Natrarchaeobaculum sulfurireducens strain AArc1 plasmid pAArc1-01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrarchaeobaculum.
Phenotypic and genomic properties of facultatively anaerobic sulfur-reducing natronoarchaea from hypersaline soda lakes
Submitted (17-OCT-2017) Marine Molecular Microbiology & Biotech, C.N.R. - Institute for Coastal Marine Environment (IAMC), Spianata S. Raineri, 86, Messina 98122, Italy
REFSEQ INFORMATION: The reference sequence is identical to\nCP024045.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2017\nAssembly Method :: Velvet v. 1.2.10; SPAdes v. 3.7.1;\n Geneious v. 7.1.9\nExpected Final Version :: yes\nGenome Coverage :: 129.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 03:43:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,740\nCDSs (total) :: 3,678\nGenes (coding) :: 3,614\nCDSs (with protein) :: 3,614\nGenes (RNA) :: 62\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 27 of 64\nPseudo Genes (incomplete) :: 51 of 64\nPseudo Genes (internal stop) :: 11 of 64\nPseudo Genes (multiple problems) :: 21 of 64\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Natronolimnobius sulfurireducens
COORDINATES: similar to AA sequence:RefSeq:WP_006183554.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538724.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093004.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015302104.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886087.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007258717.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222177.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258720.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258721.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762218.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660267.1
COORDINATES: similar to AA sequence:RefSeq:WP_005046337.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651346.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446236.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651341.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651340.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651338.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825372.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183560.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_005040628.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038771.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006651329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180168.1
COORDINATES: similar to AA sequence:RefSeq:WP_008420616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736773.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_006066882.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667353.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065495.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006091191.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004052020.1
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: similar to AA sequence:RefSeq:WP_007538666.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538669.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660081.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660080.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538671.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660078.1
COORDINATES: protein motif:HMM:NF013488.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008442061.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233736.1
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_007143101.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881844.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013881847.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015202.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881832.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143114.1