Halobacterium litoreum strain ZS-54-S2 plasmid unnamed1, complete sequence.
type: Entry
definition: Halobacterium litoreum strain ZS-54-S2 plasmid unnamed1, complete sequence.
sequence version: NZ_CP089467.1
sequence date: 2022-12-31
sequence: sequence
division: CON
label: NZ_CP089467.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN23798363
keyword: RefSeq
source: Halobacterium litoreum
organism: Halobacterium litoreum
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP089467.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 1539.44x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 02:44:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,980\nCDSs (total) :: 2,928\nGenes (coding) :: 2,920\nCDSs (with protein) :: 2,920\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 1 of 8\nPseudo Genes (incomplete) :: 7 of 8\nPseudo Genes (internal stop) :: 0 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11599
topology: circular
so has quality: SO_0000988
location: 1..11599
location: region:1-11599:1
RO_0002162: 2039234

NZ_CP089467
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN23798363
type: BioSample
SIO_000068: biosample

1
title: Halobacterium litoreum sp. nov., isolated from a marine solar saltern
author: Cui, H.-L.
journal: Unpublished

2
title: Direct Submission
author: Cui, H.-L.
journal: Submitted (09-DEC-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11599:1
position: 11599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11599:1:source
so part of: sequence
organism: Halobacterium litoreum
mol type: genomic DNA
strain: ZS-54-S2
isolation source: sediment
type material: type strain of Halobacterium litoreum
plasmid: unnamed1
country: China:Zhoushan
collection date: 2017

2039234
type: Taxonomy
SIO_000068: taxonomy

LT972_RS14710
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14710
old locus tag: LT972_14710
so part of: sequence
location: join(11429..11599,1..54)
location: region:1-11599:1
so has part: feature:11429-11599:1:exon
so has part: feature:1-54:1:exon
subclass of: SO_0000010

69119268
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:11429-11599:1:exon

position:11429:1
position: 11429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-54:1:exon

position:54:1
position: 54
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LT972_RS14710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14710
old locus tag: LT972_14710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: sigma-70 region 4 domain-containing protein
translation: MSKSERSRTAASVPGTPTRSVKLARLTDAEREVYVSCEEEGLRPAELAQYTEWSESTVRTLLARGRRKVGESDT
SIO_010081: LT972_RS14710
subclass of: SO_0000673
so part of: LT972_RS14710
location: join(11429..11599,1..54)
location: region:1-11599:1
so has part: feature:11429-11599:1:exon
so has part: feature:1-54:1:exon

WP_232572705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11429-11599:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-54:1:exon

LT972_RS14715
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14715
old locus tag: LT972_14715
so part of: sequence
location: 51..1460
location: region:51-1460:1
so has part: feature:51-1460:1:exon
subclass of: SO_0000010

69119269
type: Gene
SIO_000068: ncbigene

position:51:1
position: 51
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1460:1
position: 1460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51-1460:1:exon

LT972_RS14715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14715
old locus tag: LT972_14715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTQADLYDTTGPNIALSREDRELLEDLVRIFDEDLPTLDHDDLVERFEEQHGGFIYTGNDHNPSAETPDLGDFKEQFLPAPLGLPSHGEYGQEDCGVGIPHVCEDCGFSVEIGRTCSQSRCPRCWAAWVMKTAPGLVARIMSAAKMKDGAQYKHHVVVSPPPETYIDAEHPEQAALDAVGDFMDRIDLDGIALYHPWSGAQEDHDDQGEWKFRIGEDADWYGEVREDLEHRPHFHVIGACPHVPGGGVTKALESRTGWIIDRITEKNGSPISLADERSVARALCYSLSHTAIDTRDLEDSFGGEDGAGYVRKKKGSAFHKPVDDVEEAHPSHAENLKEAKDAVHNVAPDVLGIPSMEIECQEQVEKEEDAAKDHDVSELIDEDGDGAGDDAGEDGGDSTKVLKCRGDMVDVDDADFVDDPDWRRQADYAEQAVDAREKWENAGGWQGWSGQATLDAERADVEGDPPPE
SIO_010081: LT972_RS14715
subclass of: SO_0000673
so part of: LT972_RS14715
location: 51..1460
location: region:51-1460:1
so has part: feature:51-1460:1:exon

WP_232572707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51-1460:1:exon

LT972_RS14720
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14720
old locus tag: LT972_14720
so part of: sequence
location: complement(2150..2515)
location: region:2150-2515:-1
so has part: feature:2150-2515:-1:exon
subclass of: SO_0000010

69119270
type: Gene
SIO_000068: ncbigene

position:2150:-1
position: 2150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2515:-1
position: 2515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2150-2515:-1:exon

LT972_RS14720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14720
old locus tag: LT972_14720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKVSLVLDDEDVEDADALVEDGEAASRSEAVRILIDRGREVEDLRTDLQHERARADDLQRQLAVLNEREDNVEELVERVEQETDLLADERQREREREAAGALTRLKWWAFGRDLDDADDE
SIO_010081: LT972_RS14720
subclass of: SO_0000673
so part of: LT972_RS14720
location: complement(2150..2515)
location: region:2150-2515:-1
so has part: feature:2150-2515:-1:exon

WP_232572709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2150-2515:-1:exon

LT972_RS14725
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14725
old locus tag: LT972_14725
so part of: sequence
location: complement(2621..2815)
location: region:2621-2815:-1
so has part: feature:2621-2815:-1:exon
subclass of: SO_0000010

69119271
type: Gene
SIO_000068: ncbigene

position:2621:-1
position: 2621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2815:-1
position: 2815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2621-2815:-1:exon

LT972_RS14725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14725
old locus tag: LT972_14725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDLLASPAVADAVGGFVAAGAAWLIATAENLRREALAHRPDRDQYRTSIFVIICGVYLLVSTL
SIO_010081: LT972_RS14725
subclass of: SO_0000673
so part of: LT972_RS14725
location: complement(2621..2815)
location: region:2621-2815:-1
so has part: feature:2621-2815:-1:exon

WP_232572711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2621-2815:-1:exon

LT972_RS14730
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14730
old locus tag: LT972_14730
so part of: sequence
location: complement(2808..3266)
location: region:2808-3266:-1
so has part: feature:2808-3266:-1:exon
subclass of: SO_0000010

69119272
type: Gene
SIO_000068: ncbigene

position:2808:-1
position: 2808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3266:-1
position: 3266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2808-3266:-1:exon

LT972_RS14730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14730
old locus tag: LT972_14730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRTVDLRDLSRAQRREYDTDRETVAEELVAEVYGARHRPDREDWFDVVDEDASTKYEVKSTSVEIGDEYPAPGRFRLWRAQLRSLIASDAGATAWVAFVLFDEDAGRAVIQRRRPSTVWNIVDRRGGWNESGHEDWGRQHKLPFDEVVDRA
SIO_010081: LT972_RS14730
subclass of: SO_0000673
so part of: LT972_RS14730
location: complement(2808..3266)
location: region:2808-3266:-1
so has part: feature:2808-3266:-1:exon

WP_232572713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2808-3266:-1:exon

LT972_RS14735
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14735
old locus tag: LT972_14735
so part of: sequence
location: complement(3263..3526)
location: region:3263-3526:-1
so has part: feature:3263-3526:-1:exon
subclass of: SO_0000010

69119273
type: Gene
SIO_000068: ncbigene

position:3263:-1
position: 3263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3526:-1
position: 3526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3263-3526:-1:exon

LT972_RS14735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14735
old locus tag: LT972_14735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSRVPCPACALLWPLDRFDACPLCGREPPRSTRDPGPDPDADDGLAADGGADVCLRHRIRYLTESGECPMCERLDDDRADAAGGRA
SIO_010081: LT972_RS14735
subclass of: SO_0000673
so part of: LT972_RS14735
location: complement(3263..3526)
location: region:3263-3526:-1
so has part: feature:3263-3526:-1:exon

WP_232572715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3263-3526:-1:exon

LT972_RS14740
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14740
old locus tag: LT972_14740
so part of: sequence
location: complement(3516..4208)
location: region:3516-4208:-1
so has part: feature:3516-4208:-1:exon
subclass of: SO_0000010

69119274
type: Gene
SIO_000068: ncbigene

position:3516:-1
position: 3516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4208:-1
position: 4208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3516-4208:-1:exon

LT972_RS14740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14740
old locus tag: LT972_14740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVSDDAPAFFTDNGHVFIAGITGSRADMGGKTALANWWLCDPLGDRDLRIFYNAKGSTCVRGERVHTVEQLSRRMADGVRHFDFVPETQDWVTPHERLRQFIAELPTEMSKAVVHDETPEYEGETGSLAWFVKVAGQSDGVHAANCKSLVLAQDPTDTEQSTRKQTPTHVWVGPTSTDYRQYFASKAFSNHFDAIIDEQDPYEWTVMQGPRDEDRERFAPVPEEYADAQ
SIO_010081: LT972_RS14740
subclass of: SO_0000673
so part of: LT972_RS14740
location: complement(3516..4208)
location: region:3516-4208:-1
so has part: feature:3516-4208:-1:exon

WP_232572716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3516-4208:-1:exon

LT972_RS14745
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14745
old locus tag: LT972_14745
so part of: sequence
location: complement(4195..4707)
location: region:4195-4707:-1
so has part: feature:4195-4707:-1:exon
subclass of: SO_0000010

69119275
type: Gene
SIO_000068: ncbigene

position:4195:-1
position: 4195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4707:-1
position: 4707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4195-4707:-1:exon

LT972_RS14745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14745
old locus tag: LT972_14745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEDEFDPATAAARATGDLVDTDADDLEDVPDDAGAGDGADPTPDPDTDGDDSGGESTTSSAGSAGAVATFLLPLFVADEAGPTASTLRDEVGVGHTTAHLLDGGLDYVLHFSDTLGDQLGDSLGPAGKLGRGLSPLLDDAGADDQEDSDDAADAADDVGPSGLPSDAGV
SIO_010081: LT972_RS14745
subclass of: SO_0000673
so part of: LT972_RS14745
location: complement(4195..4707)
location: region:4195-4707:-1
so has part: feature:4195-4707:-1:exon

WP_232572717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4195-4707:-1:exon

LT972_RS14750
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14750
old locus tag: LT972_14750
so part of: sequence
location: complement(4700..4882)
location: region:4700-4882:-1
so has part: feature:4700-4882:-1:exon
subclass of: SO_0000010

69119276
type: Gene
SIO_000068: ncbigene

position:4700:-1
position: 4700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4882:-1
position: 4882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4700-4882:-1:exon

LT972_RS14750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14750
old locus tag: LT972_14750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDVLVRSDRDTYTLSDKLRVNHHGWVEHHEDGAVRALTPPNVVDRVLIDVDPEEWVDDE
SIO_010081: LT972_RS14750
subclass of: SO_0000673
so part of: LT972_RS14750
location: complement(4700..4882)
location: region:4700-4882:-1
so has part: feature:4700-4882:-1:exon

WP_232572718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4700-4882:-1:exon

LT972_RS14755
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14755
old locus tag: LT972_14755
so part of: sequence
location: complement(4879..5469)
location: region:4879-5469:-1
so has part: feature:4879-5469:-1:exon
subclass of: SO_0000010

69119277
type: Gene
SIO_000068: ncbigene

position:4879:-1
position: 4879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5469:-1
position: 5469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4879-5469:-1:exon

LT972_RS14755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14755
old locus tag: LT972_14755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPGGSDVPDDRDDEDQCQHCGRWYGRDGVLSHESHCDWADSDVRMHDLEAKGARMRAADHSIDGVDLEAVDPDPAPAPDPDDVDAGDEQAATDGGPREPPTFGNDSTTTSSTSESAAATTSAPTLGDDRDCPECGSDSTVRPEDLDSDLLGPLPDGLEAKDRLCLACATYEDGGLCVEAFDEDARDDAVDVDGVVA
SIO_010081: LT972_RS14755
subclass of: SO_0000673
so part of: LT972_RS14755
location: complement(4879..5469)
location: region:4879-5469:-1
so has part: feature:4879-5469:-1:exon

WP_232572720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4879-5469:-1:exon

LT972_RS14760
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14760
old locus tag: LT972_14760
so part of: sequence
location: complement(5469..5678)
location: region:5469-5678:-1
so has part: feature:5469-5678:-1:exon
subclass of: SO_0000010

69119278
type: Gene
SIO_000068: ncbigene

position:5678:-1
position: 5678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5469-5678:-1:exon

LT972_RS14760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14760
old locus tag: LT972_14760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIIGLPTAFIAAAVVSLAAVNAGNAHTHRFATRGFALLVAVEIGALTALAHLTTGAGAAILGAIAGVI
SIO_010081: LT972_RS14760
subclass of: SO_0000673
so part of: LT972_RS14760
location: complement(5469..5678)
location: region:5469-5678:-1
so has part: feature:5469-5678:-1:exon

WP_232572722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5469-5678:-1:exon

LT972_RS14765
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14765
old locus tag: LT972_14765
so part of: sequence
location: 5884..6075
location: region:5884-6075:1
so has part: feature:5884-6075:1:exon
subclass of: SO_0000010

69119279
type: Gene
SIO_000068: ncbigene

position:5884:1
position: 5884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6075:1
position: 6075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5884-6075:1:exon

LT972_RS14765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14765
old locus tag: LT972_14765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFNIPIVNESIDTDDPAESAQNFGGAVLGFTALAGAAGVSTYLYTRLKNVAGVEGQTFPEGI
SIO_010081: LT972_RS14765
subclass of: SO_0000673
so part of: LT972_RS14765
location: 5884..6075
location: region:5884-6075:1
so has part: feature:5884-6075:1:exon

WP_232572681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5884-6075:1:exon

LT972_RS14770
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14770
old locus tag: LT972_14770
so part of: sequence
location: 6077..6577
location: region:6077-6577:1
so has part: feature:6077-6577:1:exon
subclass of: SO_0000010

69119280
type: Gene
SIO_000068: ncbigene

position:6077:1
position: 6077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6577:1
position: 6577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6077-6577:1:exon

LT972_RS14770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14770
old locus tag: LT972_14770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPADLRPDPRYFNIGEKKTVTSDDLQQVTIGENETTIFSKMVPGDKVAWFGHGQEDREYAKAFIYADLVASGNGTGTAGDAIEGELVAVYTDSEQRHVLASTTVDSLGELSDAKADTRTDRPVFEAHGEHANPERHLEFRILPNSASTGMEIDPSASEARLYYSQS
SIO_010081: LT972_RS14770
subclass of: SO_0000673
so part of: LT972_RS14770
location: 6077..6577
location: region:6077-6577:1
so has part: feature:6077-6577:1:exon

WP_232572683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6077-6577:1:exon

LT972_RS14775
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14775
old locus tag: LT972_14775
so part of: sequence
location: 6597..7025
location: region:6597-7025:1
so has part: feature:6597-7025:1:exon
subclass of: SO_0000010

69119281
type: Gene
SIO_000068: ncbigene

position:6597:1
position: 6597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7025:1
position: 7025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6597-7025:1:exon

LT972_RS14775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14775
old locus tag: LT972_14775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSANNSERRDSVRFSGQVSPDDTETLTKTVQEPATVEEVSVRFYAGPRLDLEVVPFVDVGESSQSNRIPLIDFRGKQYVDGDDDYWIFPVSESIERDDTLGVEVRNVDSSNAYDFSVDVVVDRAGGTQRAASSLFDSIRGVF
SIO_010081: LT972_RS14775
subclass of: SO_0000673
so part of: LT972_RS14775
location: 6597..7025
location: region:6597-7025:1
so has part: feature:6597-7025:1:exon

WP_232572685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6597-7025:1:exon

LT972_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14780
old locus tag: LT972_14780
so part of: sequence
location: 7027..7362
location: region:7027-7362:1
so has part: feature:7027-7362:1:exon
subclass of: SO_0000010

69119282
type: Gene
SIO_000068: ncbigene

position:7027:1
position: 7027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7362:1
position: 7362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7027-7362:1:exon

LT972_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14780
old locus tag: LT972_14780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008319722.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGVEQFSQLVAGDGGTLATSTSGTVETDNYTAGAGFDAADGEVTLNPAETIQELGITGCGADAVATLSTVGGDDVVVPLRGANVVWDTLEVDSVSITDSSNDRLTGWWAGE
SIO_010081: LT972_RS14780
subclass of: SO_0000673
so part of: LT972_RS14780
location: 7027..7362
location: region:7027-7362:1
so has part: feature:7027-7362:1:exon

WP_232572686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7027-7362:1:exon

LT972_RS14785
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14785
old locus tag: LT972_14785
so part of: sequence
location: 7355..8071
location: region:7355-8071:1
so has part: feature:7355-8071:1:exon
subclass of: SO_0000010

69119283
type: Gene
SIO_000068: ncbigene

position:7355:1
position: 7355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8071:1
position: 8071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7355-8071:1:exon

LT972_RS14785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14785
old locus tag: LT972_14785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDVGTAPARYQAFDYVGASKPANATSGETWFDTSAGDALVFVDDAGTTEQLDIQDHSALAGSSDPDAHHARYSDAEAQAAADGVVDADTVDGQHASDLGAPGSTAAVSGPQFRISGRGGSNVFETFAGNTSTPSVGFAGHPFACSKVEVSAQEGGNGWQGTVGGDITEVWIREPDGSRTSLWSGRETVSGFSKTLSFGVRLATAVEFDYDNTTGDRTKTTVSATPFQRRVPYHNHSI
SIO_010081: LT972_RS14785
subclass of: SO_0000673
so part of: LT972_RS14785
location: 7355..8071
location: region:7355-8071:1
so has part: feature:7355-8071:1:exon

WP_232572688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7355-8071:1:exon

LT972_RS14790
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14790
old locus tag: LT972_14790
so part of: sequence
location: 8130..8774
location: region:8130-8774:1
so has part: feature:8130-8774:1:exon
subclass of: SO_0000010

69119284
type: Gene
SIO_000068: ncbigene

position:8130:1
position: 8130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8774:1
position: 8774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8774:1:exon

LT972_RS14790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14790
old locus tag: LT972_14790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLPGSSYGGFDDSTPDAEPDAPEWSPGGTPDADPPEPDPVNDGNPSYSDWNTGLTENGVDDSGSPNDDPVQSDNDNDDLVVPTGANNPTNYDVDDGNVGDTTLGGNDSSQATNPDVHDAVGSTGGTPDEDPGYVPDPTTEGADTVLVNTDVSDPASIVRDLPDRFNEVLNETYSGDGGVEETVSGALDGVSRVVVAVVLAVVALVVLAFGGGE
SIO_010081: LT972_RS14790
subclass of: SO_0000673
so part of: LT972_RS14790
location: 8130..8774
location: region:8130-8774:1
so has part: feature:8130-8774:1:exon

WP_232572690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8130-8774:1:exon

LT972_RS14795
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14795
old locus tag: LT972_14795
so part of: sequence
location: 8774..9211
location: region:8774-9211:1
so has part: feature:8774-9211:1:exon
subclass of: SO_0000010

69119285
type: Gene
SIO_000068: ncbigene

position:9211:1
position: 9211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8774-9211:1:exon

LT972_RS14795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14795
old locus tag: LT972_14795
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAWIPHVRGFSPGELAENIPEAANQLGRDIGNGNVFYAGQDEAGVVDTLFGRADEAIGTGPVDDAIDWAFVGHAGDTVDAGGPALRDPLGFLESAASGAAGAAEGASNAAEIGFEHWRIVVFAALAAVVLWFIRPFIGLVGGEA
SIO_010081: LT972_RS14795
subclass of: SO_0000673
so part of: LT972_RS14795
location: 8774..9211
location: region:8774-9211:1
so has part: feature:8774-9211:1:exon

WP_232572692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8774-9211:1:exon

LT972_RS14800
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14800
old locus tag: LT972_14800
so part of: sequence
location: 9315..9563
location: region:9315-9563:1
so has part: feature:9315-9563:1:exon
subclass of: SO_0000010

69119286
type: Gene
SIO_000068: ncbigene

position:9315:1
position: 9315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9563:1
position: 9563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9315-9563:1:exon

LT972_RS14800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14800
old locus tag: LT972_14800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELGAVGSPIDVATFVTILVLFRYETAADLGTLSAGVVALAERDPGVDDARLAADLDVDDREVSAVRATACDGGHSQDGGER
SIO_010081: LT972_RS14800
subclass of: SO_0000673
so part of: LT972_RS14800
location: 9315..9563
location: region:9315-9563:1
so has part: feature:9315-9563:1:exon

WP_232572694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9315-9563:1:exon

LT972_RS14805
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14805
old locus tag: LT972_14805
so part of: sequence
location: 9560..9712
location: region:9560-9712:1
so has part: feature:9560-9712:1:exon
subclass of: SO_0000010

69119287
type: Gene
SIO_000068: ncbigene

position:9560:1
position: 9560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9712:1
position: 9712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9560-9712:1:exon

LT972_RS14805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14805
old locus tag: LT972_14805
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEILAQTVKWAASTGAPNALVVLALLTQPSTWTDRAVAAIDARVGGGSS
SIO_010081: LT972_RS14805
subclass of: SO_0000673
so part of: LT972_RS14805
location: 9560..9712
location: region:9560-9712:1
so has part: feature:9560-9712:1:exon

WP_232572695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9560-9712:1:exon

LT972_RS14810
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14810
old locus tag: LT972_14810
so part of: sequence
location: 9709..10125
location: region:9709-10125:1
so has part: feature:9709-10125:1:exon
subclass of: SO_0000010

69119288
type: Gene
SIO_000068: ncbigene

position:9709:1
position: 9709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10125:1
position: 10125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9709-10125:1:exon

LT972_RS14810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14810
old locus tag: LT972_14810
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAWPVDAVPDGHVAAPHHVYLGLGVLLVVAWVVADDLPHREPVVSVAGALVALFAFGLVWPWYPVVGAAGAVAGVVVALAGVVWPGGMWSTYSSAARALAGVGALVALDDVVEHAFGWATPLDLVWVRVVYPALPST
SIO_010081: LT972_RS14810
subclass of: SO_0000673
so part of: LT972_RS14810
location: 9709..10125
location: region:9709-10125:1
so has part: feature:9709-10125:1:exon

WP_232572696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9709-10125:1:exon

LT972_RS14815
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14815
old locus tag: LT972_14815
so part of: sequence
location: complement(10329..10481)
location: region:10329-10481:-1
so has part: feature:10329-10481:-1:exon
subclass of: SO_0000010

69119289
type: Gene
SIO_000068: ncbigene

position:10329:-1
position: 10329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10481:-1
position: 10481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10329-10481:-1:exon

LT972_RS14815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14815
old locus tag: LT972_14815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAQSEQENDDYIGFDCPSDLKRQVRIEAAKEDISMSQKARELLSDALED
SIO_010081: LT972_RS14815
subclass of: SO_0000673
so part of: LT972_RS14815
location: complement(10329..10481)
location: region:10329-10481:-1
so has part: feature:10329-10481:-1:exon

WP_232572697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10329-10481:-1:exon

LT972_RS14820
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14820
old locus tag: LT972_14820
so part of: sequence
location: 10579..10875
location: region:10579-10875:1
so has part: feature:10579-10875:1:exon
subclass of: SO_0000010

69119290
type: Gene
SIO_000068: ncbigene

position:10579:1
position: 10579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10875:1
position: 10875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10579-10875:1:exon

LT972_RS14820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14820
old locus tag: LT972_14820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGTNQSDDGKSSIGAKIPTANKTALEDIAWAEDEKEDRVFVSDHVRGSIELFLAVRKATGNIPEDARDDVEHIDADEVLARHGLAVVREGERREVEA
SIO_010081: LT972_RS14820
subclass of: SO_0000673
so part of: LT972_RS14820
location: 10579..10875
location: region:10579-10875:1
so has part: feature:10579-10875:1:exon

WP_232572698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10579-10875:1:exon

LT972_RS14825
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14825
old locus tag: LT972_14825
so part of: sequence
location: 10872..11039
location: region:10872-11039:1
so has part: feature:10872-11039:1:exon
subclass of: SO_0000010

69119291
type: Gene
SIO_000068: ncbigene

position:10872:1
position: 10872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11039:1
position: 11039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10872-11039:1:exon

LT972_RS14825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14825
old locus tag: LT972_14825
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAVGRFKATCEGCGRGVIFESEQLTRDAADAHADECDDLAPDEEVAVEEVGGDD
SIO_010081: LT972_RS14825
subclass of: SO_0000673
so part of: LT972_RS14825
location: 10872..11039
location: region:10872-11039:1
so has part: feature:10872-11039:1:exon

WP_232572700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10872-11039:1:exon

LT972_RS14830
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14830
old locus tag: LT972_14830
so part of: sequence
location: 11032..11205
location: region:11032-11205:1
so has part: feature:11032-11205:1:exon
subclass of: SO_0000010

69119292
type: Gene
SIO_000068: ncbigene

position:11032:1
position: 11032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11205:1
position: 11205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11032-11205:1:exon

LT972_RS14830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14830
old locus tag: LT972_14830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004045375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEQPTCAVCGSKVPPDEDHVHVVANAKRMRDRDGREDYYAHPSCWREETAEWRDPA
SIO_010081: LT972_RS14830
subclass of: SO_0000673
so part of: LT972_RS14830
location: 11032..11205
location: region:11032-11205:1
so has part: feature:11032-11205:1:exon

WP_232572701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11032-11205:1:exon

LT972_RS14835
type: Gene
subclass of: SO_0000704
RO_0002162: 2039234
locus tag: LT972_RS14835
old locus tag: LT972_14835
so part of: sequence
location: 11202..11432
location: region:11202-11432:1
so has part: feature:11202-11432:1:exon
subclass of: SO_0000010

69119293
type: Gene
SIO_000068: ncbigene

position:11202:1
position: 11202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11432:1
position: 11432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11202-11432:1:exon

LT972_RS14835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2039234
locus tag: LT972_RS14835
old locus tag: LT972_14835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVGYDEAVTLAHFGADDLPRGSATVMVVEDVESHTTYRAQFDHLGVLREVPHGDRFVARELGTRLDVTPLTEWSK
SIO_010081: LT972_RS14835
subclass of: SO_0000673
so part of: LT972_RS14835
location: 11202..11432
location: region:11202-11432:1
so has part: feature:11202-11432:1:exon

WP_232572703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11202-11432:1:exon