Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats
Submitted (08-NOV-2017) College of Life Sciences, Central China Normal University, Central China Normal University, Wuhan, Hubei 430079, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP024788.1.\nBacteria and source DNA available from the submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2016\nAssembly Method :: HGAP3 v. v2.2.0\nExpected Final Version :: yes\nGenome Coverage :: 228.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 05:48:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,763\nCDSs (total) :: 9,666\nGenes (coding) :: 8,943\nCDSs (with protein) :: 8,943\nGenes (RNA) :: 97\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 723\nCDSs (without protein) :: 723\nPseudo Genes (ambiguous residues) :: 0 of 723\nPseudo Genes (frameshifted) :: 219 of 723\nPseudo Genes (incomplete) :: 556 of 723\nPseudo Genes (internal stop) :: 117 of 723\nPseudo Genes (multiple problems) :: 149 of 723\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009460358.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015131226.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412934.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015121303.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015078942.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016863659.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012412930.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413167.1
RpoD/SigA family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012412928.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747736.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412274.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873381.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012796705.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611448.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012408825.1
COORDINATES: similar to AA sequence:RefSeq:WP_017744046.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017316654.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611722.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013719427.1
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015181742.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953694.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557992.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316606.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007357792.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413250.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019497645.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413301.1
COORDINATES: similar to AA sequence:RefSeq:WP_008188939.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013036469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413047.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741303.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016740540.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748506.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015127384.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409507.1
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012413139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413140.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496857.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413146.1
COORDINATES: similar to AA sequence:RefSeq:WP_015180238.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612115.1
COORDINATES: protein motif:HMM:NF016214.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017584124.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_006197193.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316379.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497616.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999792.1
COORDINATES: similar to AA sequence:RefSeq:WP_015078275.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_016861438.1
COORDINATES: similar to AA sequence:RefSeq:WP_017745699.1
COORDINATES: similar to AA sequence:RefSeq:WP_017316362.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316764.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_007303421.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_015213423.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611692.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017743179.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334890.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008312380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496145.1
COORDINATES: similar to AA sequence:RefSeq:WP_010873910.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126936.1
COORDINATES: protein motif:HMM:NF033520.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307732.1
reverse transcriptase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012413086.1
ELKS/Rab6-interacting/CAST family protein
COORDINATES: protein motif:HMM:NF025080.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413252.1