Rubrobacter indicoceani strain SCSIO 08198 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Rubrobacteria; Rubrobacterales; Rubrobacteraceae; Rubrobacter.
Whole genome sequence of Indioceanicola profundi
Submitted (18-JUL-2018) 164, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Chinese Academy of Sciences, Guangzhou 510301, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031117.1.\nBacteria and source DNA available from Xin-Peng Tian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. V0.3.0; proovread v. 2.12;\n Celera Assembler v. 8.3; SMRT Analysis v.\n V2.3.0; GATK v. V1.6-13\nExpected Final Version :: yes\nGenome Coverage :: 444.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/21/2023 02:09:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,085\nCDSs (total) :: 3,033\nGenes (coding) :: 3,017\nCDSs (with protein) :: 3,017\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 16\nCDSs (without protein) :: 16\nPseudo Genes (ambiguous residues) :: 0 of 16\nPseudo Genes (frameshifted) :: 2 of 16\nPseudo Genes (incomplete) :: 12 of 16\nPseudo Genes (internal stop) :: 2 of 16\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR01893.1
GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028222.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008830795.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_015748627.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013426582.1
COORDINATES: protein motif:HMM:NF024799.2
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012235.2
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_011564053.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013496048.1
COORDINATES: similar to AA sequence:RefSeq:WP_015748631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560678.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_015922159.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013765236.1
COORDINATES: protein motif:HMM:TIGR00711.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF021886.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015655788.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017755082.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013074429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018333013.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020501867.1
carboxyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011460272.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011557464.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564678.1
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF012589.2
COORDINATES: similar to AA sequence:RefSeq:WP_012873544.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF016114.2
COORDINATES: protein motif:HMM:NF025065.2
COORDINATES: similar to AA sequence:RefSeq:WP_017954783.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497166.1
COORDINATES: protein motif:HMM:NF012455.2
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017652.2
3-keto-5-aminohexanoate cleavage protein