Rhizobium tumorigenes strain 1078 plasmid pTi1078, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomics of the tumorigenes clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov
Rhizobium tumorigenes sp. nov., a novel plant tumorigenic bacterium isolated from cane gall tumors on thornless blackberry
Submitted (02-FEB-2023) Institute for Plant Protection in Horticulture and Urban Green, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), Messeweg 11-12, Braunschweig 38104, Germany
Submitted (28-SEP-2017) AG Smalla, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP117257.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: HGAP v. RS_HGAP_Assembly.3 protocol\n included in SMRT Portal version 2.3.0\n using default parameters\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 329x\nSequencing Technology :: PacBio RSII and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 11:48:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,658\nCDSs (total) :: 5,589\nGenes (coding) :: 5,424\nCDSs (with protein) :: 5,424\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 165\nCDSs (without protein) :: 165\nPseudo Genes (ambiguous residues) :: 0 of 165\nPseudo Genes (frameshifted) :: 79 of 165\nPseudo Genes (incomplete) :: 126 of 165\nPseudo Genes (internal stop) :: 32 of 165\nPseudo Genes (multiple problems) :: 58 of 165\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012559808.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012559809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489922.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013849885.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982979.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000442373.1
DfrB family trimethoprim-resistant dihydrofolate reductase
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007692973.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007692966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007692965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241889.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007673281.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019702069.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020702691.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017265310.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008873506.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008873507.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558284.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330273.1
COORDINATES: similar to AA sequence:RefSeq:WP_011797820.1
COORDINATES: similar to AA sequence:RefSeq:WP_018416051.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048329.1
MAE_28990/MAE_18760 family HEPN-like nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_007926561.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012288749.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011425250.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977638.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018427044.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653422.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653421.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012653420.1
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012653419.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_012653418.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653417.1
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_012653416.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA
COORDINATES: similar to AA sequence:RefSeq:WP_012653415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008028905.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653413.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653412.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011810924.1
COORDINATES: protein motif:HMM:TIGR01733.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653410.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653409.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653407.1
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012653406.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653405.1
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006310239.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494858.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006472565.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007757264.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341951.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013984772.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046815.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046816.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006316600.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046818.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006311633.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006311634.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020046821.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007703013.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518435.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006315297.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315298.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518438.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_020046837.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_003523837.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523838.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_012654909.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020046841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974898.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523843.1
COORDINATES: similar to AA sequence:RefSeq:WP_010892516.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_046205714.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017835.2
AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012654946.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654921.1
GO:0004645 - 1,4-alpha-oligoglucan phosphorylase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523851.1
GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974787.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003523853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007819484.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974903.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974904.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523858.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523859.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003523860.1
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538683.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012649019.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427370.1
The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems.; The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016608.2
COORDINATES: similar to AA sequence:RefSeq:WP_010891482.1
in Agrobacterium tumefaciens plasmid Ti this protein binds VirE2; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018885.2
COORDINATES: protein motif:HMM:NF018377.2
COORDINATES: similar to AA sequence:RefSeq:WP_018240406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328216.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406116.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913874.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769536.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612156.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010974821.1
COORDINATES: protein motif:HMM:NF014125.2
COORDINATES: similar to AA sequence:RefSeq:WP_010892363.1
COORDINATES: similar to AA sequence:RefSeq:WP_040132230.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649069.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653035.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974826.1
NAD/NADP-dependent octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010891456.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891455.1
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003523881.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974827.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523884.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891452.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974828.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654954.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012654955.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523894.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891638.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891637.1
nopaline ABC transporter substrate-binding protein NocT
COORDINATES: similar to AA sequence:RefSeq:WP_010974830.1
nopaline ABC transporter ATP-binding protein NocP
COORDINATES: similar to AA sequence:RefSeq:WP_003523901.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046771.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_076611292.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_018482044.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011084518.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009489154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017286974.1
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_010974915.1
type IV secretion system lytic transglycosylase VirB1
COORDINATES: similar to AA sequence:RefSeq:WP_010891502.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974916.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_010892491.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537089.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891497.1
type IV secretion system lipoprotein VirB7
COORDINATES: similar to AA sequence:RefSeq:WP_019856525.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537095.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_010891494.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974918.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010891492.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488279.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488280.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891489.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974919.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974920.1
The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011983014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989558.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006237746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013133790.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010891505.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
COORDINATES: similar to AA sequence:RefSeq:WP_016849023.1
COORDINATES: similar to AA sequence:RefSeq:WP_017726737.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612018.1
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_004112894.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653163.1
COORDINATES: similar to AA sequence:RefSeq:WP_007602188.1
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_017270750.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129019.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611435.1
COORDINATES: similar to AA sequence:RefSeq:WP_018083490.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011426223.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006205292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477286.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313958.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019859983.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094459.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875350.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807921.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420792.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_018272693.1
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_012976683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649012.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974825.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012881228.1
COORDINATES: similar to AA sequence:RefSeq:WP_013395907.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591714.1
COORDINATES: similar to AA sequence:RefSeq:WP_007674248.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483346.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112820.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240805.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328334.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571621.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048832.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452917.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF020251.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653146.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653145.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517299.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007677454.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_006047390.1
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF012335.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012092304.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649007.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649006.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269019.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649004.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012648997.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648996.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648995.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648994.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648992.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006199609.1
COORDINATES: protein motif:HMM:NF033538.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648987.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012648986.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012648985.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648983.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539334.1
IS21-like element ISRel16 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555941.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019149.2
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611129.1
COORDINATES: similar to AA sequence:RefSeq:WP_008554466.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611226.1
COORDINATES: similar to AA sequence:RefSeq:WP_003521946.1
COORDINATES: protein motif:HMM:NF015397.2
COORDINATES: similar to AA sequence:RefSeq:WP_011427359.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488325.1
type IV secretion/conjugal transfer ATPase VirB4
COORDINATES: similar to AA sequence:RefSeq:WP_011509106.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996327.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891511.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967414.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: similar to AA sequence:RefSeq:WP_010975400.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427346.1
two-component system VirA-like sensor kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011542453.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205290.1
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653144.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762565.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653141.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129404.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653134.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653133.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653132.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003501032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653128.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612021.1
COORDINATES: protein motif:HMM:TIGR00079.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653117.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_012653115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653114.1
COORDINATES: protein motif:HMM:NF020037.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003526135.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559417.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330913.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726522.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546112.1
DUF262 domain-containing HNH endonuclease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014537646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637729.1
COORDINATES: protein motif:HMM:NF016488.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_020803210.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
BsuBI/PstI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_003187098.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509410.1