Natrarchaeobaculum sulfurireducens strain AArc1 plasmid pAArc1-02, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrarchaeobaculum.
Phenotypic and genomic properties of facultatively anaerobic sulfur-reducing natronoarchaea from hypersaline soda lakes
Submitted (17-OCT-2017) Marine Molecular Microbiology & Biotech, C.N.R. - Institute for Coastal Marine Environment (IAMC), Spianata S. Raineri, 86, Messina 98122, Italy
REFSEQ INFORMATION: The reference sequence is identical to\nCP024046.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2017\nAssembly Method :: Velvet v. 1.2.10; SPAdes v. 3.7.1;\n Geneious v. 7.1.9\nExpected Final Version :: yes\nGenome Coverage :: 129.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:43:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,740\nCDSs (total) :: 3,678\nGenes (coding) :: 3,614\nCDSs (with protein) :: 3,614\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 27 of 64\nPseudo Genes (incomplete) :: 51 of 64\nPseudo Genes (internal stop) :: 11 of 64\nPseudo Genes (multiple problems) :: 21 of 64\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Natronolimnobius sulfurireducens
COORDINATES: similar to AA sequence:RefSeq:WP_006652796.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008894978.1
COORDINATES: protein motif:HMM:NF028237.2
COORDINATES: protein motif:HMM:NF024753.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067068.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006088672.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015911530.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267697.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343936.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199611.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414229.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233736.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015233322.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008584034.1
COORDINATES: similar to AA sequence:RefSeq:WP_012942915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007704496.1
COORDINATES: similar to AA sequence:RefSeq:WP_007704498.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524295.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524294.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF022995.2
COORDINATES: similar to AA sequence:RefSeq:WP_006885277.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004067934.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258958.1
COORDINATES: protein motif:HMM:NF024804.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015790189.1
COORDINATES: similar to AA sequence:RefSeq:WP_005580531.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005559847.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006067109.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011223250.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453948.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267580.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737464.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040628.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038771.1
COORDINATES: protein motif:HMM:NF040120.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182386.1
COORDINATES: similar to AA sequence:RefSeq:WP_008001518.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267457.1
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006666409.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557377.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014051116.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088754.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006826513.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432352.1
COORDINATES: similar to AA sequence:RefSeq:WP_006110281.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006649874.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649870.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008426931.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_008416485.1
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008365991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414327.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015408823.1
COORDINATES: protein motif:HMM:NF014564.2
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006091277.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555624.1
COORDINATES: similar to AA sequence:RefSeq:WP_008163855.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008162209.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006089752.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007261071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011223724.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006600164.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015107.1
COORDINATES: similar to AA sequence:RefSeq:WP_011224972.1
COORDINATES: similar to AA sequence:RefSeq:WP_006665112.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006067207.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164844.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007142330.1
COORDINATES: similar to AA sequence:RefSeq:WP_004046990.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184469.1
COORDINATES: similar to AA sequence:RefSeq:WP_006664327.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216122.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189034.1
COORDINATES: protein motif:HMM:NF005559.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004965093.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091824.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981503.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526453.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015233567.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_015233566.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_008528089.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_015233564.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00074.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: protein motif:HMM:TIGR00072.1
COORDINATES: protein motif:HMM:NF013460.2
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF012592.2
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: protein motif:HMM:NF013242.2
COORDINATES: similar to AA sequence:RefSeq:WP_006064694.1
COORDINATES: similar to AA sequence:RefSeq:WP_005581707.1
COORDINATES: similar to AA sequence:RefSeq:WP_005581705.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376759.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893516.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217463.1
COORDINATES: protein motif:HMM:NF024248.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035025.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04088.1
SipW-dependent-type signal peptide-containing protein
COORDINATES: protein motif:HMM:TIGR02228.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017341863.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048764.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367451.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006671274.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_007140036.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046337.1