Rhizobium tumorigenes strain 1078 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomics of the tumorigenes clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov
Rhizobium tumorigenes sp. nov., a novel plant tumorigenic bacterium isolated from cane gall tumors on thornless blackberry
Submitted (02-FEB-2023) Institute for Plant Protection in Horticulture and Urban Green, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), Messeweg 11-12, Braunschweig 38104, Germany
Submitted (28-SEP-2017) AG Smalla, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP117258.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. RS_HGAP_Assembly.3 protocol\n included in SMRT Portal version 2.3.0\n using default parameters\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 329x\nSequencing Technology :: PacBio RSII and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 11:48:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,658\nCDSs (total) :: 5,589\nGenes (coding) :: 5,424\nCDSs (with protein) :: 5,424\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 165\nCDSs (without protein) :: 165\nPseudo Genes (ambiguous residues) :: 0 of 165\nPseudo Genes (frameshifted) :: 79 of 165\nPseudo Genes (incomplete) :: 126 of 165\nPseudo Genes (internal stop) :: 32 of 165\nPseudo Genes (multiple problems) :: 58 of 165\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017997287.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014330296.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489922.1
COORDINATES: similar to AA sequence:RefSeq:WP_020562754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007631379.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703310.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051513.1
GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020486256.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002731029.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800376.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007814681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012558831.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017275762.1
COORDINATES: protein motif:HMM:NF024649.2
COORDINATES: similar to AA sequence:RefSeq:WP_008936512.1
COORDINATES: similar to AA sequence:RefSeq:WP_007788837.1
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: protein motif:HMM:NF017717.2
COORDINATES: similar to AA sequence:RefSeq:WP_014529258.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018238708.1
GO:0016020 - membrane [Evidence IEA]; GO:0042597 - periplasmic space [Evidence IEA]
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017956922.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017956921.1
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_012654295.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_003592311.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system protein TssL, long form
COORDINATES: similar to AA sequence:RefSeq:WP_017956918.1
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF012708.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018238715.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_003575663.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_020810662.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_017956913.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_017956912.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012654304.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973761.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003592328.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575676.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575677.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_003575679.1
COORDINATES: protein motif:HMM:NF037816.2
COORDINATES: protein motif:HMM:NF036906.2
contact-dependent growth inhibition system immunity protein
COORDINATES: similar to AA sequence:RefSeq:WP_017956905.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF025768.2
COORDINATES: similar to AA sequence:RefSeq:WP_017956902.1
GO:0042546 - cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF025918.2
COORDINATES: similar to AA sequence:RefSeq:WP_003575687.1
COORDINATES: similar to AA sequence:RefSeq:WP_015916409.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: protein motif:HMM:NF026942.2
polymorphic toxin type 15 domain-containing protein
COORDINATES: protein motif:HMM:NF020461.2
COORDINATES: protein motif:HMM:NF020480.2
COORDINATES: protein motif:HMM:NF023304.2
COORDINATES: similar to AA sequence:RefSeq:WP_007701891.1
invasion associated locus B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007701893.1
GO:0046930 - pore complex [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
GO:0006811 - monoatomic ion transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341714.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246569.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
IS3-like element ISAtu5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013067097.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024739.2
COORDINATES: similar to AA sequence:RefSeq:WP_007831730.1
GO:0050194 - phosphonoacetaldehyde hydrolase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006202167.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
TIGR03364 family FAD-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013531868.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015317681.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003590973.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003575466.1
COORDINATES: protein motif:HMM:NF022603.2
COORDINATES: similar to AA sequence:RefSeq:WP_018899565.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967415.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_017969024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007404819.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018897649.1
COORDINATES: similar to AA sequence:RefSeq:WP_003529664.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015007989.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_013837013.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991317.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635038.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006311644.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012650280.1
COORDINATES: similar to AA sequence:RefSeq:WP_018425973.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019404093.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019861505.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115288.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003504408.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018182731.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006338703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006338701.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007893093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008107152.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007694822.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003546011.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007893100.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008530295.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003525694.1
NAD/NADP-dependent octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008994508.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003581668.1
COORDINATES: similar to AA sequence:RefSeq:WP_003581667.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_003530948.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007690842.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012558626.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938748.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992544.1
COORDINATES: similar to AA sequence:RefSeq:WP_019963874.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016733745.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017968441.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010973438.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489433.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124393.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124390.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321501.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110878.1
COORDINATES: similar to AA sequence:RefSeq:WP_017990654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797321.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: similar to AA sequence:RefSeq:WP_010502718.1
COORDINATES: similar to AA sequence:RefSeq:WP_011355998.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666679.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013341706.1
COORDINATES: similar to AA sequence:RefSeq:WP_017638839.1
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF024985.2
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: similar to AA sequence:RefSeq:WP_017995286.1
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010914675.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015917898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702446.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702443.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873999.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015917900.1
COORDINATES: similar to AA sequence:RefSeq:WP_013532944.1
COORDINATES: similar to AA sequence:RefSeq:WP_013532943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342408.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206430.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702415.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917906.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_007633072.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017959130.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017959129.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007633081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901166.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003513192.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007699608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342365.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342366.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649747.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003589205.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855332.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701784.1
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: similar to AA sequence:RefSeq:WP_007823700.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018116613.1
COORDINATES: similar to AA sequence:RefSeq:WP_012067189.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116615.1
COORDINATES: similar to AA sequence:RefSeq:WP_003047712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209297.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008891422.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342997.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009339329.1
COORDINATES: similar to AA sequence:RefSeq:WP_018900226.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_011427846.1
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006337137.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530119.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093205.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003499958.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245823.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481987.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318190.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481989.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444948.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018481980.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015241402.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481982.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529213.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481984.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018481985.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018326444.1
COORDINATES: similar to AA sequence:RefSeq:WP_013946712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496012.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047208.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342422.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996342.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006313421.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532267.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690226.1
GO:0009279 - cell outer membrane [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF024591.2
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_010160671.1
COORDINATES: similar to AA sequence:RefSeq:WP_010404064.1
sensor domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_003594756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694360.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011653928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694364.1
COORDINATES: similar to AA sequence:RefSeq:WP_003499575.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543699.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012759399.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543702.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242758.1
COORDINATES: similar to AA sequence:RefSeq:WP_018265641.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018265640.1
COORDINATES: similar to AA sequence:RefSeq:WP_008386884.1
COORDINATES: similar to AA sequence:RefSeq:WP_009027762.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF015013.2
COORDINATES: similar to AA sequence:RefSeq:WP_008963034.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008973775.1
COORDINATES: protein motif:HMM:NF025179.2
exopolysaccharide transport family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012383843.1
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_007627529.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018071104.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898030.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_018448527.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_011655123.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_003594574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007598013.1
COORDINATES: similar to AA sequence:RefSeq:WP_012115346.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007598457.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011581280.1
COORDINATES: similar to AA sequence:RefSeq:WP_019655825.1
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_012115341.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011157174.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015339114.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505546.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762391.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004431084.1
COORDINATES: similar to AA sequence:RefSeq:WP_015915978.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762395.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013635535.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332498.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017503191.1
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018901739.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007689176.1
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: similar to AA sequence:RefSeq:WP_007533892.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791359.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115040.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020050575.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_003531522.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449011.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007003269.1
COORDINATES: similar to AA sequence:RefSeq:WP_007881515.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017199486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010987893.1
COORDINATES: similar to AA sequence:RefSeq:WP_007762753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812223.1
COORDINATES: similar to AA sequence:RefSeq:WP_020572195.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003519742.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549533.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549532.1
COORDINATES: similar to AA sequence:RefSeq:WP_009464529.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637176.1
COORDINATES: similar to AA sequence:RefSeq:WP_018854682.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_018271046.1
COORDINATES: similar to AA sequence:RefSeq:WP_018271192.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105366.1
COORDINATES: similar to AA sequence:RefSeq:WP_008966086.1
COORDINATES: similar to AA sequence:RefSeq:WP_018316981.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760541.1
COORDINATES: protein motif:HMM:NF018264.2
COORDINATES: similar to AA sequence:RefSeq:WP_010217705.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: similar to AA sequence:RefSeq:WP_010909319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010188523.1
COORDINATES: similar to AA sequence:RefSeq:WP_020096165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831034.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008831035.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008041916.1
COORDINATES: similar to AA sequence:RefSeq:WP_019938900.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517088.1
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
SfnB family sulfur acquisition oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003591666.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736897.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676711.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003591660.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014329475.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484267.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015241964.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531212.1
COORDINATES: similar to AA sequence:RefSeq:WP_012061389.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012061390.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565720.1
COORDINATES: similar to AA sequence:RefSeq:WP_013639681.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334641.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334643.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334645.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245377.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689187.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446029.1
tellurite resistance TerB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010684969.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017980102.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134682.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827550.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020628928.1
COORDINATES: similar to AA sequence:RefSeq:WP_010910409.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201367.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480358.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855446.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855447.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855448.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562388.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674649.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018855451.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011648931.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550271.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018496130.1
putative urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018325817.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537234.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518374.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496126.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735458.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004112144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706454.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017968641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760695.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_003576343.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760697.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018899852.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899851.1
GO:0004328 - formamidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018486132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706460.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654375.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016735446.1
COORDINATES: similar to AA sequence:RefSeq:WP_019821106.1