Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats
Submitted (08-NOV-2017) College of Life Sciences, Central China Normal University, Central China Normal University, Wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP024791.1.\nBacteria and source DNA available from the submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2016\nAssembly Method :: HGAP3 v. v2.2.0\nExpected Final Version :: yes\nGenome Coverage :: 228.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 05:48:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,763\nCDSs (total) :: 9,666\nGenes (coding) :: 8,943\nCDSs (with protein) :: 8,943\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 723\nCDSs (without protein) :: 723\nPseudo Genes (ambiguous residues) :: 0 of 723\nPseudo Genes (frameshifted) :: 219 of 723\nPseudo Genes (incomplete) :: 556 of 723\nPseudo Genes (internal stop) :: 117 of 723\nPseudo Genes (multiple problems) :: 149 of 723\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016864768.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016133.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013842.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412053.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015160772.1
COORDINATES: similar to AA sequence:RefSeq:WP_009785159.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_015173889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325776.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442213.1
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413117.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316612.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413039.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413261.1
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413266.1
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316618.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413031.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018815.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611097.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_015188091.1
COORDINATES: protein motif:HMM:NF017658.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413307.1
GO:0019867 - outer membrane [Evidence IEA]
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_012413308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413310.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413194.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413313.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413314.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195159.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413318.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413319.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413320.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316688.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016876843.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115430.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006196051.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196050.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316685.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316684.1
COORDINATES: protein motif:HMM:NF020290.2
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015198185.1
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF039803.1
COORDINATES: similar to AA sequence:RefSeq:WP_015127156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412926.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412927.1
COORDINATES: similar to AA sequence:RefSeq:WP_017651349.1
COORDINATES: similar to AA sequence:RefSeq:WP_016868805.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214428.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863063.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409620.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015114811.1
COORDINATES: similar to AA sequence:RefSeq:WP_015143024.1
COORDINATES: similar to AA sequence:RefSeq:WP_016858338.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558172.1
COORDINATES: similar to AA sequence:RefSeq:WP_017310925.1
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016876792.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413047.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316608.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197193.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995265.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413256.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999591.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316615.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_016861360.1
COORDINATES: similar to AA sequence:RefSeq:WP_015114234.1
COORDINATES: similar to AA sequence:RefSeq:WP_006620060.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599448.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186392.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413124.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413125.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413216.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413215.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: protein motif:HMM:NF039236.1
COORDINATES: similar to AA sequence:RefSeq:WP_015145273.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413074.1
COORDINATES: protein motif:HMM:NF033592.1
COORDINATES: similar to AA sequence:RefSeq:WP_017309353.1
COORDINATES: protein motif:HMM:NF012859.2
COORDINATES: similar to AA sequence:RefSeq:WP_019497656.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413151.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012413221.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413153.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413158.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413263.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412915.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413176.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412919.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015120893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412921.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186457.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211550.1
COORDINATES: protein motif:HMM:NF012367.2
sigma-70 factor domain-containing protein
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF016432.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017744046.1
COORDINATES: similar to AA sequence:RefSeq:WP_009630387.1
COORDINATES: protein motif:HMM:NF021923.2
COORDINATES: similar to AA sequence:RefSeq:WP_017741394.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308115.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012408655.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121181.1
COORDINATES: similar to AA sequence:RefSeq:WP_015180003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413134.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412468.1
COORDINATES: protein motif:HMM:NF024999.2
COORDINATES: similar to AA sequence:RefSeq:WP_015212748.1
choice-of-anchor Q domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012175654.1
COORDINATES: similar to AA sequence:RefSeq:WP_019500899.1
COORDINATES: similar to AA sequence:RefSeq:WP_019500898.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
COORDINATES: protein motif:HMM:NF024980.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412804.1
COORDINATES: protein motif:HMM:NF025869.2
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: similar to AA sequence:RefSeq:WP_019488086.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488173.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201144.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197140.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217884.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217883.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547958.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015155778.1
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013193320.1
COORDINATES: similar to AA sequence:RefSeq:WP_013193322.1
COORDINATES: similar to AA sequence:RefSeq:WP_009768172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413374.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655400.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412833.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999525.1