADAYAGFNNLYEAGRKPGPITEAACWAHGRRKLFKLAEVARAPLAAEAVRRIDAIFDAERAINGLPAEQRLAVRREHIAPLAAELEVWMREQRGKLSRHADLAKAMDYMLKRWDAFTRFLTDGRICLTNNAAERELRGVALGRKAWLFAGSDRGGERAAAMYSLVTTAKLNDVDPRAWLADVLARIADHPLSKLDELMPWNWAREMQRRKVAA
SIO_010081: FOB66_RS22865
subclass of: SO_0000673
so part of: FOB66_RS22865
location: 9477..11000
location: region:9477-11000:1
so has part: feature:9477-11000:1:exon

WP_244311148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9477-11000:1:exon

FOB66_RS22870
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22870
old locus tag: FOB66_22870
so part of: sequence
location: 10997..11596
location: region:10997-11596:1
so has part: feature:10997-11596:1:exon
subclass of: SO_0000010

76529700
type: Gene
SIO_000068: ncbigene

position:10997:1
position: 10997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11596:1
position: 11596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10997-11596:1:exon

FOB66_RS22870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22870
old locus tag: FOB66_22870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011511408.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid pRiA4b ORF-3 family protein
translation: MTSNSIARLKITLDEVKPVVLRRVEVPLTIRLDRLHLVLQAAMGWTNSHLYEIRARDVGWGMPDPDWGGGPLDARKARLVDVVEDTGAKTLKYLYDFGDGWEHTVKIERITEAVPGLTYPLLIDATGRCPPEDVGGPWGYAEFLQAIADPKHENHAEMSEWAGEPFDPAKIDIDEHAKAVADLAKAWSRKPAVKRKPAI
SIO_010081: FOB66_RS22870
subclass of: SO_0000673
so part of: FOB66_RS22870
location: 10997..11596
location: region:10997-11596:1
so has part: feature:10997-11596:1:exon

WP_019463326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10997-11596:1:exon

FOB66_RS22875
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22875
old locus tag: FOB66_22875
so part of: sequence
location: 11665..12024
location: region:11665-12024:1
so has part: feature:11665-12024:1:exon
subclass of: SO_0000010

76529701
type: Gene
SIO_000068: ncbigene

position:11665:1
position: 11665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12024:1
position: 12024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11665-12024:1:exon

FOB66_RS22875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22875
old locus tag: FOB66_22875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEPLRQASRVAGQRAALDGVLAGLRGLSLVRQVAQIHGLRPNLAVTVALLRRAVWTAAGVSGADLVAQAVSEQVLGRIPVLQHIAAAVPGSSVTALRLSRLAHVTAEACCPLAAEREG
SIO_010081: FOB66_RS22875
subclass of: SO_0000673
so part of: FOB66_RS22875
location: 11665..12024
location: region:11665-12024:1
so has part: feature:11665-12024:1:exon

WP_147292509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11665-12024:1:exon

FOB66_RS22880
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22880
old locus tag: FOB66_22880
so part of: sequence
location: 12151..12378
location: region:12151-12378:1
so has part: feature:12151-12378:1:exon
subclass of: SO_0000010

76529702
type: Gene
SIO_000068: ncbigene

position:12151:1
position: 12151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12378:1
position: 12378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12151-12378:1:exon

FOB66_RS22880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22880
old locus tag: FOB66_22880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003620405.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTVTLRRQGNSVGVTFPAETRIRMGLEVGQDLTLVELADGVKLVKRNLKLERQMQLAREVLREQADALQELARR
SIO_010081: FOB66_RS22880
subclass of: SO_0000673
so part of: FOB66_RS22880
location: 12151..12378
location: region:12151-12378:1
so has part: feature:12151-12378:1:exon

WP_019463481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12151-12378:1:exon

FOB66_RS22885
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22885
old locus tag: FOB66_22885
so part of: sequence
location: 12375..12767
location: region:12375-12767:1
so has part: feature:12375-12767:1:exon
subclass of: SO_0000010

76529703
type: Gene
SIO_000068: ncbigene

position:12375:1
position: 12375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12767:1
position: 12767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12375-12767:1:exon

FOB66_RS22885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22885
old locus tag: FOB66_22885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012224748.1
GO function: GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system death-on-curing family toxin
translation: MSGPEFLEADVVLFLHDQALREYGGVQGVKDEGMLHSALGRPGNKLAYADAGVPDLFDLAAAYAYGLAANHPFNDGNKRTAWGCCVLFLKANGVEIDVAAPRAVERMLRLVEGGLDEAAFAAWLRASRRG
SIO_010081: FOB66_RS22885
subclass of: SO_0000673
so part of: FOB66_RS22885
location: 12375..12767
location: region:12375-12767:1
so has part: feature:12375-12767:1:exon

WP_027297401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12375-12767:1:exon

FOB66_RS22890
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22890
old locus tag: FOB66_22890
so part of: sequence
location: complement(12831..13187)
location: region:12831-13187:-1
so has part: feature:12831-13187:-1:exon
subclass of: SO_0000010

76529704
type: Gene
SIO_000068: ncbigene

position:12831:-1
position: 12831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13187:-1
position: 13187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12831-13187:-1:exon

FOB66_RS22890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22890
old locus tag: FOB66_22890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019462825.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVAGEAAVPAGDVYDGDGRLVPGSGPTFSLGLVTDCAFQAVLHNLDEPGNTIEPGDRLWLLPEGLVPGAALPEHVLASLAAVVRAGRKVVVMADSAEAGNRACEAIGQALDARQGSA
SIO_010081: FOB66_RS22890
subclass of: SO_0000673
so part of: FOB66_RS22890
location: complement(12831..13187)
location: region:12831-13187:-1
so has part: feature:12831-13187:-1:exon

WP_019463073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12831-13187:-1:exon

FOB66_RS22895
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
gene: istA
locus tag: FOB66_RS22895
old locus tag: FOB66_22895
so part of: sequence
location: 13535..15016
location: region:13535-15016:1
so has part: feature:13535-15016:1:exon
subclass of: SO_0000010

76529705
type: Gene
SIO_000068: ncbigene

position:13535:1
position: 13535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15016:1
position: 15016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13535-15016:1:exon

FOB66_RS22895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
gene: istA
locus tag: FOB66_RS22895
old locus tag: FOB66_22895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011053314.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MRLYMKFRRTEPVPIAAAKAGFSTATAYRIEQDPRPPSLKAPPRERRRPDPLAAVWDSEIVPLLRSAPGLRPIAIFEEVLRRHPELGAGVRRTLERRIRSWRALHGPEQEVIFRQVHEPGRLGLSDFTDMGELAVSTAGEPLEHRLYHFRLAYSGFEHAHVVLGGESYVALAEGLQDALWALGGVPHEHRSDSLSAAFRNLDRDAREDLTRRYEALCAHCGMEPSRNNPGLAHENGSIEGAHGHLKAAIADALLLRGSRDFADLTAYRRFVDEVVGRRNARLAPRIELERAALQDLPPRRTADHEEAIVAVTSSSGFVLRKVFYSVPSRLIGHRLRVRLHDDRLEVYLGSSHQLTLPRGRRQPDGRHGHVVDYRHVIHSLRRKPMALLGLVYRDSLFPRPSYARAFEAMLARQSARQACRTMVEILALAHERACEAELADVLNALLEAGNLPDMAELRARFRPDAAALPGVVVAHPALGAYEEIGTVRQGDAA
SIO_010081: FOB66_RS22895
subclass of: SO_0000673
so part of: FOB66_RS22895
location: 13535..15016
location: region:13535-15016:1
so has part: feature:13535-15016:1:exon

WP_026033557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13535-15016:1:exon

FOB66_RS22900
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
gene: istB
locus tag: FOB66_RS22900
old locus tag: FOB66_22900
so part of: sequence
location: 15013..15822
location: region:15013-15822:1
so has part: feature:15013-15822:1:exon
subclass of: SO_0000010

76529706
type: Gene
SIO_000068: ncbigene

position:15013:1
position: 15013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15822:1
position: 15822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15013-15822:1:exon

FOB66_RS22900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
gene: istB
locus tag: FOB66_RS22900
old locus tag: FOB66_22900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009492089.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MSAADPIDAGRLSLALNDLRLPAIKLIWPDFAARADKEGWPAARLLATLVEHELAERANRRIQRHLEEARLPPGKTLDNFDFEAIPMLSKAQVMALAAGDSWLEKGANLLAFGPPGTGKSHLAAALGLALVENGWRVLFTRTTDLVQKLQAARRDLQLEAAITKLDKYHLLILDDIAYVTKDQAETSVIFELIAARYERRSLFITSNQPFGEWNRIFPDQVMALAAVDRLVHHATIFEMNVESYRRRAAVERKRGPGRPPTRATINTSS
SIO_010081: FOB66_RS22900
subclass of: SO_0000673
so part of: FOB66_RS22900
location: 15013..15822
location: region:15013-15822:1
so has part: feature:15013-15822:1:exon

WP_019463070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15013-15822:1:exon

FOB66_RS22905
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22905
old locus tag: FOB66_22905
so part of: sequence
location: complement(15814..16152)
location: region:15814-16152:-1
so has part: feature:15814-16152:-1:exon
subclass of: SO_0000010

76529707
type: Gene
SIO_000068: ncbigene

position:15814:-1
position: 15814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16152:-1
position: 16152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15814-16152:-1:exon

FOB66_RS22905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22905
old locus tag: FOB66_22905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAWIVAFSLLLTQAGTAMAQTIAVPSDPRAHYELVGKVRRDDGLVEITTRRQGPSGTSFARREVDCRRRMARQSGCEQRDNQDESLWSRRLDDCRGATRAQEISGTARQSG
SIO_010081: FOB66_RS22905
subclass of: SO_0000673
so part of: FOB66_RS22905
location: complement(15814..16152)
location: region:15814-16152:-1
so has part: feature:15814-16152:-1:exon

WP_026033556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15814-16152:-1:exon

FOB66_RS23805
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS23805
old locus tag: FOB66_22910
pseudo: true
so part of: sequence
location: complement(16149..>16238)
location: region:16149-16238:-1
so has part: feature:16149-16238:-1:exon
subclass of: SO_0000010

76529865
type: Gene
SIO_000068: ncbigene

position:16149:-1
position: 16149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16238:-1
position: 16238
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16149-16238:-1:exon

FOB66_RS23805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS23805
old locus tag: FOB66_22910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019462891.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transcriptional regulator
SIO_010081: FOB66_RS23805
subclass of: SO_0000673
so part of: FOB66_RS23805
location: complement(16149..>16238)
location: region:16149-16238:-1
so has part: feature:16149-16238:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16149-16238:-1:exon

FOB66_RS22915
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
gene: istA
locus tag: FOB66_RS22915
old locus tag: FOB66_22915
so part of: sequence
location: 16352..17851
location: region:16352-17851:1
so has part: feature:16352-17851:1:exon
subclass of: SO_0000010

76529708
type: Gene
SIO_000068: ncbigene

position:16352:1
position: 16352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17851:1
position: 17851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16352-17851:1:exon

FOB66_RS22915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
gene: istA
locus tag: FOB66_RS22915
old locus tag: FOB66_22915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_043766075.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MLVVETVAKIRRLHRVQGKSIKAICRELGISRKVVRKVLRSGETEFRYSRARQPQPKLGPWQAELERLLEANEARPRRERLTLVRVYETLRELGYEGGYDAVRRHARGWQASRATAVAAAFVPLSFAPGEAYQFDWSHEVVLIGGTTVTVKVAHVRLCYSRMLFVRAYPRETQEMVFDAHDRAFAFFRGTCTRGIYDNMRTAVDAILVGRDRAYNRRFLRMCSHYLVEPVACTPASGWEKGQVENQVGLVRERFFTPRLRVRSYEELNALLLDRCVSHARANRHPEQRERTVWEAFEAERPSLVPYAGRFDGFHAVPAAVSKTCLVRFDNNKYSVMASAVGRPVEIRAYAERIELRQDGRVVGEHRRVFGRDQTVFDPWHYVPVLARKPGALRNGAPFKDWLLPSALERVRRKLATATDGDRQMVEILTRVLDDGLAAVEAACSEALREGVHSADVILNILARQREPPPPVTILTPEALRLRHAPLADCTRYDSLRRGP
SIO_010081: FOB66_RS22915
subclass of: SO_0000673
so part of: FOB66_RS22915
location: 16352..17851
location: region:16352-17851:1
so has part: feature:16352-17851:1:exon

WP_115359429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16352-17851:1:exon

FOB66_RS22920
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
gene: istB
locus tag: FOB66_RS22920
old locus tag: FOB66_22920
pseudo: true
so part of: sequence
location: 17851..18579
location: region:17851-18579:1
so has part: feature:17851-18579:1:exon
subclass of: SO_0000010

76529709
type: Gene
SIO_000068: ncbigene

position:18579:1
position: 18579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17851-18579:1:exon

FOB66_RS22920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
gene: istB
locus tag: FOB66_RS22920
old locus tag: FOB66_22920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_043766072.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
SIO_010081: FOB66_RS22920
subclass of: SO_0000673
so part of: FOB66_RS22920
location: 17851..18579
location: region:17851-18579:1
so has part: feature:17851-18579:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17851-18579:1:exon

FOB66_RS22925
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22925
old locus tag: FOB66_22925
pseudo: true
so part of: sequence
location: <18663..19300
location: region:18663-19300:1
so has part: feature:18663-19300:1:exon
subclass of: SO_0000010

76529710
type: Gene
SIO_000068: ncbigene

position:18663:1
position: 18663
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:19300:1
position: 19300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18663-19300:1:exon

FOB66_RS22925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22925
old locus tag: FOB66_22925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011982578.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS630 family transposase
SIO_010081: FOB66_RS22925
subclass of: SO_0000673
so part of: FOB66_RS22925
location: <18663..19300
location: region:18663-19300:1
so has part: feature:18663-19300:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18663-19300:1:exon

FOB66_RS23990
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS23990
old locus tag: FOB66_22930
so part of: sequence
location: 19316..20074
location: region:19316-20074:1
so has part: feature:19316-20074:1:exon
subclass of: SO_0000010

79396013
type: Gene
SIO_000068: ncbigene

position:19316:1
position: 19316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20074:1
position: 20074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19316-20074:1:exon

FOB66_RS23990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS23990
old locus tag: FOB66_22930
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005465493.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MAALSELNDPLPVLRAIEEHDRLGEEAFLAKYGYGPARSYWLLHDGRRYASKAILGVAFGYRSPGARPLKASEFAGGESTVRRALTRLGFTVEVDDNAAVAAVLPVLASGDADTTAFDPEGTVDAREKILREIRARRGQKAFRDHLLEAYGARCSISGCSTLDVLEAAHILPYRGEATNHPTNGLLLRADLHTLFDCGLLAIDPDTLQVLVSASIMEPTYREMHGRKLREVSDARLAPSRVALRRHRAGSRV
SIO_010081: FOB66_RS23990
subclass of: SO_0000673
so part of: FOB66_RS23990
location: 19316..20074
location: region:19316-20074:1
so has part: feature:19316-20074:1:exon

WP_027297480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19316-20074:1:exon

FOB66_RS22935
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22935
old locus tag: FOB66_22935
so part of: sequence
location: complement(20083..20754)
location: region:20083-20754:-1
so has part: feature:20083-20754:-1:exon
subclass of: SO_0000010

76529711
type: Gene
SIO_000068: ncbigene

position:20083:-1
position: 20083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20754:-1
position: 20754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20083-20754:-1:exon

FOB66_RS22935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22935
old locus tag: FOB66_22935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010508349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLCVIQCAGSKQANAATLPTMSGRRVMFVARPDAAPPEKGVLYVHPDNISDLTGITWRQRVMAVNTGREPDPGLWIAGKLYRPKAYALLLEKLGIERLFILSAGWGLVRADFLLPDYDITFSTSAEPWKRRRASDKFSDFNALERTQEDIVFLGGKDYLPLFLRLTRSAAGRRLVVYNSANPPVACGCALTRYPTTRRTNWHYDCAEALAAGTWHPDFEAVPS
SIO_010081: FOB66_RS22935
subclass of: SO_0000673
so part of: FOB66_RS22935
location: complement(20083..20754)
location: region:20083-20754:-1
so has part: feature:20083-20754:-1:exon

WP_081798689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20083-20754:-1:exon

FOB66_RS22940
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22940
old locus tag: FOB66_22940
so part of: sequence
location: 21083..21793
location: region:21083-21793:1
so has part: feature:21083-21793:1:exon
subclass of: SO_0000010

76529712
type: Gene
SIO_000068: ncbigene

position:21083:1
position: 21083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21793:1
position: 21793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21083-21793:1:exon

FOB66_RS22940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22940
old locus tag: FOB66_22940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007910245.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MPSEPTTYPGYRFPAEVIQHAVWLYHLFSLSLRDIELILAERGVVVSYESIRRWCLRFGTEFAAKLRKRRPRPGDTWHMDEVYLKINGELFYLWRAVDQHGVVLDILVQERRNATAAKRFFKRLLVGLQYRPRKIVTDGLRSYGVAQREVLPGVQHRTSRYLNNRAENSHRPTRRRERAMQRFKSAGQAQRFLSAHAMIYGHFRPRRHLMAADQYRRERSKAFRIWRQETCAHMAA
SIO_010081: FOB66_RS22940
subclass of: SO_0000673
so part of: FOB66_RS22940
location: 21083..21793
location: region:21083-21793:1
so has part: feature:21083-21793:1:exon

WP_058390100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21083-21793:1:exon

FOB66_RS22945
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22945
old locus tag: FOB66_22945
so part of: sequence
location: 22016..24079
location: region:22016-24079:1
so has part: feature:22016-24079:1:exon
subclass of: SO_0000010

76529713
type: Gene
SIO_000068: ncbigene

position:22016:1
position: 22016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24079:1
position: 24079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22016-24079:1:exon

FOB66_RS22945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22945
old locus tag: FOB66_22945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF1156 domain-containing protein
translation: MGSALYAVALKTPQGLKFRPPQNADLEALDAAEAQLQQWRGDWETRNLIPAEEYPLTTTDARPRTYGMPRWADMFSPRQLLGFGVLMEELQALRPAILADEGEDAGEAIVHLLAFVIDKLTNYNCMMASWHTSHQVIRGVFDRHDFSFKLTFTEMMPVQGTGGLAWAIDSVIEAYGGVAKLPMATARSEIVCSQGSATSLIHLDDKSLDAVVVDPPYSDNVQYSELADFFYVWLKRSQGSRRPEWFSSLLCENADEAVKNDARFRSSFKTAKEAAAAAQAHYQSLMTKVFAEAHRVLRQDGVLTVMFTHKKQEAWEALFASLIEAGFTITATWPVKTESEHSLHQAKKNAAQSTVILVARVRPDHAGTGYFDTAMQARIRTAAEAAAERLSAEGLNPVDQLVGSFGPAMEVFSAYDQVRTDTGEPVNVGAAIDIAADAVAGWRIRQLAQAGLQGVEAEAQFALLCWATLSAAEFRFNEAKLLGHAVGMDVSSLEQAGLIAVKADKVNILSAANRRRAEPLTEAEAQQLLFGWEPGKGKRIKKTEALKIHPRDTVFRTHLDKAQALALTYVDAGGGAAGIGAARSFTTRHGIKLGDPIVRLIEALLRAAPPALRREKNAVAQKFAEFRAWHAMLQPVFGLTPPDWTEKKPDQAVLDLLPKSAMPSAEDAEEVEIEDEDDDEGEEDEEE
SIO_010081: FOB66_RS22945
subclass of: SO_0000673
so part of: FOB66_RS22945
location: 22016..24079
location: region:22016-24079:1
so has part: feature:22016-24079:1:exon

WP_150357818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22016-24079:1:exon

FOB66_RS22950
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22950
old locus tag: FOB66_22950
so part of: sequence
location: 24076..25401
location: region:24076-25401:1
so has part: feature:24076-25401:1:exon
subclass of: SO_0000010

76529714
type: Gene
SIO_000068: ncbigene

position:24076:1
position: 24076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25401:1
position: 25401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24076-25401:1:exon

FOB66_RS22950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22950
old locus tag: FOB66_22950
inference: COORDINATES: protein motif:HMM:NF012955.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MSAVPAAMCDQVLALPISGEAFLLRRRGHAVLVDGGWKKDNVTRVLATHLPAIKPLDIVVCTHGDGDHAGGLPDVLRHWPGGIGQVWLPGRWVGVVPELMKNPKGFVDQLIRELDTLIRENAPDPLVEAPFTRFEESTDPVPADISGLGQEAPPVRDADRADASDEVPAGGEDWDDPEIDLGTTEPTDDPPWFAELRGAKNLPIEKVADAAFQSARSRILYRKRKRRLSTAAATAWLGMVDTVEAIRRIAAAAIARRLRIRWFDYHAFASMRRPSGGVCGFLEPINAREQAPAPFKLSFLMRLTVINRQSLVFLAPPKLSRLGVLFCGDSPLGDGRRFAQSFLRHSRPPDLPIVATAPHHGAETNRAAYDHMRHWADVLVLLRAGGDRDQPGPTFKALDWPLKVCAACPGSGRPAHVAGVASPGRHPWFPLAIVGMPCGCA
SIO_010081: FOB66_RS22950
subclass of: SO_0000673
so part of: FOB66_RS22950
location: 24076..25401
location: region:24076-25401:1
so has part: feature:24076-25401:1:exon

WP_081798676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24076-25401:1:exon

FOB66_RS22955
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22955
old locus tag: FOB66_22955
so part of: sequence
location: 25453..29013
location: region:25453-29013:1
so has part: feature:25453-29013:1:exon
subclass of: SO_0000010

76529715
type: Gene
SIO_000068: ncbigene

position:25453:1
position: 25453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29013:1
position: 29013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25453-29013:1:exon

FOB66_RS22955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22955
old locus tag: FOB66_22955
inference: COORDINATES: protein motif:HMM:NF012403.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase-related protein
translation: MSSTAPSSLREFAWPRFLRAPDGQLVARLYEPGLRCAVRYDRCCAYFSSSVLAAAASGFGAFIQRIVDGAITKKPALRLLVNEELAELDVRALLDAGDDTPLIDALLARLGTPETALQKGRLEMLAWLAREGWLEMKVGVMRQGDGILHAKFGLFVDAAEDAVIFAGSGNESAKGIRGNYEKLEISRSWDDPERHAHFRDEFELLWSGDDPAVVTVSLPDAVRDELIKLAPEAPPVSEPEDNRRRQRAAMLWGYALEAPYMPDGGAATCDAMAPVTLWPHQRHVVAETAAAWPEGRLLCDEVGMGKTVEAILTLRRLLAGRGVKRALILPPANLLPQWQGELREKGGLRVPRMEGPKTLVWPDGTKQAVSSLAEALEEPLLLLSRETARSEGNLPTLMAATPWDLVLLDEGHAARRASQIEGEFNAPTLLLGLLRHMQMKGQARSFMILSATPMQTHPWEPWDLLQVLGEGGLWLSGFHIVRRFHEALASLDRGTLPRSEGMALARTLAATPHCPPAPASLGLPPIDDADAFAKALRFLPAASRQDAVRWMRVCSPLVRRMHRNTRRTLRKYFEMGLLDRPPPTRDVKDDPFGFETAEEREVYEAVTSYIDRRFNELENQKPGKGFVMTIYRRRAASSPVALRKSLERRATGLKAVIAQHAPDPSVLDIEDAQELEDLLNVKLTSALPETPKEARAELVEVEELLERIAALGALDTKRDRLVARTKQLTGDGRAVLIFTGYSDTMVYLRDALVGAFGASVASYSGEGGALRSGNGWVPASKEVVTKALRDGTIKVLVCTDAASEGLNLQAAGALVNFDLPWNPSKVEQRIGRIDRIGQELPILPVVNLYLKHSIDERVYKALASRCGLFETFVGPMQPVLSQALRMLIGREEVDEEALGRAADEIRANPTLMQAFPEDEPVPMAVEAGLVLASDTEALLAALDGTGVRVTSESNALHRIGDGPLCLVTHPSAITTSAEAACVDGLDQRQHTMHRLLQQPGERLPLLLVSAEAGAFRVTLCAWLEGASIQEVSSFSDLKVLVTSWDGQNVPTGAWQTACAKLRIAAQSKVAKMVQQFEAGDRTKAVAQNEAVRLRLIDELGRLLICFEPDTDDLNGKFYRLASEQTPTAHRLQNVFERLGGYPDWEGHHIADLREFRENLGPSQVKSRLTGRELDAALADPRWADQG
SIO_010081: FOB66_RS22955
subclass of: SO_0000673
so part of: FOB66_RS22955
location: 25453..29013
location: region:25453-29013:1
so has part: feature:25453-29013:1:exon

WP_115359422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25453-29013:1:exon

FOB66_RS22960
type: Gene
subclass of: SO_0000704
RO_0002162: 207340
locus tag: FOB66_RS22960
old locus tag: FOB66_22960
so part of: sequence
location: complement(29082..29492)
location: region:29082-29492:-1
so has part: feature:29082-29492:-1:exon
subclass of: SO_0000010

76529716
type: Gene
SIO_000068: ncbigene

position:29082:-1
position: 29082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29492:-1
position: 29492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29082-29492:-1:exon

FOB66_RS22960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 207340
locus tag: FOB66_RS22960
old locus tag: FOB66_22960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019463221.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MTLRYLLDTNLCIRVLRDRPAGLRGRFNAEAAALCTSDVVLYELLYGAERSARPAETRREVERFVARLSVLPFDGDAAAHTAEIRASLERRGGVIGPYDLMIVGQARSRGLVVVTGNLSEFGRVEGLRCEDWLAGA
SIO_010081: FOB66_RS22960
subclass of: SO_0000673
so part of: FOB66_RS22960
location: complement(29082..29492)
location: region:29082-29492:-1
so has part: feature:29082-29492:-1:exon

WP_019463149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29082-29492:-1:exon