Candidatus Nitrosocaldus cavascurensis strain SCU2 chromosome NCAV, complete sequence.
Archaea; Nitrososphaerota; Nitrososphaeria; Candidatus Nitrosocaldales; Candidatus Nitrosocaldaceae; Candidatus Nitrosocaldus.
Submitted (11-JAN-2018) UNIVERSITY OF VIENNA, Department of Ecogenomics and Systems Biology, Althanstrasse 14, Vienna, 1090, Austria
REFSEQ INFORMATION: The reference sequence is identical to\nLT981265.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 02:00:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,723\nCDSs (total) :: 1,674\nGenes (coding) :: 1,672\nCDSs (with protein) :: 1,672\nGenes (RNA) :: 49\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 2\nPseudo Genes (total) :: 2\nCDSs (without protein) :: 2\nPseudo Genes (ambiguous residues) :: 0 of 2\nPseudo Genes (frameshifted) :: 0 of 2\nPseudo Genes (incomplete) :: 2 of 2\nPseudo Genes (internal stop) :: 0 of 2\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR02928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF014052.2
COORDINATES: protein motif:HMM:NF021287.2
COORDINATES: protein motif:HMM:NF012799.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02076.1
COORDINATES: protein motif:HMM:NF039904.1
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00149.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF012738.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:TIGR01098.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: protein motif:HMM:NF012509.2
COORDINATES: protein motif:HMM:NF010324.0
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001452.0
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF014610.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016363.2
GO:0090529 - cell septum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03675.1
COORDINATES: protein motif:HMM:TIGR03634.1
GO:0000502 - proteasome complex [Evidence IEA]
GO:0004175 - endopeptidase activity [Evidence IEA]
GO:0010498 - proteasomal protein catabolic process [Evidence IEA]
archaeal proteasome endopeptidase complex subunit beta
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF015077.2
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: protein motif:HMM:NF013434.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF018627.2
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: protein motif:HMM:TIGR02350.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036283.1
COORDINATES: protein motif:HMM:TIGR00227.1
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase
COORDINATES: protein motif:HMM:NF005552.0
COORDINATES: protein motif:HMM:NF017017.2
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00114.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00506.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_018039524.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF014093.2
COORDINATES: protein motif:HMM:NF003220.0
COORDINATES: protein motif:HMM:NF003235.0
COORDINATES: protein motif:HMM:TIGR00309.1
GO:0016471 - vacuolar proton-transporting V-type ATPase complex [Evidence IEA]
GO:0008553 - P-type proton-exporting transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:NF013647.2
GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
V-type ATPase 116kDa subunit family protein
COORDINATES: protein motif:HMM:NF014094.2
COORDINATES: protein motif:HMM:TIGR00240.1
GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
aspartate carbamoyltransferase regulatory subunit
COORDINATES: protein motif:HMM:TIGR00670.1
COORDINATES: protein motif:HMM:NF026297.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR02504.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: protein motif:HMM:NF024984.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: protein motif:HMM:NF009990.0
GO:0008199 - ferric iron binding [Evidence IEA]; GO:0004322 - ferroxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0006880 - intracellular sequestering of iron ion [Evidence IEA]
DNA protection during starvation protein
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025178.2
COORDINATES: protein motif:HMM:NF013920.2
COORDINATES: protein motif:HMM:NF004720.0
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF013522.2
COORDINATES: protein motif:HMM:NF013827.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF024804.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014091.2
COORDINATES: protein motif:HMM:NF016310.2
aconitase X catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF003166.0
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: protein motif:HMM:NF003483.0
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014923.2
COORDINATES: protein motif:HMM:NF024918.2
COORDINATES: protein motif:HMM:NF013988.2
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:NF001556.0
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT
COORDINATES: protein motif:HMM:TIGR01467.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01465.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013353.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: protein motif:HMM:NF003211.1
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00587.1
COORDINATES: protein motif:HMM:NF016030.2
COORDINATES: protein motif:HMM:NF014011.2
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
DNA primase small subunit domain-containing protein
COORDINATES: protein motif:HMM:NF015644.2
COORDINATES: protein motif:HMM:NF012345.2
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF023222.2
4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
4-hydroxyphenylacetate 3-hydroxylase family protein
COORDINATES: protein motif:HMM:NF003048.0
tRNA (cytidine(56)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:TIGR00451.1
COORDINATES: protein motif:HMM:TIGR00264.2
nascent polypeptide-associated complex protein
COORDINATES: protein motif:HMM:NF027889.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036281.1
COORDINATES: protein motif:HMM:NF014079.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF003349.0
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006416.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01140.1
GO:0048472 - threonine-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001989.1
COORDINATES: protein motif:HMM:NF002281.0
COORDINATES: protein motif:HMM:TIGR00317.1
GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:NF024214.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF013803.2
COORDINATES: protein motif:HMM:NF004425.0
COORDINATES: protein motif:HMM:NF041083.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014075.2
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012690.2
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013795.2
COORDINATES: protein motif:HMM:NF012787.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF034126.3
exosome complex RNA-binding protein Csl4
COORDINATES: protein motif:HMM:TIGR00322.1
GO:0043364 - glycyl-radical enzyme activating activity [Evidence IEA]
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]
COORDINATES: protein motif:HMM:NF020078.2
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:TIGR00532.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000768.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00735.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: protein motif:HMM:NF013168.2
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF002114.0
imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013773.2
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012263.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF024864.2
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:TIGR00281.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00307.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF014032.2
signal recognition particle subunit SRP19/SEC65 family protein
COORDINATES: protein motif:HMM:NF012600.2
TFIIB-type zinc ribbon-containing protein
COORDINATES: protein motif:HMM:TIGR01978.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018484.2
COORDINATES: protein motif:HMM:NF020398.2
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF037131.2
COORDINATES: protein motif:HMM:TIGR01470.1
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000818.0
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004790.0
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:NF014641.2
COORDINATES: protein motif:HMM:TIGR01980.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013614.2
SufD family Fe-S cluster assembly protein
non-heme iron oxygenase ferredoxin subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018039412.1
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF012389.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:TIGR00162.1
proteasome assembly chaperone family protein
COORDINATES: protein motif:HMM:NF013499.2
GO:0003676 - nucleic acid binding [Evidence IEA]
OB-fold nucleic acid binding domain-containing protein
COORDINATES: protein motif:HMM:NF022932.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF006342.0
COORDINATES: protein motif:HMM:TIGR01020.1
COORDINATES: protein motif:HMM:NF004711.0
COORDINATES: protein motif:HMM:NF013024.2
COORDINATES: protein motif:HMM:NF006341.0
COORDINATES: protein motif:HMM:NF003122.0
COORDINATES: protein motif:HMM:NF014061.2
COORDINATES: protein motif:HMM:TIGR02173.1
COORDINATES: protein motif:HMM:TIGR00425.1
RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
COORDINATES: protein motif:HMM:NF021461.2
COORDINATES: protein motif:HMM:NF024304.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: protein motif:HMM:NF016124.2
tetrahydromethanopterin S-methyltransferase subunit A
COORDINATES: protein motif:HMM:NF013543.2
COORDINATES: protein motif:HMM:NF013982.2
COORDINATES: protein motif:HMM:TIGR03710.1
GO:0018491 - 2-oxobutyrate synthase activity [Evidence IEA]; GO:0047553 - 2-oxoglutarate synthase activity [Evidence IEA]; GO:0019164 - pyruvate synthase activity [Evidence IEA]
2-oxoacid:ferredoxin oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF041171.1
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: protein motif:HMM:NF012441.2
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
orotidine 5'-phosphate decarboxylase / HUMPS family protein
COORDINATES: protein motif:HMM:NF005034.0
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:NF005012.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: protein motif:HMM:NF012549.2
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012566.2
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:NF024634.2
COORDINATES: protein motif:HMM:NF012709.2
COORDINATES: protein motif:HMM:NF012636.2
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: protein motif:HMM:TIGR01974.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012581.2
COORDINATES: protein motif:HMM:NF015057.2
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF013087.2
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
COORDINATES: protein motif:HMM:NF002169.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: protein motif:HMM:NF012436.2
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012304.2
COORDINATES: protein motif:HMM:TIGR02228.1
COORDINATES: protein motif:HMM:NF012572.2
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01575.1
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: protein motif:HMM:NF014527.2
class I SAM-dependent methyltransferase family protein
COORDINATES: protein motif:HMM:NF025589.2
COORDINATES: protein motif:HMM:NF009945.0
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012670.2
COORDINATES: protein motif:HMM:NF004076.0
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF014798.2
COORDINATES: protein motif:HMM:TIGR00875.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: protein motif:HMM:NF019902.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003140.0
COORDINATES: protein motif:HMM:TIGR01018.1
COORDINATES: protein motif:HMM:NF003372.0
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:TIGR00197.1
COORDINATES: protein motif:HMM:NF014099.2
COORDINATES: protein motif:HMM:NF016382.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024240.2
COORDINATES: protein motif:HMM:NF013994.2
COORDINATES: protein motif:HMM:NF003142.0
COORDINATES: similar to AA sequence:RefSeq:WP_018036189.1
NusA-like transcription termination signal-binding factor
COORDINATES: similar to AA sequence:RefSeq:WP_018039449.1
COORDINATES: similar to AA sequence:RefSeq:WP_020247627.1
COORDINATES: protein motif:HMM:NF013046.2
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:TIGR00323.1
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00266.1
COORDINATES: protein motif:HMM:NF014098.2
GO:0043773 - coenzyme F420-0 gamma-glutamyl ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02086.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:TIGR02087.1
3-isopropylmalate dehydratase small subunit
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012267.2
COORDINATES: protein motif:HMM:NF037982.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:NF028455.2
COORDINATES: protein motif:HMM:NF014752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: protein motif:HMM:TIGR02338.1
COORDINATES: protein motif:HMM:NF011470.1
COORDINATES: protein motif:HMM:NF013905.2
COORDINATES: protein motif:HMM:NF003282.1
GO:0000178 - exosome (RNase complex) [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02065.1
COORDINATES: protein motif:HMM:NF003181.1
exosome complex RNA-binding protein Rrp4
COORDINATES: protein motif:HMM:TIGR00291.1
COORDINATES: protein motif:HMM:NF013366.2
COORDINATES: protein motif:HMM:NF003079.0
COORDINATES: protein motif:HMM:NF005004.0
COORDINATES: protein motif:HMM:NF001749.0
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: protein motif:HMM:NF015378.2
COORDINATES: protein motif:HMM:NF015882.2
malic enzyme-like NAD(P)-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018036325.1
COORDINATES: protein motif:HMM:NF024245.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013215.2
COORDINATES: protein motif:HMM:NF014234.2
GO:0008977 - prephenate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006571 - tyrosine biosynthetic process [Evidence IEA]
prephenate dehydrogenase/arogenate dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR01920.1
GO:0004765 - shikimate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001314.0
COORDINATES: protein motif:HMM:TIGR01093.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014064.2
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005556.0
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase
COORDINATES: protein motif:HMM:NF014047.2
COORDINATES: protein motif:HMM:NF013379.2
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00292.1
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
sulfide-dependent adenosine diphosphate thiazole synthase
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:TIGR00574.1
COORDINATES: protein motif:HMM:NF015268.2
COORDINATES: protein motif:HMM:NF016050.2
COORDINATES: protein motif:HMM:NF002207.0
COORDINATES: protein motif:HMM:NF012922.2
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:TIGR01487.1
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002447.0
COORDINATES: protein motif:HMM:NF020287.2
COORDINATES: protein motif:HMM:TIGR00196.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028479.2
COORDINATES: protein motif:HMM:NF012452.2
COORDINATES: protein motif:HMM:NF004912.0
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:TIGR03674.1
COORDINATES: protein motif:HMM:NF024845.2
COORDINATES: protein motif:HMM:NF014560.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: protein motif:HMM:NF014762.2
GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
iron dependent repressor, metal binding and dimerization domain protein
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF010335.0
COORDINATES: protein motif:HMM:NF012899.2
COORDINATES: protein motif:HMM:NF005146.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:NF014088.2
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF021897.2
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: protein motif:HMM:NF013255.2
COORDINATES: protein motif:HMM:NF014054.2
chorismate pyruvate-lyase family protein
COORDINATES: protein motif:HMM:NF012568.2
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013311.2
COORDINATES: protein motif:HMM:NF012407.2
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF014839.2
COORDINATES: protein motif:HMM:TIGR00537.1
COORDINATES: protein motif:HMM:NF016787.2
COORDINATES: protein motif:HMM:NF015812.2
COORDINATES: protein motif:HMM:NF013336.2
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF006331.0
COORDINATES: protein motif:HMM:NF016619.2
methane monooxygenase/ammonia monooxygenase subunit B
COORDINATES: protein motif:HMM:NF016767.2
methane monooxygenase/ammonia monooxygenase subunit C
COORDINATES: protein motif:HMM:NF024344.2
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: protein motif:HMM:TIGR01243.1
COORDINATES: protein motif:HMM:TIGR00489.1
COORDINATES: protein motif:HMM:NF011481.0
COORDINATES: protein motif:HMM:NF003314.0
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013743.2
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF024938.2
bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase
COORDINATES: protein motif:HMM:NF014723.2
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF004724.0
succinate dehydrogenase/fumarate reductase flavoprotein subunit
COORDINATES: protein motif:HMM:NF013307.2
COORDINATES: protein motif:HMM:NF004616.0
succinate dehydrogenase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:TIGR00324.1
GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA]
GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA]
GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018035149.1
COORDINATES: protein motif:HMM:NF007176.0
COORDINATES: protein motif:HMM:NF013334.2
GO:0016151 - nickel cation binding [Evidence IEA]
GO:0051604 - protein maturation [Evidence IEA]
hydrogenase/urease maturation nickel metallochaperone HypA
COORDINATES: protein motif:HMM:TIGR00072.1
COORDINATES: protein motif:HMM:NF012592.2
COORDINATES: protein motif:HMM:NF013242.2
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:NF028488.2
COORDINATES: protein motif:HMM:NF015735.2
muconolactone Delta-isomerase family protein
COORDINATES: protein motif:HMM:TIGR00143.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018032375.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF014058.2
COORDINATES: protein motif:HMM:NF012314.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00491.2
COORDINATES: protein motif:HMM:NF001908.0
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013415.2
COORDINATES: protein motif:HMM:NF003080.0
COORDINATES: protein motif:HMM:TIGR03677.1
COORDINATES: protein motif:HMM:TIGR03990.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF002636.0
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006334.0
COORDINATES: protein motif:HMM:NF021254.2
exosortase/archaeosortase family protein
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF012377.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003013.0
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF012678.2
iron-containing alcohol dehydrogenase family protein
phosphocholine cytidylyltransferase family protein
COORDINATES: protein motif:HMM:NF013250.2
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: protein motif:HMM:NF033579.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: protein motif:HMM:NF024793.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019872.2
COORDINATES: protein motif:HMM:NF013847.2
COORDINATES: protein motif:HMM:NF014479.2
COORDINATES: protein motif:HMM:TIGR00640.1
cobalamin B12-binding domain-containing protein
COORDINATES: protein motif:HMM:NF004017.0
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:NF002243.0
nicotinamide-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF001100.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00936.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006415.0
COORDINATES: protein motif:HMM:NF009475.0
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:NF009455.0
carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
COORDINATES: protein motif:HMM:NF023594.2
Zn-ribbon domain-containing OB-fold protein
COORDINATES: protein motif:HMM:NF004721.0
COORDINATES: protein motif:HMM:NF013707.2
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: protein motif:HMM:NF014794.2
indolepyruvate ferredoxin oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF017999.2
COORDINATES: protein motif:HMM:TIGR00836.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF013611.2
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: protein motif:HMM:TIGR02124.1
hydrogenase expression/formation protein HypE
COORDINATES: protein motif:HMM:TIGR00074.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00075.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF024247.2
COORDINATES: protein motif:HMM:NF016359.2
COORDINATES: protein motif:HMM:TIGR00432.2
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA guanosine(15) transglycosylase TgtA
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: protein motif:HMM:NF007171.0
COORDINATES: protein motif:HMM:TIGR03722.2
GO:0061711 - N(6)-L-threonylcarbamoyladenine synthase activity [Evidence IEA]
KEOPS complex N(6)-L-threonylcarbamoyladenine synthase Kae1
COORDINATES: protein motif:HMM:NF011463.0
COORDINATES: protein motif:HMM:NF014912.2
COORDINATES: protein motif:HMM:NF020334.2
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF000796.0
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: protein motif:HMM:NF013355.2
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013922.2
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF013437.2
fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
COORDINATES: protein motif:HMM:TIGR00729.1
GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03718.1
GO:0003674 - molecular_function [Evidence IEA]
TerC/Alx family metal homeostasis membrane protein
COORDINATES: protein motif:HMM:NF015239.2
GO:0017111 - ribonucleoside triphosphate phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014103.2
GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
GO:0030488 - tRNA methylation [Evidence IEA]
tRNA (guanine(10)-N(2))-dimethyltransferase
COORDINATES: protein motif:HMM:NF013856.2
COORDINATES: protein motif:HMM:NF016098.2
COORDINATES: protein motif:HMM:NF003161.0
COORDINATES: similar to AA sequence:RefSeq:WP_018032260.1
COORDINATES: protein motif:HMM:NF018656.2
formate--phosphoribosylaminoimidazolecarboxamide ligase
COORDINATES: protein motif:HMM:NF014342.2
GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00135.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00132.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: similar to AA sequence:RefSeq:WP_018036389.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036531.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036534.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012355.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: protein motif:HMM:NF012511.2
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
COORDINATES: protein motif:HMM:NF012444.2
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:NF012640.2
anthranilate synthase component I family protein
COORDINATES: protein motif:HMM:NF001658.0
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF002096.0
stress response translation initiation inhibitor YciH
COORDINATES: protein motif:HMM:NF018392.2
Sjogren's syndrome/scleroderma autoantigen 1 family protein
COORDINATES: protein motif:HMM:NF015846.2
preprotein translocase subunit Sec61beta
COORDINATES: protein motif:HMM:NF021370.2
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF009809.0
COORDINATES: protein motif:HMM:TIGR00338.1
GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00408.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF002003.0
GO:0003905 - alkylbase DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF013987.2
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_018003339.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00483.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
translation elongation factor EF-1 subunit alpha
COORDINATES: protein motif:HMM:TIGR01046.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF014057.2
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]; GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
fructose-1,6-bisphosphate aldolase/phosphatase
COORDINATES: protein motif:HMM:NF003302.0
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00433.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
pyridoxal phosphate-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018036306.1
COORDINATES: protein motif:HMM:NF013909.2
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:TIGR01910.1
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:NF004037.0
COORDINATES: similar to AA sequence:RefSeq:WP_018003458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018036740.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003460.1
COORDINATES: protein motif:HMM:NF003312.0
COORDINATES: protein motif:HMM:TIGR01080.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018003521.1
COORDINATES: protein motif:HMM:NF006345.0
COORDINATES: protein motif:HMM:NF013985.2
GO:0030677 - ribonuclease P complex [Evidence IEA]
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF013027.2
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003219.0
COORDINATES: similar to AA sequence:RefSeq:WP_018036745.1
COORDINATES: similar to AA sequence:RefSeq:WP_018036746.1
COORDINATES: similar to AA sequence:RefSeq:WP_018036747.1
COORDINATES: protein motif:HMM:TIGR03672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018039178.1
COORDINATES: protein motif:HMM:NF014637.2
putative RNA uridine N3 methyltransferase
COORDINATES: protein motif:HMM:NF012677.2
COORDINATES: protein motif:HMM:NF003075.0
archaeal proteasome endopeptidase complex subunit alpha
COORDINATES: protein motif:HMM:NF015960.2
COORDINATES: protein motif:HMM:TIGR01162.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004679.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_018036735.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01736.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
phosphoribosylformylglycinamidine synthase subunit PurL
COORDINATES: protein motif:HMM:TIGR01737.1
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: similar to AA sequence:RefSeq:WP_018036731.1
phosphoribosylformylglycinamidine synthase subunit PurS
COORDINATES: protein motif:HMM:TIGR03618.1
PPOX class F420-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: protein motif:HMM:NF001960.0
COORDINATES: protein motif:HMM:NF015952.2
GTP-dependent dephospho-CoA kinase family protein
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF006333.0
COORDINATES: protein motif:HMM:NF017867.2
transcription elongation factor subunit Spt4
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF006878.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009830.0
COORDINATES: protein motif:HMM:NF014056.2
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF038101.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012704.2
COORDINATES: protein motif:HMM:NF017704.2
COORDINATES: protein motif:HMM:NF001679.0
COORDINATES: protein motif:HMM:NF011396.0
COORDINATES: protein motif:HMM:TIGR03972.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF001208.0
COORDINATES: protein motif:HMM:NF004884.0
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase CofG
COORDINATES: protein motif:HMM:NF005609.0
5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH
COORDINATES: protein motif:HMM:NF017442.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015632.2
COORDINATES: protein motif:HMM:NF014050.2
COORDINATES: protein motif:HMM:NF003239.0
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF013029.2
COORDINATES: protein motif:HMM:NF020702.2
COORDINATES: protein motif:HMM:NF020201.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF016265.2
GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016048.2
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:NF003295.0
COORDINATES: protein motif:HMM:NF013213.2
COORDINATES: protein motif:HMM:NF013006.2
COORDINATES: protein motif:HMM:NF016633.2
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024773.2
COORDINATES: protein motif:HMM:TIGR01379.1
GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF018008.2
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03330.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002010.0
COORDINATES: protein motif:HMM:TIGR01800.1
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: protein motif:HMM:NF012517.2
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF010338.0
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:NF014881.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:TIGR02727.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025606.2
DUF4344 domain-containing metallopeptidase
COORDINATES: protein motif:HMM:NF015893.2
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016798.2
COORDINATES: protein motif:HMM:NF003108.1
COORDINATES: protein motif:HMM:NF014084.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF013259.2
COORDINATES: protein motif:HMM:NF013899.2
COORDINATES: protein motif:HMM:TIGR00101.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013858.2
COORDINATES: protein motif:HMM:NF017045.2
COORDINATES: protein motif:HMM:NF012346.2
COORDINATES: protein motif:HMM:NF009686.0
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009682.0
GO:0035550 - urease complex [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018003345.1
COORDINATES: protein motif:HMM:NF015226.2
COORDINATES: protein motif:HMM:TIGR00813.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015370 - solute:sodium symporter activity [Evidence IEA]
Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system.; Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:TIGR01613.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016358.2
COORDINATES: protein motif:HMM:NF013995.2
COORDINATES: protein motif:HMM:NF016330.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF017843.2
COORDINATES: protein motif:HMM:NF016921.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00501.1
COORDINATES: protein motif:HMM:NF019075.2
COORDINATES: protein motif:HMM:NF014910.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF019814.2
COORDINATES: protein motif:HMM:TIGR00037.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00148.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03699.1
cyclic dehypoxanthinyl futalosine synthase
COORDINATES: protein motif:HMM:TIGR00423.1
COORDINATES: protein motif:HMM:NF014658.2
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: protein motif:HMM:NF020933.2
DNA double-strand break repair nuclease NurA
COORDINATES: protein motif:HMM:NF014092.2
COORDINATES: protein motif:HMM:NF028222.2
COORDINATES: protein motif:HMM:NF006081.0
GO:0016829 - lyase activity [Evidence IEA]
3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF003067.0
translation initiation factor IF-2 subunit beta
COORDINATES: protein motif:HMM:NF016157.2
COORDINATES: protein motif:HMM:NF003084.0
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013341.2
COORDINATES: protein motif:HMM:TIGR03665.1
COORDINATES: protein motif:HMM:NF003218.0
COORDINATES: protein motif:HMM:NF003335.0
COORDINATES: similar to AA sequence:RefSeq:WP_018036727.1
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: protein motif:HMM:NF014025.2
COORDINATES: protein motif:HMM:NF015927.2
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF037979.1
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: protein motif:HMM:NF002621.0
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00373
archaeal type; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR01819.1
GO:0043743 - LPPG:FO 2-phospho-L-lactate transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014085.2
GO:0043814 - phospholactate guanylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016555.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036322.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018333.2
GO:0034639 - L-amino acid efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012320.2
COORDINATES: protein motif:HMM:TIGR01578.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase
COORDINATES: protein motif:HMM:NF008909.0
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF015941.2
COORDINATES: protein motif:HMM:NF038114.1
COORDINATES: protein motif:HMM:NF002294.0
COORDINATES: protein motif:HMM:NF018756.2
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013742.2
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: protein motif:HMM:NF014029.2
COORDINATES: protein motif:HMM:NF002677.0
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04297.1
COORDINATES: protein motif:HMM:NF016765.2
COORDINATES: protein motif:HMM:TIGR01728.1
COORDINATES: similar to AA sequence:RefSeq:WP_018032967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018039289.1
COORDINATES: similar to AA sequence:RefSeq:WP_018039290.1
COORDINATES: protein motif:HMM:NF013347.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF001669.0
COORDINATES: protein motif:HMM:NF015690.2
COORDINATES: protein motif:HMM:TIGR00306.2
COORDINATES: protein motif:HMM:NF014764.2
galactose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF002085.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00119.1
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00118.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:NF024865.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF013694.2
magnesium transporter CorA family protein
COORDINATES: protein motif:HMM:NF014788.2
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: protein motif:HMM:NF040947.1
GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]
COORDINATES: protein motif:HMM:NF002325.0
COORDINATES: protein motif:HMM:NF010662.0
[LysW]-aminoadipate/[LysW]-glutamate kinase
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:TIGR02144.1
COORDINATES: protein motif:HMM:NF041070.1
GO:0006526 - arginine biosynthetic process [Evidence IEA]; GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]
alpha-aminoadipate/glutamate carrier protein LysW/ArgW
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:TIGR00106.1
COORDINATES: protein motif:HMM:NF015945.2
COORDINATES: protein motif:HMM:NF002669.0
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016027.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01127.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013934.2
COORDINATES: protein motif:HMM:NF014102.2
COORDINATES: protein motif:HMM:TIGR00490.1
COORDINATES: similar to AA sequence:RefSeq:WP_018036724.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036725.1
formate--phosphoribosylaminoimidazolecarboxamide ligase family protein
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF014470.2
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:TIGR00945.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF013322.2
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF003269.0
COORDINATES: protein motif:HMM:NF016001.2
nitroreductase/quinone reductase family protein
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02460.1
GO:0050504 - mannosyl-3-phosphoglycerate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004417.0
COORDINATES: protein motif:HMM:NF001980.0
COORDINATES: protein motif:HMM:TIGR01230.1
GO:0008783 - agmatinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018039278.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF025091.2
isocitrate lyase/PEP mutase family protein
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014020.2
COORDINATES: similar to AA sequence:RefSeq:WP_018032376.1
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF016166.2
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF004684.0
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: protein motif:HMM:NF012662.2
signal recognition particle protein Srp54
COORDINATES: protein motif:HMM:TIGR00290.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012652.2
type II/IV secretion system ATPase subunit
COORDINATES: protein motif:HMM:TIGR02537.1
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: protein motif:HMM:NF020129.2
GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA]
GO:0006084 - acetyl-CoA metabolic process [Evidence IEA]; GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF013502.2
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: protein motif:HMM:NF015908.2
COORDINATES: protein motif:HMM:NF013867.2
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF004723.0
COORDINATES: protein motif:HMM:NF014028.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: protein motif:HMM:NF024997.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF020132.2
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF024867.2
chromosome segregation SMC family protein
COORDINATES: protein motif:HMM:TIGR00522.1
GO:0004164 - diphthine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013621.2
adenylyltransferase/cytidyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00750.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: similar to AA sequence:RefSeq:WP_018036474.1
COORDINATES: similar to AA sequence:RefSeq:WP_018036475.1
COORDINATES: protein motif:HMM:NF020917.2
GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]
CDGSH iron-sulfur domain-containing protein
COORDINATES: protein motif:HMM:NF002258.1
COORDINATES: protein motif:HMM:NF002316.0
COORDINATES: protein motif:HMM:NF040105.1
COORDINATES: protein motif:HMM:TIGR01902.1
COORDINATES: protein motif:HMM:NF012336.2
COORDINATES: protein motif:HMM:NF024891.2
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013132.2
COORDINATES: protein motif:HMM:TIGR00508.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF024423.2
COORDINATES: protein motif:HMM:TIGR00395.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03683.1
COORDINATES: protein motif:HMM:TIGR00300.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_018039319.1
GO:0016407 - acetyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018036445.1
GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex [Evidence IEA]
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003215.0
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:TIGR03800.1
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: protein motif:HMM:NF009687.0
COORDINATES: protein motif:HMM:NF018242.2
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: protein motif:HMM:NF012936.2
COORDINATES: protein motif:HMM:NF021039.2
COORDINATES: protein motif:HMM:NF021038.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF013494.2
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:TIGR00471.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003210.0
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF008927.0
COORDINATES: protein motif:HMM:NF001985.0
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF021169.2
COORDINATES: protein motif:HMM:NF021916.2
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]; GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009895.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
GO:0015031 - protein transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: protein motif:HMM:NF010147.0
iron-sulfur cluster insertion protein ErpA
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_018039288.1
COORDINATES: protein motif:HMM:NF014100.2
COORDINATES: protein motif:HMM:NF013417.2
ribosomal L7Ae/L30e/S12e/Gadd45 family protein
COORDINATES: protein motif:HMM:NF006336.0
COORDINATES: protein motif:HMM:NF006335.0
COORDINATES: protein motif:HMM:NF007129.0
COORDINATES: protein motif:HMM:TIGR04296.1
PEFG-CTERM sorting domain-containing protein
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF003251.0
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036351.1
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF006757.0
GO:0003994 - aconitate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF003089.1
COORDINATES: protein motif:HMM:NF012341.2
COORDINATES: protein motif:HMM:NF012538.2
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: protein motif:HMM:TIGR00549.1
GO:0004496 - mevalonate kinase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO:0016126 - sterol biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF040647.1
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: protein motif:HMM:TIGR00463.1
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039193.1
COORDINATES: protein motif:HMM:NF010587.0
GO:0008795 - NAD+ synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF021246.2
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
COORDINATES: protein motif:HMM:TIGR01836.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: protein motif:HMM:NF024093.2
COORDINATES: protein motif:HMM:TIGR01439.1
COORDINATES: similar to AA sequence:RefSeq:WP_018031397.1
DNA repair and recombination protein RadA
COORDINATES: protein motif:HMM:TIGR03685.1
COORDINATES: protein motif:HMM:NF012679.2
COORDINATES: protein motif:HMM:NF003244.0
DNA starvation/stationary phase protection protein
COORDINATES: protein motif:HMM:NF002232.0
COORDINATES: protein motif:HMM:TIGR00405.1
COORDINATES: protein motif:HMM:TIGR00327.1
GO:0006886 - intracellular protein transport [Evidence IEA]
protein translocase SEC61 complex subunit gamma
COORDINATES: protein motif:HMM:NF016312.2
COORDINATES: protein motif:HMM:NF013222.2
COORDINATES: protein motif:HMM:NF006343.0
COORDINATES: protein motif:HMM:NF006332.0
COORDINATES: protein motif:HMM:NF006820.0
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014796.2
COORDINATES: protein motif:HMM:NF014990.2
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02187.1
COORDINATES: protein motif:HMM:NF019429.2
COORDINATES: protein motif:HMM:TIGR00702.1
COORDINATES: protein motif:HMM:NF024981.2
COORDINATES: protein motif:HMM:NF017262.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014665.2
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018257.2
COORDINATES: protein motif:HMM:NF012343.2
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF012344.2
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:TIGR01915.1
COORDINATES: protein motif:HMM:NF006230.0
COORDINATES: protein motif:HMM:NF015069.2
COORDINATES: protein motif:HMM:NF013761.2
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024811.2
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013225.2
COORDINATES: protein motif:HMM:NF006367.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:NF012584.2
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: protein motif:HMM:TIGR00268.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
ATP-dependent sacrificial sulfur transferase LarE
COORDINATES: protein motif:HMM:TIGR00299.1
nickel pincer cofactor biosynthesis protein LarC
COORDINATES: protein motif:HMM:NF004863.0
COORDINATES: protein motif:HMM:NF013200.2
electron transfer flavoprotein subunit beta
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: protein motif:HMM:NF033503.1
nickel pincer cofactor biosynthesis protein LarB
PqqD family peptide modification chaperone
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF037270.2
COORDINATES: protein motif:HMM:NF013273.2
COORDINATES: protein motif:HMM:NF003077.0
translation initiation factor IF-2 subunit gamma
COORDINATES: protein motif:HMM:NF037434.2
COORDINATES: protein motif:HMM:NF009623.0
COORDINATES: protein motif:HMM:NF003064.0
translation initiation factor IF-2 subunit alpha
COORDINATES: protein motif:HMM:NF004637.0
COORDINATES: protein motif:HMM:TIGR00379.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014612.2
COORDINATES: protein motif:HMM:NF017944.2
CbiX/SirB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014006.2
COORDINATES: protein motif:HMM:NF000849.0
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: protein motif:HMM:TIGR01034.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013582.2
U6 snRNA-associated Sm-like protein LSm6
COORDINATES: protein motif:HMM:NF020014.2
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF015018.2
COORDINATES: protein motif:HMM:TIGR00191.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0006566 - threonine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019469.2
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024747.2
COORDINATES: protein motif:HMM:NF006826.0
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01251.1
COORDINATES: protein motif:HMM:NF000801.0
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0042779 - tRNA 3'-trailer cleavage [Evidence IEA]
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:TIGR02476.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022972.2
COORDINATES: protein motif:HMM:NF015545.2
COORDINATES: protein motif:HMM:NF015965.2
COORDINATES: protein motif:HMM:NF006811.0
COORDINATES: protein motif:HMM:NF014086.2
COORDINATES: protein motif:HMM:NF016115.2
COORDINATES: protein motif:HMM:TIGR04337.1
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: protein motif:HMM:NF012982.2
COORDINATES: protein motif:HMM:NF025040.2
GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
RpoL/Rpb11 RNA polymerase subunit family protein
COORDINATES: protein motif:HMM:TIGR01384.1
COORDINATES: protein motif:HMM:NF014767.2
COORDINATES: protein motif:HMM:NF004938.0
COORDINATES: protein motif:HMM:NF006330.0
GO:0070967 - coenzyme F420 binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
TIGR03560 family F420-dependent LLM class oxidoreductase
COORDINATES: protein motif:HMM:TIGR01466.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015448.2
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
phenylalanine--tRNA ligase beta subunit-related protein
COORDINATES: protein motif:HMM:NF012753.2
GO:0030234 - enzyme regulator activity [Evidence IEA]
GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: protein motif:HMM:TIGR00972.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR02136.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01857
archaeal-type; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF011011.0
COORDINATES: protein motif:HMM:NF014803.2
COORDINATES: protein motif:HMM:NF007180.0
COORDINATES: protein motif:HMM:NF003217.0
Glu-tRNA(Gln) amidotransferase subunit GatD
COORDINATES: protein motif:HMM:TIGR00134.1
Glu-tRNA(Gln) amidotransferase subunit GatE
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: protein motif:HMM:NF012797.2
GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
metal-dependent transcriptional regulator
COORDINATES: protein motif:HMM:TIGR03671.1
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF013428.2
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:NF014433.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: protein motif:HMM:NF013348.2
COORDINATES: protein motif:HMM:NF012478.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
alanine--glyoxylate aminotransferase family protein
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03399.1
GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020341.2
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:NF014040.2
COORDINATES: protein motif:HMM:TIGR01587.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:TIGR01895.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: protein motif:HMM:TIGR02585.1
type I-B CRISPR-associated protein Cas7/Cst2/DevR
COORDINATES: protein motif:HMM:TIGR01877.1
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: protein motif:HMM:TIGR00653.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000586.1
COORDINATES: protein motif:HMM:NF003198.0
GO:0047294 - phosphoglycerol geranylgeranyltransferase activity [Evidence IEA]
GO:0006650 - glycerophospholipid metabolic process [Evidence IEA]
geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase
COORDINATES: protein motif:HMM:NF025030.2