Corynebacterium heidelbergense strain DSM 104638 plasmid phiDSM104638, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium heidelbergense DSM 104638
Submitted (12-OCT-2020) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP063192.1.\nBacteria and source DNA available from DSM 104638.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; canu v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 122.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 19:03:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,091\nCDSs (total) :: 2,027\nGenes (coding) :: 2,005\nCDSs (with protein) :: 2,005\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 7 of 22\nPseudo Genes (incomplete) :: 16 of 22\nPseudo Genes (internal stop) :: 6 of 22\nPseudo Genes (multiple problems) :: 5 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Corynebacterium heidelbergense
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016119818.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014317008.1
COORDINATES: similar to AA sequence:RefSeq:WP_009681173.1
COORDINATES: similar to AA sequence:RefSeq:WP_013912151.1
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016732.2
COORDINATES: protein motif:HMM:NF013964.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF014520.2