Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats
Submitted (08-NOV-2017) College of Life Sciences, Central China Normal University, Central China Normal University, Wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP024790.1.\nBacteria and source DNA available from the submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2016\nAssembly Method :: HGAP3 v. v2.2.0\nExpected Final Version :: yes\nGenome Coverage :: 228.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 05:48:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,763\nCDSs (total) :: 9,666\nGenes (coding) :: 8,943\nCDSs (with protein) :: 8,943\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 723\nCDSs (without protein) :: 723\nPseudo Genes (ambiguous residues) :: 0 of 723\nPseudo Genes (frameshifted) :: 219 of 723\nPseudo Genes (incomplete) :: 556 of 723\nPseudo Genes (internal stop) :: 117 of 723\nPseudo Genes (multiple problems) :: 149 of 723\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015955833.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020427.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015137567.1
COORDINATES: similar to AA sequence:RefSeq:WP_015128258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413161.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413162.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413163.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412915.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413176.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412919.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412921.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412926.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012162880.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611692.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_019496044.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316555.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999833.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995265.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999701.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999591.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316615.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_011316572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316536.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217666.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016948771.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413342.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999749.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999752.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999754.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010999755.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999756.1
COORDINATES: protein motif:HMM:NF012618.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413316.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993859.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999762.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999763.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364347.1
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413323.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316320.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316327.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316328.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_006103445.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412961.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307364.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217860.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412966.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412968.1
COORDINATES: similar to AA sequence:RefSeq:WP_017317092.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877689.1
COORDINATES: protein motif:HMM:NF012427.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316635.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013334931.1
COORDINATES: similar to AA sequence:RefSeq:WP_006518786.1
COORDINATES: similar to AA sequence:RefSeq:WP_006103183.1
COORDINATES: similar to AA sequence:RefSeq:WP_006103125.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018815.2
COORDINATES: similar to AA sequence:RefSeq:WP_012413031.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011316618.1
COORDINATES: similar to AA sequence:RefSeq:WP_015129779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413266.1
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010999827.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024922.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316612.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999593.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413042.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012413225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012408631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413122.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413218.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413125.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316558.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413215.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: similar to AA sequence:RefSeq:WP_012410003.1