Methylobacterium currus strain PR1016A plasmid unnamed1.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Submitted (04-APR-2018) Laboratory of Molecular Environmental Microbiology, Korea university, Anam-ro, Seoul 02841, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP028845.1.\nBacteria and source DNA available from Woojun Park, Department of\nEnvironmental Science and Ecological Engineering. Korea University\nAnam-Dong, Seungbuk-Ku, Seoul 02841, Republic of Korea.\nGenome assembly not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 93.64x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:26:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,243\nCDSs (total) :: 7,112\nGenes (coding) :: 6,899\nCDSs (with protein) :: 6,899\nGenes (RNA) :: 131\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 4\nPseudo Genes (total) :: 213\nCDSs (without protein) :: 213\nPseudo Genes (ambiguous residues) :: 0 of 213\nPseudo Genes (frameshifted) :: 82 of 213\nPseudo Genes (incomplete) :: 161 of 213\nPseudo Genes (internal stop) :: 33 of 213\nPseudo Genes (multiple problems) :: 56 of 213\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_007557641.1
frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003598658.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012973088.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1380-like element ISMpo3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007564030.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631076.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611965.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012333161.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: similar to AA sequence:RefSeq:WP_010667356.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665990.1
COORDINATES: similar to AA sequence:RefSeq:WP_009210098.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995943.1
COORDINATES: similar to AA sequence:RefSeq:WP_010164982.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010164983.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019998550.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694720.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012652902.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336512.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009450361.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003563307.1
COORDINATES: similar to AA sequence:RefSeq:WP_018083305.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: protein motif:HMM:NF039997.1
COORDINATES: similar to AA sequence:RefSeq:WP_041371609.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018261137.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015930554.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012778771.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04416.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_003602200.1
IS21-like element ISMex13 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_003602196.1
IS21-like element ISMex13 family transposase
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_015824273.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_076611382.1
COORDINATES: protein motif:HMM:NF017497.2
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_043766072.1
COORDINATES: similar to AA sequence:RefSeq:WP_043766075.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004152394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006961684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011758229.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_019460886.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779117.1
COORDINATES: similar to AA sequence:RefSeq:WP_018260476.1
COORDINATES: protein motif:HMM:NF040354.1
COORDINATES: similar to AA sequence:RefSeq:WP_019906650.1
COORDINATES: similar to AA sequence:RefSeq:WP_007569223.1
COORDINATES: similar to AA sequence:RefSeq:WP_019904096.1
COORDINATES: similar to AA sequence:RefSeq:WP_018043778.1
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF012551.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: similar to AA sequence:RefSeq:WP_012778766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606243.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431021.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930247.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932070.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329044.1
COORDINATES: protein motif:HMM:NF018050.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015932523.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011982979.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836235.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012338166.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338165.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_012290097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016509639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331762.1
COORDINATES: similar to AA sequence:RefSeq:WP_013115599.1
COORDINATES: similar to AA sequence:RefSeq:WP_019013311.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762874.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612228.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761918.1
COORDINATES: similar to AA sequence:RefSeq:WP_007567355.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015216.2
GO:0018836 - alkylmercury lyase activity [Evidence IEA]
GO:0046413 - organomercury catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012752963.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008890419.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_012752962.1
COORDINATES: protein motif:HMM:NF014465.2
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009337764.1
COORDINATES: similar to AA sequence:RefSeq:WP_009209172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340188.1
COORDINATES: similar to AA sequence:RefSeq:WP_007602803.1
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009866213.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012752954.1
COORDINATES: similar to AA sequence:RefSeq:WP_008946218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558556.1
COORDINATES: similar to AA sequence:RefSeq:WP_017482494.1
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: similar to AA sequence:RefSeq:WP_003606573.1
COORDINATES: similar to AA sequence:RefSeq:WP_015824338.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558564.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017482498.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012753460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012290073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012752986.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007002974.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007353990.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007557639.1
COORDINATES: protein motif:HMM:NF028308.2
COORDINATES: similar to AA sequence:RefSeq:WP_012752981.1
COORDINATES: similar to AA sequence:RefSeq:WP_012752979.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012752978.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012455883.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012452059.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611352.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611412.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019024.2
GO:0048027 - mRNA 5'-UTR binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:1902209 - negative regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: protein motif:HMM:NF012903.2
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015933245.1
frameshifted; incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.