Corynebacterium heidelbergense strain DSM 104638 plasmid phiDSM104638, complete sequence.
type: Entry
definition: Corynebacterium heidelbergense strain DSM 104638 plasmid phiDSM104638, complete sequence.
sequence version: NZ_CP063192.1
sequence date: 2023-02-15
sequence: sequence
division: CON
label: NZ_CP063192.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13404530
keyword: RefSeq
source: Corynebacterium heidelbergense
organism: Corynebacterium heidelbergense
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP063192.1.\nBacteria and source DNA available from DSM 104638.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; canu v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 122.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 19:03:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,091\nCDSs (total) :: 2,027\nGenes (coding) :: 2,005\nCDSs (with protein) :: 2,005\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 7 of 22\nPseudo Genes (incomplete) :: 16 of 22\nPseudo Genes (internal stop) :: 6 of 22\nPseudo Genes (multiple problems) :: 5 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16908
topology: circular
so has quality: SO_0000988
location: 1..16908
location: region:1-16908:1
RO_0002162: 2055947

NZ_CP063192
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13404530
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Corynebacterium heidelbergense DSM 104638
author: Busche, T.
author: Kalinowski, J.
author: Ruckert, C.
journal: Unpublished

2
title: Direct Submission
author: Busche, T.
author: Kalinowski, J.
author: Ruckert, C.
journal: Submitted (12-OCT-2020) CeBiTec, Uni Bielefeld, Sequenz 1, Bielefeld 33615, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16908:1
position: 16908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16908:1:source
so part of: sequence
organism: Corynebacterium heidelbergense
mol type: genomic DNA
strain: DSM 104638
isolation source: preen glands
host: Alopochen aegyptiaca
culture collection: DSM:104638
type material: type strain of Corynebacterium heidelbergense
plasmid: phiDSM104638
country: Germany: Neckar river

2055947
type: Taxonomy
SIO_000068: taxonomy

CHEID_RS10345
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10345
old locus tag: CHEID_10505
so part of: sequence
location: 214..873
location: region:214-873:1
so has part: feature:214-873:1:exon
subclass of: SO_0000010

position:214:1
position: 214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:873:1
position: 873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214-873:1:exon

CHEID_RS10345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10345
old locus tag: CHEID_10505
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MNESDLVAWLASQPWAPATRRSVRASLRTYWAWRARTGRGVNAAAELPRAAVPRAVPRPAADTVILSALRRAEPRVQTMIELMAYGGLRRCEVATVRGEDIAGHWLRVTGKGGHVRAVPLPPHLAARIAANPGWLFPGQIDGHLSARRVGELVGEVLPPGVTAHQLRHRYATTVYAASHDIRAVQRLLGHAKLDTTMIYTAVDDQVASSAAAGAWRLSS
SIO_010081: CHEID_RS10345
subclass of: SO_0000673
so part of: CHEID_RS10345
location: 214..873
location: region:214-873:1
so has part: feature:214-873:1:exon

WP_112769956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214-873:1:exon

CHEID_RS10350
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10350
old locus tag: CHEID_10510
so part of: sequence
location: complement(866..1999)
location: region:866-1999:-1
so has part: feature:866-1999:-1:exon
subclass of: SO_0000010

position:866:-1
position: 866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1999:-1
position: 1999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:866-1999:-1:exon

CHEID_RS10350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10350
old locus tag: CHEID_10510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016119818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: collagen-like protein
translation: MTGYTPRFRLPYPTDGEPIWQGARQIQALAEAIDRQTWAADGATGPQGPAGPSGPQGPKGDTGATGPQGPKGDTGATGPQGPKGDTGATGPAGKDGTGVTIKGSVPSAANLPTGPQTPGTAYIATDTGHMHVSNGTTWNDVGNIQGPQGPKGDTGATGPQGPKGDTGATGPRGPKGDPGVQGPKGDTGATGPQGPKGDAGNTGPVGPTGPAVDLGPLRAELFGGATRTRAPYAEIALGSNLWVPRWSDQVCNNQWTALVDTDGAFTRSGTPGQTYYRAPVAGRYLILYQLMHQGDNARAGGAMKVLLNGTDVTRNSIASRTATPSLEGPTMQLSTDVKLAAGDLIRWAYWYAEDTTIIPAGFGNARSKISIRYMGSS
SIO_010081: CHEID_RS10350
subclass of: SO_0000673
so part of: CHEID_RS10350
location: complement(866..1999)
location: region:866-1999:-1
so has part: feature:866-1999:-1:exon

WP_146743885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:866-1999:-1:exon

CHEID_RS10355
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10355
old locus tag: CHEID_10515
so part of: sequence
location: complement(1996..3507)
location: region:1996-3507:-1
so has part: feature:1996-3507:-1:exon
subclass of: SO_0000010

position:1996:-1
position: 1996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3507:-1
position: 3507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1996-3507:-1:exon

CHEID_RS10355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10355
old locus tag: CHEID_10515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITVKPWVEIDGTRVPCGFLDIGMTPVVMDGLEIKWGRDGYYEKAEPARATVRLWDSTGAWARRIRDSQALGVHVYVKWAAPSGTVTMFRGVIAHAHARRTRHRDWKNTDVWEVTLTAADPTTALGSVYPLPGVLQPGETMDQRKQWLLGLAEYGGLKIADIDYQSGYAPAQTKPVEVGKDSALEVLGAFYESMSGDAWTYDPEANAVRQCERHDGDFTTYLASFDDARGAVMIAASDTVIDGVSRPGVALSACRLGVPDGIEIEASADTDINRVESTWYDGGDNWSARVAYKDAVALNQPRRMLANDTWMTTDWAIELQLQSAWDRARAEGRRPKHPELHHSPGKTFATERLARWWLRCWEDTRPAFVNGDLAHAWLMQEAADWPPLVSPLGGTVTYRATDGWTIHLHVQWMHDRSQVTPMVWINLRQMKWTTTTATQPWWARLIGMSPPAPITTGQPTPDRDVRWGSPGSATREYRFDESMTWADLKYLDNTTREIKDVLT
SIO_010081: CHEID_RS10355
subclass of: SO_0000673
so part of: CHEID_RS10355
location: complement(1996..3507)
location: region:1996-3507:-1
so has part: feature:1996-3507:-1:exon

WP_112769957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1996-3507:-1:exon

CHEID_RS10360
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10360
old locus tag: CHEID_10520
so part of: sequence
location: complement(3504..5438)
location: region:3504-5438:-1
so has part: feature:3504-5438:-1:exon
subclass of: SO_0000010

position:3504:-1
position: 3504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5438:-1
position: 5438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3504-5438:-1:exon

CHEID_RS10360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10360
old locus tag: CHEID_10520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKFLAISIVSDADDKGFRKAARNVEKFTGGLSKLGPALGKFTTMGSAATAAVAAIGGAIGNLGVGMIGVGALAGAALTPLILGMDGVKAAAGAAAEGFNGLKTAASGALESSMRPGFEALNQMMVGLTPAFTQLSTTVGNAFSALATQINNPAIMGGLTAIMDAAGTMVTAMVPGIAQLITGFAAIGPAIAPAAGAIGAALGGIVGQIGQALSSAAQLGTLGSLFQSFAGILGALAPIAGTLMTAFIQMGAAIGPGLQVALQALGQAAAALVGPLTQVAGVVGSALGAAFTALAPAVGPIAEAFASLISAVAPLVGPIAQIAALFGQVLAAALSAIAPLLTQLAGVLASGITSAFQALQPVLPVIANAFTQLSVGMQPLIPAIGQLVQAFVGIIPPIVQLAAGLLPALVNVIIALMPAFVAVAQGAASFIQGLTPLINLIGAILVPVINVLASILGFLARMLAPVIELAVSLGLGFGTLFGAVGRLGGGLVKLMEWVGSLGGKFLNLAGHLVGLHGKLSSVTGVFSRVAGAIADVVGWVANLIGKLASIRWPSPPSWLSSMFGADPVASMYPSAYGQFASGDPAGFLRVATAPATPPGTPTVNVTVNVSGAMVGTTAELAELIERALRDKARITGQSLAVVR
SIO_010081: CHEID_RS10360
subclass of: SO_0000673
so part of: CHEID_RS10360
location: complement(3504..5438)
location: region:3504-5438:-1
so has part: feature:3504-5438:-1:exon

WP_112769958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3504-5438:-1:exon

CHEID_RS10365
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10365
old locus tag: CHEID_10525
so part of: sequence
location: complement(5559..5834)
location: region:5559-5834:-1
so has part: feature:5559-5834:-1:exon
subclass of: SO_0000010

position:5559:-1
position: 5559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5834:-1
position: 5834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5559-5834:-1:exon

CHEID_RS10365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10365
old locus tag: CHEID_10525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKITADIEMMDGTEHKDVRIILADMIRYEEVAKRHKWGGLQDNPITAQSFMAYAAMTRTGVYDPNKGFDEFVTECAGVMADFGDELPPTM
SIO_010081: CHEID_RS10365
subclass of: SO_0000673
so part of: CHEID_RS10365
location: complement(5559..5834)
location: region:5559-5834:-1
so has part: feature:5559-5834:-1:exon

WP_112769959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5559-5834:-1:exon

CHEID_RS10370
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10370
old locus tag: CHEID_10530
so part of: sequence
location: complement(5837..6274)
location: region:5837-6274:-1
so has part: feature:5837-6274:-1:exon
subclass of: SO_0000010

position:5837:-1
position: 5837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6274:-1
position: 6274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5837-6274:-1:exon

CHEID_RS10370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10370
old locus tag: CHEID_10530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014317008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSATLRVRGGKRLRRTLRKAGVDLKRLKAANKAAAEIAKSAAVAATPVGGPYKKAGRGRPRTGGRLKATVRSFASQRSGQIRAGNASRVPYAAPVHWGWPRTKGVQGSGIRPNPWMSTAAKATEPAWLKEYERHVDAIIDSVKGA
SIO_010081: CHEID_RS10370
subclass of: SO_0000673
so part of: CHEID_RS10370
location: complement(5837..6274)
location: region:5837-6274:-1
so has part: feature:5837-6274:-1:exon

WP_112769960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5837-6274:-1:exon

CHEID_RS10375
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10375
old locus tag: CHEID_10535
so part of: sequence
location: complement(6275..6760)
location: region:6275-6760:-1
so has part: feature:6275-6760:-1:exon
subclass of: SO_0000010

position:6275:-1
position: 6275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6760:-1
position: 6760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6275-6760:-1:exon

CHEID_RS10375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10375
old locus tag: CHEID_10535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009681173.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAPNPLPSESPKRKKTVLGPGTLVLGSVGTQLDLSCQVTEITIGAEGDSEDPEYTLCGDTVAGERTYTWTMNVTAFQDLEADGVIDFTWKHAGKEMPFKFVPDSAGTAAVTGRVIIDPVQIGGKVRQKNTSEAEWQLAGAPNFNPNATAATVAASPGATG
SIO_010081: CHEID_RS10375
subclass of: SO_0000673
so part of: CHEID_RS10375
location: complement(6275..6760)
location: region:6275-6760:-1
so has part: feature:6275-6760:-1:exon

WP_112769961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6275-6760:-1:exon

CHEID_RS10380
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10380
old locus tag: CHEID_10540
so part of: sequence
location: complement(6764..7102)
location: region:6764-7102:-1
so has part: feature:6764-7102:-1:exon
subclass of: SO_0000010

position:6764:-1
position: 6764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7102:-1
position: 7102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6764-7102:-1:exon

CHEID_RS10380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10380
old locus tag: CHEID_10540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADYMNALHDLAETLTNRGVPATLDPRDLTVPGAVVSLAEIGPDATMCGDHVATAEVMLVAADNGMPAAMESLFDLFDKVSDLTAGATPATFTWSELPTLPALRLTPIPLED
SIO_010081: CHEID_RS10380
subclass of: SO_0000673
so part of: CHEID_RS10380
location: complement(6764..7102)
location: region:6764-7102:-1
so has part: feature:6764-7102:-1:exon

WP_112769962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6764-7102:-1:exon

CHEID_RS10385
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10385
old locus tag: CHEID_10545
so part of: sequence
location: complement(7105..7398)
location: region:7105-7398:-1
so has part: feature:7105-7398:-1:exon
subclass of: SO_0000010

position:7105:-1
position: 7105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7398:-1
position: 7398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7105-7398:-1:exon

CHEID_RS10385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10385
old locus tag: CHEID_10545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITTAEVARWARIDAADPDLAACVDTVNALVTDWHGEQWPPGAHQGAVMLAARYHRRRNSPGGVETFGDSGAAYIPRYDADLDRLLRINAWATPQVG
SIO_010081: CHEID_RS10385
subclass of: SO_0000673
so part of: CHEID_RS10385
location: complement(7105..7398)
location: region:7105-7398:-1
so has part: feature:7105-7398:-1:exon

WP_146743886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7105-7398:-1:exon

CHEID_RS10390
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10390
old locus tag: CHEID_10550
so part of: sequence
location: complement(7412..8980)
location: region:7412-8980:-1
so has part: feature:7412-8980:-1:exon
subclass of: SO_0000010

position:7412:-1
position: 7412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8980:-1
position: 8980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7412-8980:-1:exon

CHEID_RS10390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10390
old locus tag: CHEID_10550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013912151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTTDTFTPAVQSPPIVAESARTIRGMILPWDEFGRTSGGALKFAPGSIRVPADITRVKLLAGHSPEGTPIGHATDWEATAEGVEMTFKVGSGPDGDRALTAAAEHVIDALSIEAYGIEKDGTTVTSSILSAVALVPMPAFANARVASVLAQAPTPKDETPAEPDDESDDEDDTDAAPPDDPAEPDDESDEDDDDTTTNKETETVKKNTLSPGVMPTPGTPASAEPVHASLSDVLDYLTAAANGDRTAELHAELTDITDAGMINRSAPQWLGELWNGVTYTRRVIPLITQAPLKGRKAIGYRWTKKPGVDKYAGNKAEIPTKPAAVEAVERDAVRWAGGNDLDRIFWDFKETEFLNAYWRAMAESYAFETDQETGKFLVDNATAIDGTADHIVHAVARGSIAIDQDLHSPASFVLLNPADYESILQLTALEAPKYLDLIPATDPSKWVTSQFVPAGTVVLGNKSAVTHFELPGSPLRVEAEHIARGGRDAALFGYTALMINRPEGLRKVTFGPAPKPATGA
SIO_010081: CHEID_RS10390
subclass of: SO_0000673
so part of: CHEID_RS10390
location: complement(7412..8980)
location: region:7412-8980:-1
so has part: feature:7412-8980:-1:exon

WP_181645943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7412-8980:-1:exon

CHEID_RS10395
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10395
old locus tag: CHEID_10555
so part of: sequence
location: complement(8984..9292)
location: region:8984-9292:-1
so has part: feature:8984-9292:-1:exon
subclass of: SO_0000010

position:8984:-1
position: 8984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9292:-1
position: 9292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8984-9292:-1:exon

CHEID_RS10395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10395
old locus tag: CHEID_10555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQPERLSNAPAVIRYPWRATLRTTIVAAIALLPLLPEIAEAANIDTVPAVVSFLTVTAAIQRVLAVPGVEKWLRNHTTFLSSTHPADQQADELDYVGKHRKD
SIO_010081: CHEID_RS10395
subclass of: SO_0000673
so part of: CHEID_RS10395
location: complement(8984..9292)
location: region:8984-9292:-1
so has part: feature:8984-9292:-1:exon

WP_146743887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8984-9292:-1:exon

CHEID_RS10400
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10400
old locus tag: CHEID_10560
so part of: sequence
location: complement(9374..10114)
location: region:9374-10114:-1
so has part: feature:9374-10114:-1:exon
subclass of: SO_0000010

position:9374:-1
position: 9374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10114:-1
position: 10114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9374-10114:-1:exon

CHEID_RS10400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10400
old locus tag: CHEID_10560
EC number: 3.5.1.28
inference: COORDINATES: protein motif:HMM:NF013661.2
GO function: GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO process: GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MLDWSPRFNFGNPRPLSAINHICIHVTVNSPGTPAENVAQYQIDSESGSYHMLVDTRLVVLKENTDDWQTWSAGPTSNRSGLHLSFVMRGTETREQWLAQDRMLRAGAQVCAEWARRYRIPVVKRSAGELRAGRGGFCGHVDTAQAWGETDHVDPGPGFPWDRFLAMVAEAQHPTPPKGDDDMTPEDRALLTETRDLCRFILAQLGGEKAPGQFGGWPQGGNRTMYDLLAATAARAGVPGTTDLKK
SIO_010081: CHEID_RS10400
subclass of: SO_0000673
so part of: CHEID_RS10400
location: complement(9374..10114)
location: region:9374-10114:-1
so has part: feature:9374-10114:-1:exon

WP_112769967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9374-10114:-1:exon

CHEID_RS10405
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10405
old locus tag: CHEID_10565
so part of: sequence
location: complement(10107..11183)
location: region:10107-11183:-1
so has part: feature:10107-11183:-1:exon
subclass of: SO_0000010

position:10107:-1
position: 10107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11183:-1
position: 11183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10107-11183:-1:exon

CHEID_RS10405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10405
old locus tag: CHEID_10565
inference: COORDINATES: protein motif:HMM:NF016732.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage portal protein
translation: MGITDSLRQWLALPYLAAQPYDAVPYESPWASPNHLLTITPPDAPRPVSRAMAMGVPAIARARRLIVGAIARCPLEARQDGKRAVRQPLWMVRTDGVASPVFRMTWTVDDLFFYGWSCWALERDASGAVIRADRIPYHLWDVDQDNRVIVQGQIVDPSDVCLIPGPDEGLLQTSAAAIRHAVQLQELATRYAETPAAQVLLKQTGGQPLTDAQRRALVESWADARRGKNGGVAFANQSIDVQELGKANTDLLIGGRNAAAVDIARAAGVPAMMIDAGTAGTGTITYSNAAARNVELIDYALAPYMAAIAARLGLDDVVPRGTAVAFDLTDLTSPTVGDLDVPDDDKPDHDTPQENGNA
SIO_010081: CHEID_RS10405
subclass of: SO_0000673
so part of: CHEID_RS10405
location: complement(10107..11183)
location: region:10107-11183:-1
so has part: feature:10107-11183:-1:exon

WP_112769968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10107-11183:-1:exon

CHEID_RS10410
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10410
old locus tag: CHEID_10570
so part of: sequence
location: complement(11252..11464)
location: region:11252-11464:-1
so has part: feature:11252-11464:-1:exon
subclass of: SO_0000010

position:11252:-1
position: 11252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11464:-1
position: 11464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11464:-1:exon

CHEID_RS10410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10410
old locus tag: CHEID_10570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTKKMTRRRADTSETTGTVISCPRCEQRTLETSDYAAWRWLALHLRRYHGDLHAASSAARHARRLAATD
SIO_010081: CHEID_RS10410
subclass of: SO_0000673
so part of: CHEID_RS10410
location: complement(11252..11464)
location: region:11252-11464:-1
so has part: feature:11252-11464:-1:exon

WP_112769969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11464:-1:exon

CHEID_RS10415
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10415
old locus tag: CHEID_10575
so part of: sequence
location: complement(11464..12867)
location: region:11464-12867:-1
so has part: feature:11464-12867:-1:exon
subclass of: SO_0000010

position:12867:-1
position: 12867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11464-12867:-1:exon

CHEID_RS10415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10415
old locus tag: CHEID_10575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: terminase
translation: MMSEAVPRFHTPRDYRRRTLGAKAAKLSAMMGRACMPWQRQALDVALEVDDRGRFHYKTVVITVPRQSGKTALVLAAGLHRTLITPNGKVWYTAQTGQIARERFLEDMAVDAERLLSPTVAVKRGAGDTRLIFPAIHSQFRPHPPTDTSLHSEQSDLNLIDEPWAFSEVQGDGLIQAIQPTQNTRPNAQTIYLSTMGDARSTWWHAIVDAARAAEDPHTAIIDWGLPEGHDPSDIEAVIRAHPAVGHTIEPETVRTAAGRMKPAEFARAYANVRTQTRVAVFSSDVLARVLTETATMAPAAEVAFGVATAFDRSISVIAAAGEAADGTPVCEIVDARPGTGWVADRLTELQRHHPRATLVDARSPASTIATDPALTEIISTPASAELAGGTGLFLDSINRAELRLRYDRDLARSFDGLTLKFVGDLGQMLDRKHSSGSIAHIEACLLAFTAIAQRPAPAPTPEIWTC
SIO_010081: CHEID_RS10415
subclass of: SO_0000673
so part of: CHEID_RS10415
location: complement(11464..12867)
location: region:11464-12867:-1
so has part: feature:11464-12867:-1:exon

WP_273661235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11464-12867:-1:exon

CHEID_RS10420
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10420
old locus tag: CHEID_10580
so part of: sequence
location: complement(12857..13282)
location: region:12857-13282:-1
so has part: feature:12857-13282:-1:exon
subclass of: SO_0000010

position:12857:-1
position: 12857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13282:-1
position: 13282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12857-13282:-1:exon

CHEID_RS10420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10420
old locus tag: CHEID_10580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPRQDPRTPGHGQAHLFDPPTTKDSQRLDGGRHSRAMAGALSAARDAGLIDRIDDGLATVLLAGAWELDSHEAQNQPYGPSKVIPAMVEGLREARMTPDSRQTQTEDKIAALIDDLAAADAADPAPAEDRAELRCFGGDDE
SIO_010081: CHEID_RS10420
subclass of: SO_0000673
so part of: CHEID_RS10420
location: complement(12857..13282)
location: region:12857-13282:-1
so has part: feature:12857-13282:-1:exon

WP_273661236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12857-13282:-1:exon

CHEID_RS10425
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10425
so part of: sequence
location: complement(13448..13627)
location: region:13448-13627:-1
so has part: feature:13448-13627:-1:exon
subclass of: SO_0000010

position:13448:-1
position: 13448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13627:-1
position: 13627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13448-13627:-1:exon

CHEID_RS10425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10425
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF013964.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MPGADSPDHVIPRAHGGTDDLANLRPAHRRCNSARRDMPLEQWRAAHPLPSRAPPSRRW
SIO_010081: CHEID_RS10425
subclass of: SO_0000673
so part of: CHEID_RS10425
location: complement(13448..13627)
location: region:13448-13627:-1
so has part: feature:13448-13627:-1:exon

WP_273661551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13448-13627:-1:exon

CHEID_RS10430
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10430
old locus tag: CHEID_10585
so part of: sequence
location: complement(13714..14007)
location: region:13714-14007:-1
so has part: feature:13714-14007:-1:exon
subclass of: SO_0000010

position:13714:-1
position: 13714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14007:-1
position: 14007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13714-14007:-1:exon

CHEID_RS10430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10430
old locus tag: CHEID_10585
inference: COORDINATES: protein motif:HMM:NF014520.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WhiB family transcriptional regulator
translation: MMIRPGTEWMDRAACHGVDAALIDASPTRGRNLGAIHRYAAELCRECPVQRECAADALATRAEGVIRAGVPVPERAGNKVRRRMAFTRLRAIAGVGP
SIO_010081: CHEID_RS10430
subclass of: SO_0000673
so part of: CHEID_RS10430
location: complement(13714..14007)
location: region:13714-14007:-1
so has part: feature:13714-14007:-1:exon

WP_112770385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13714-14007:-1:exon

CHEID_RS10435
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10435
old locus tag: CHEID_10595
so part of: sequence
location: complement(14156..14605)
location: region:14156-14605:-1
so has part: feature:14156-14605:-1:exon
subclass of: SO_0000010

position:14156:-1
position: 14156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14605:-1
position: 14605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14156-14605:-1:exon

CHEID_RS10435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10435
old locus tag: CHEID_10595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTHFPTIEEFTRQLAHMGIDPLWYDTESIARRITTSTAEGFTVELPRFDGGQEMTPLQAFWSACMDNARWPANHVDDVHLEEFARACLEDPSAVGTYAAMDAAEEIQEETDQYIDTEMMDDDDALEILGKLGRDRYGNTRPLAWSRA
SIO_010081: CHEID_RS10435
subclass of: SO_0000673
so part of: CHEID_RS10435
location: complement(14156..14605)
location: region:14156-14605:-1
so has part: feature:14156-14605:-1:exon

WP_146743929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14156-14605:-1:exon

CHEID_RS10440
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10440
old locus tag: CHEID_10600
so part of: sequence
location: complement(14992..15447)
location: region:14992-15447:-1
so has part: feature:14992-15447:-1:exon
subclass of: SO_0000010

position:14992:-1
position: 14992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15447:-1
position: 15447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14992-15447:-1:exon

CHEID_RS10440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10440
old locus tag: CHEID_10600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHPSKFPTVATSELSRVVTDWQRHAHAARAADSDDLAGIWEQCADTIQTVISAARKRQRTVMLARRAARETDKSFAKEYAALRELRKLAYQQENLSHTFRQAAETHAAAGRTEDAEAARECAADSEQRYERATAALEVLTSHMQQTTALV
SIO_010081: CHEID_RS10440
subclass of: SO_0000673
so part of: CHEID_RS10440
location: complement(14992..15447)
location: region:14992-15447:-1
so has part: feature:14992-15447:-1:exon

WP_112768873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14992-15447:-1:exon

CHEID_RS10445
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10445
old locus tag: CHEID_10605
so part of: sequence
location: complement(15444..15623)
location: region:15444-15623:-1
so has part: feature:15444-15623:-1:exon
subclass of: SO_0000010

position:15444:-1
position: 15444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15623:-1
position: 15623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15444-15623:-1:exon

CHEID_RS10445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10445
old locus tag: CHEID_10605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTHVLEPPRWLQRGTIALSMSALLGGAFYLPGPRTAILLAAASLGALAFEAASRGDDE
SIO_010081: CHEID_RS10445
subclass of: SO_0000673
so part of: CHEID_RS10445
location: complement(15444..15623)
location: region:15444-15623:-1
so has part: feature:15444-15623:-1:exon

WP_112768874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15444-15623:-1:exon

CHEID_RS10450
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10450
old locus tag: CHEID_10610
so part of: sequence
location: complement(15717..16085)
location: region:15717-16085:-1
so has part: feature:15717-16085:-1:exon
subclass of: SO_0000010

position:15717:-1
position: 15717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16085:-1
position: 16085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15717-16085:-1:exon

CHEID_RS10450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10450
old locus tag: CHEID_10610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDDSPRYPVSVDELSDLIAENLREKLSRERPASKAPEDRALLLTFDGVAFADDPDNILIPGDLILAPAKITNPYSGGIYEIELRLTTNVEPVIGEGLEISRDREQHRQYREVRAKAGRSGR
SIO_010081: CHEID_RS10450
subclass of: SO_0000673
so part of: CHEID_RS10450
location: complement(15717..16085)
location: region:15717-16085:-1
so has part: feature:15717-16085:-1:exon

WP_112768875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15717-16085:-1:exon

CHEID_RS10455
type: Gene
subclass of: SO_0000704
RO_0002162: 2055947
locus tag: CHEID_RS10455
old locus tag: CHEID_10615
so part of: sequence
location: 16143..16298
location: region:16143-16298:1
so has part: feature:16143-16298:1:exon
subclass of: SO_0000010

position:16143:1
position: 16143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16298:1
position: 16298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16143-16298:1:exon

CHEID_RS10455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2055947
locus tag: CHEID_RS10455
old locus tag: CHEID_10615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNQNWGDIPKDQKWEDVNPKQTYKDLEDQDVDTSKPRDVIECWMDEDDNE
SIO_010081: CHEID_RS10455
subclass of: SO_0000673
so part of: CHEID_RS10455
location: 16143..16298
location: region:16143-16298:1
so has part: feature:16143-16298:1:exon

WP_273661238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16143-16298:1:exon