Nostoc flagelliforme CCNUN1 plasmid pNFSY04, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats
Submitted (08-NOV-2017) College of Life Sciences, Central China Normal University, Central China Normal University, Wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP024789.1.\nBacteria and source DNA available from the submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2016\nAssembly Method :: HGAP3 v. v2.2.0\nExpected Final Version :: yes\nGenome Coverage :: 228.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 05:48:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,763\nCDSs (total) :: 9,666\nGenes (coding) :: 8,943\nCDSs (with protein) :: 8,943\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 723\nCDSs (without protein) :: 723\nPseudo Genes (ambiguous residues) :: 0 of 723\nPseudo Genes (frameshifted) :: 219 of 723\nPseudo Genes (incomplete) :: 556 of 723\nPseudo Genes (internal stop) :: 117 of 723\nPseudo Genes (multiple problems) :: 149 of 723\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006279024.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412926.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: similar to AA sequence:RefSeq:WP_017743074.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017748194.1
COORDINATES: protein motif:HMM:NF017829.2
COORDINATES: similar to AA sequence:RefSeq:WP_015144486.1
COORDINATES: similar to AA sequence:RefSeq:WP_016865975.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201529.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017293211.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_015173889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325776.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442213.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014215.2
COORDINATES: similar to AA sequence:RefSeq:WP_017745817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126936.1
COORDINATES: similar to AA sequence:RefSeq:WP_016874120.1
COORDINATES: similar to AA sequence:RefSeq:WP_019492049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012630653.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166577.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316392.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015209672.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016874898.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314795.1
COORDINATES: similar to AA sequence:RefSeq:WP_015136525.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873179.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210481.1
COORDINATES: similar to AA sequence:RefSeq:WP_015116135.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_017313811.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599457.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016860383.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877285.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013335005.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126354.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875243.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012413225.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352963.1
COORDINATES: protein motif:HMM:NF039575.1
COORDINATES: protein motif:HMM:NF016211.2
COORDINATES: protein motif:HMM:NF040096.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746515.1
COORDINATES: similar to AA sequence:RefSeq:WP_012628402.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155675.1
COORDINATES: similar to AA sequence:RefSeq:WP_013795855.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413139.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413095.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413181.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413180.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115932.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999619.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115922.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655405.1
COORDINATES: similar to AA sequence:RefSeq:WP_008190597.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999624.1
COORDINATES: protein motif:HMM:NF012901.2
acyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007358388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181762.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007358390.1
COORDINATES: similar to AA sequence:RefSeq:WP_007358391.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017744598.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409810.1
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: similar to AA sequence:RefSeq:WP_015128992.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496852.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155700.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413047.1
COORDINATES: similar to AA sequence:RefSeq:WP_011210461.1
COORDINATES: similar to AA sequence:RefSeq:WP_015174937.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611448.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413109.1
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF012699.2
GO:0006629 - lipid metabolic process [Evidence IEA]