Paracoccus jeotgali strain CBA4604 plasmid pCBA4604-02, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.
Genomic analysis of Paracoccus sp. CBA4604
Submitted (20-DEC-2017) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP025585.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 146.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/26/2022 04:14:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,224\nCDSs (total) :: 3,168\nGenes (coding) :: 3,081\nCDSs (with protein) :: 3,081\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 87\nCDSs (without protein) :: 87\nPseudo Genes (ambiguous residues) :: 0 of 87\nPseudo Genes (frameshifted) :: 54 of 87\nPseudo Genes (incomplete) :: 38 of 87\nPseudo Genes (internal stop) :: 14 of 87\nPseudo Genes (multiple problems) :: 16 of 87\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03026.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005609624.1
GO:0003824 - catalytic activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014529321.1
COORDINATES: protein motif:HMM:NF023075.2
group I intron-associated PD-(D/E)XK endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611875.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_008878357.1
COORDINATES: similar to AA sequence:RefSeq:WP_017930026.1
COORDINATES: similar to AA sequence:RefSeq:WP_013502871.1
PLP-dependent cysteine synthase family protein
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_011454198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454199.1
COORDINATES: similar to AA sequence:RefSeq:WP_020423743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454201.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011454202.1
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
COORDINATES: protein motif:HMM:NF012745.2