Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats
Submitted (08-NOV-2017) College of Life Sciences, Central China Normal University, Central China Normal University, Wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP024792.1.\nBacteria and source DNA available from the submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2016\nAssembly Method :: HGAP3 v. v2.2.0\nExpected Final Version :: yes\nGenome Coverage :: 228.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 05:48:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,763\nCDSs (total) :: 9,666\nGenes (coding) :: 8,943\nCDSs (with protein) :: 8,943\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 723\nCDSs (without protein) :: 723\nPseudo Genes (ambiguous residues) :: 0 of 723\nPseudo Genes (frameshifted) :: 219 of 723\nPseudo Genes (incomplete) :: 556 of 723\nPseudo Genes (internal stop) :: 117 of 723\nPseudo Genes (multiple problems) :: 149 of 723\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010999515.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017655400.1
COORDINATES: similar to AA sequence:RefSeq:WP_015160772.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017307622.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010993979.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863738.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_012410070.1
COORDINATES: similar to AA sequence:RefSeq:WP_009366610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016867499.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012408843.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015173889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325776.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442213.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010970046.1
COORDINATES: similar to AA sequence:RefSeq:WP_017742461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599457.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_017740944.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308142.1
COORDINATES: protein motif:HMM:NF024954.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_015111483.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012413262.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408594.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006668373.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611691.1
COORDINATES: similar to AA sequence:RefSeq:WP_017293211.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007308104.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006198504.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316347.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953694.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497645.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413047.1
COORDINATES: similar to AA sequence:RefSeq:WP_006279024.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877285.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741190.1
peptidase domain-containing ABC transporter
COORDINATES: protein motif:HMM:NF012846.2
COORDINATES: similar to AA sequence:RefSeq:WP_007043406.1
COORDINATES: protein motif:HMM:NF019325.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412158.1
damage-control phosphatase ARMT1 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016877738.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015214275.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115970.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: similar to AA sequence:RefSeq:WP_017747749.1
COORDINATES: similar to AA sequence:RefSeq:WP_017318540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412153.1
COORDINATES: protein motif:HMM:NF026057.2
COORDINATES: similar to AA sequence:RefSeq:WP_012161282.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013334385.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413301.1
COORDINATES: similar to AA sequence:RefSeq:WP_016878403.1
COORDINATES: similar to AA sequence:RefSeq:WP_017804224.1
COORDINATES: similar to AA sequence:RefSeq:WP_015138268.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412744.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017302149.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015195906.1
COORDINATES: similar to AA sequence:RefSeq:WP_017745666.1
COORDINATES: protein motif:HMM:NF012350.2
COORDINATES: similar to AA sequence:RefSeq:WP_016515248.1
GO:0015368 - calcium:cation antiporter activity [Evidence IEA]
GO:0006816 - calcium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015155683.1
COORDINATES: protein motif:HMM:NF016211.2
COORDINATES: protein motif:HMM:NF040096.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155675.1
COORDINATES: protein motif:HMM:NF018745.2
COORDINATES: protein motif:HMM:NF014689.2
COORDINATES: similar to AA sequence:RefSeq:WP_015197398.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756811.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016872902.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015155666.1
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_015155676.1
Nif11-like leader peptide family natural product precursor
COORDINATES: similar to AA sequence:RefSeq:WP_016868884.1
COORDINATES: similar to AA sequence:RefSeq:WP_019509613.1
COORDINATES: similar to AA sequence:RefSeq:WP_016872909.1
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: similar to AA sequence:RefSeq:WP_015155680.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408342.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308791.1
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015139600.1
COORDINATES: protein motif:HMM:NF015022.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413118.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413122.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413123.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186393.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953813.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413216.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: similar to AA sequence:RefSeq:WP_017320041.1
COORDINATES: similar to AA sequence:RefSeq:WP_017745589.1
helix-turn-helix domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017741192.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015172474.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741189.1
COORDINATES: protein motif:HMM:NF015140.2
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: similar to AA sequence:RefSeq:WP_015217687.1
COORDINATES: protein motif:HMM:NF025000.2
COORDINATES: similar to AA sequence:RefSeq:WP_006197196.1
COORDINATES: similar to AA sequence:RefSeq:WP_017304057.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290830.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408604.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179641.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006278957.1
COORDINATES: protein motif:HMM:NF024777.2
COORDINATES: similar to AA sequence:RefSeq:WP_016950748.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012599448.1
COORDINATES: similar to AA sequence:RefSeq:WP_017311631.1
COORDINATES: protein motif:HMM:NF014526.2
COORDINATES: similar to AA sequence:RefSeq:WP_015127567.1
COORDINATES: similar to AA sequence:RefSeq:WP_017322382.1
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_015126517.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321658.1
COORDINATES: similar to AA sequence:RefSeq:WP_015237040.1
COORDINATES: similar to AA sequence:RefSeq:WP_015112959.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_013719427.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746865.1
COORDINATES: similar to AA sequence:RefSeq:WP_015157789.1
PEP-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011321400.1
COORDINATES: similar to AA sequence:RefSeq:WP_002761930.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321407.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017746869.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746870.1
COORDINATES: protein motif:HMM:NF026115.2
COORDINATES: similar to AA sequence:RefSeq:WP_011321404.1
COORDINATES: similar to AA sequence:RefSeq:WP_016872855.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746873.1
GO:0016740 - transferase activity [Evidence IEA]
PfaD family polyunsaturated fatty acid/polyketide biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_017746874.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207017.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995814.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995815.1
COORDINATES: similar to AA sequence:RefSeq:WP_009787241.1
COORDINATES: protein motif:HMM:NF020427.2
COORDINATES: similar to AA sequence:RefSeq:WP_017317980.1
COORDINATES: similar to AA sequence:RefSeq:WP_017318554.1
COORDINATES: similar to AA sequence:RefSeq:WP_017318553.1
COORDINATES: similar to AA sequence:RefSeq:WP_015158347.1
COORDINATES: similar to AA sequence:RefSeq:WP_015189945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015189946.1
COORDINATES: similar to AA sequence:RefSeq:WP_015127251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408189.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408371.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318381.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012408373.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_017651484.1
COORDINATES: similar to AA sequence:RefSeq:WP_017651483.1
COORDINATES: similar to AA sequence:RefSeq:WP_017651482.1
COORDINATES: similar to AA sequence:RefSeq:WP_015212450.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408375.1
BCSC C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017651074.1
COORDINATES: similar to AA sequence:RefSeq:WP_015161121.1
COORDINATES: similar to AA sequence:RefSeq:WP_045870830.1
COORDINATES: similar to AA sequence:RefSeq:WP_045870829.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184559.1
COORDINATES: similar to AA sequence:RefSeq:WP_017744944.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412934.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412933.1
COORDINATES: similar to AA sequence:RefSeq:WP_009543294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015145733.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748905.1
COORDINATES: similar to AA sequence:RefSeq:WP_009543822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173934.1
TOMM precursor leader peptide-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009543818.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316656.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011316655.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155714.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999030.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412915.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653303.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184553.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407506.1
phycoerythrobilin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_015161138.1
15,16-dihydrobiliverdin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017653317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653318.1
COORDINATES: similar to AA sequence:RefSeq:WP_017318744.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321680.1
COORDINATES: protein motif:HMM:NF024980.2
COORDINATES: similar to AA sequence:RefSeq:WP_015118111.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013124.2