Rhizobium tumorigenes strain 1078 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomics of the tumorigenes clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov
Rhizobium tumorigenes sp. nov., a novel plant tumorigenic bacterium isolated from cane gall tumors on thornless blackberry
Submitted (02-FEB-2023) Institute for Plant Protection in Horticulture and Urban Green, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), Messeweg 11-12, Braunschweig 38104, Germany
Submitted (28-SEP-2017) AG Smalla, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP117260.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. RS_HGAP_Assembly.3 protocol\n included in SMRT Portal version 2.3.0\n using default parameters\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 329x\nSequencing Technology :: PacBio RSII and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 11:48:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,658\nCDSs (total) :: 5,589\nGenes (coding) :: 5,424\nCDSs (with protein) :: 5,424\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 165\nCDSs (without protein) :: 165\nPseudo Genes (ambiguous residues) :: 0 of 165\nPseudo Genes (frameshifted) :: 79 of 165\nPseudo Genes (incomplete) :: 126 of 165\nPseudo Genes (internal stop) :: 32 of 165\nPseudo Genes (multiple problems) :: 58 of 165\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015932299.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011992912.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489922.1
COORDINATES: similar to AA sequence:RefSeq:WP_003528602.1
dihydrodipicolinate synthase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_017969166.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018096762.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649992.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572011.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012560000.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017997162.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003576433.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002724275.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694839.1
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007694841.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901766.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011909060.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008228351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694847.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901760.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568623.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007695203.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007695206.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011650249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815536.1
COORDINATES: similar to AA sequence:RefSeq:WP_017254189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011443155.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
tetratricopeptide repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015339114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003545057.1
COORDINATES: similar to AA sequence:RefSeq:WP_008531329.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006725088.1
COORDINATES: similar to AA sequence:RefSeq:WP_004106863.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_004623388.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004623386.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007874844.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006274668.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013896663.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017272518.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_014332596.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018012358.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014530060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006728238.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010976341.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008535392.1
COORDINATES: similar to AA sequence:RefSeq:WP_007628412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345619.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390251.1
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390252.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006612904.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930900.1
COORDINATES: similar to AA sequence:RefSeq:WP_015942216.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528147.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129562.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007822150.1
COORDINATES: similar to AA sequence:RefSeq:WP_007820915.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007698015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246492.1
COORDINATES: similar to AA sequence:RefSeq:WP_003574686.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343031.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557618.1
COORDINATES: similar to AA sequence:RefSeq:WP_020049848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011425323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069623.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445421.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530236.1
COORDINATES: similar to AA sequence:RefSeq:WP_003579142.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003510737.1
COORDINATES: similar to AA sequence:RefSeq:WP_007535207.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006725060.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_012758489.1
DUF2161 family putative PD-(D/E)XK-type phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_008829940.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012650206.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017737606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538345.1
COORDINATES: similar to AA sequence:RefSeq:WP_017132291.1
COORDINATES: similar to AA sequence:RefSeq:WP_004441915.1
GO:0018467 - formaldehyde dehydrogenase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
formaldehyde dehydrogenase, glutathione-independent
COORDINATES: similar to AA sequence:RefSeq:WP_016737143.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287208.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568473.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018324428.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019565910.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF018652.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020186437.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014647773.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_019998257.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019998256.1
GO:0055051 - ATP-binding cassette (ABC) transporter complex, integrated substrate binding [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033230 - ABC-type cysteine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0033228 - cysteine export across plasma membrane [Evidence IEA]
thiol reductant ABC exporter subunit CydD
COORDINATES: similar to AA sequence:RefSeq:WP_019998255.1
thiol reductant ABC exporter subunit CydC
COORDINATES: similar to AA sequence:RefSeq:WP_007689302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424362.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006201221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427775.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654420.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634472.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003577779.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047854.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572268.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529987.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427767.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538478.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008876771.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568363.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491719.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015917783.1
COORDINATES: similar to AA sequence:RefSeq:WP_012318132.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067744.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067743.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691264.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653891.1
COORDINATES: similar to AA sequence:RefSeq:WP_018185470.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003517420.1
COORDINATES: protein motif:HMM:NF014305.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_017992253.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760468.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013637234.1
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013649155.1
COORDINATES: similar to AA sequence:RefSeq:WP_004713728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004707080.1
COORDINATES: similar to AA sequence:RefSeq:WP_002209280.1
COORDINATES: protein motif:HMM:NF020039.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015343767.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654074.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018116761.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792314.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019566405.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203926.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015917909.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006311978.1
COORDINATES: similar to AA sequence:RefSeq:WP_003509624.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098080.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653692.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517689.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611391.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020009889.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479684.1
GO:0061077 - chaperone-mediated protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: similar to AA sequence:RefSeq:WP_006311363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694105.1
COORDINATES: similar to AA sequence:RefSeq:WP_015840887.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694107.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012650091.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012650092.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537209.1
curli-like amyloid fiber formation chaperone CsgH
COORDINATES: similar to AA sequence:RefSeq:WP_003505758.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342519.1
COORDINATES: protein motif:HMM:NF012589.2
COORDINATES: protein motif:HMM:NF020132.2
COORDINATES: similar to AA sequence:RefSeq:WP_006159185.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497070.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483318.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483320.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497074.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483322.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483323.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018245298.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245297.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653678.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653679.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007596545.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014133054.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917686.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012440227.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596554.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897721.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007689308.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012649300.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012649301.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: similar to AA sequence:RefSeq:WP_013641141.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051026.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873025.1
COORDINATES: similar to AA sequence:RefSeq:WP_014376278.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247094.1
COORDINATES: similar to AA sequence:RefSeq:WP_007593068.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018506 - maleylacetate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016781285.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124608.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020145560.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424683.1
COORDINATES: similar to AA sequence:RefSeq:WP_018226137.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003522998.1
COORDINATES: similar to AA sequence:RefSeq:WP_007631870.1
COORDINATES: similar to AA sequence:RefSeq:WP_011653595.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590169.1
COORDINATES: similar to AA sequence:RefSeq:WP_012756584.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_003591521.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_004124287.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007689425.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007689427.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007689429.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654135.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758851.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_018042919.1
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653697.1
COORDINATES: similar to AA sequence:RefSeq:WP_019857727.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010915722.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603193.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653693.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996936.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017957331.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015273565.1
nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014490306.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653853.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015914715.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575794.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237526.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003562887.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755405.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840186.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649388.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007797268.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016735884.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011649380.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914527.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019564739.1
COORDINATES: similar to AA sequence:RefSeq:WP_020011981.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332304.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894053.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269930.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533556.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445089.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010973020.1
COORDINATES: similar to AA sequence:RefSeq:WP_003539974.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693607.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896561.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018899796.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556358.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873496.1
COORDINATES: similar to AA sequence:RefSeq:WP_020176114.1
COORDINATES: similar to AA sequence:RefSeq:WP_004417152.1