Methylobacterium currus strain PR1016A plasmid unnamed3.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Submitted (04-APR-2018) Laboratory of Molecular Environmental Microbiology, Korea university, Anam-ro, Seoul 02841, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP028847.1.\nBacteria and source DNA available from Woojun Park, Department of\nEnvironmental Science and Ecological Engineering. Korea University\nAnam-Dong, Seungbuk-Ku, Seoul 02841, Republic of Korea.\nGenome assembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 93.64x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:26:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,243\nCDSs (total) :: 7,112\nGenes (coding) :: 6,899\nCDSs (with protein) :: 6,899\nGenes (RNA) :: 131\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 213\nCDSs (without protein) :: 213\nPseudo Genes (ambiguous residues) :: 0 of 213\nPseudo Genes (frameshifted) :: 82 of 213\nPseudo Genes (incomplete) :: 161 of 213\nPseudo Genes (internal stop) :: 33 of 213\nPseudo Genes (multiple problems) :: 56 of 213\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF013700.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019573362.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091270.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606450.1
COORDINATES: similar to AA sequence:RefSeq:WP_010687692.1
COORDINATES: similar to AA sequence:RefSeq:WP_020095960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018264083.1
COORDINATES: similar to AA sequence:RefSeq:WP_018264021.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012335929.1
COORDINATES: similar to AA sequence:RefSeq:WP_012335928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606453.1
COORDINATES: protein motif:HMM:NF037331.2
Gp138 family membrane-puncturing spike protein
COORDINATES: similar to AA sequence:RefSeq:WP_014236452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333156.1
COORDINATES: similar to AA sequence:RefSeq:WP_018264067.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927608.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273341.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_002965506.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024547.2
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: similar to AA sequence:RefSeq:WP_012330780.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391065.1
COORDINATES: similar to AA sequence:RefSeq:WP_017133256.1