Acinetobacter towneri strain GX3 plasmid pGX3-2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Characterization of Three Porcine Acinetobacter towneri Strains Co-Harboring tet(X3) and blaOXA-58
Front Cell Infect Microbiol 10, 586507 (2020)
Submitted (11-MAR-2021) College of Veterinary Medicine, Northwest A&F University, No.3, Xianyang, China 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071768.1.\nBacteria and source DNA available from swine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 02:33:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,717\nCDSs (total) :: 2,614\nGenes (coding) :: 2,542\nCDSs (with protein) :: 2,542\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 25 of 72\nPseudo Genes (incomplete) :: 49 of 72\nPseudo Genes (internal stop) :: 15 of 72\nPseudo Genes (multiple problems) :: 14 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Northwest Agriculture and Forestry University
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005254629.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005254631.1
COORDINATES: similar to AA sequence:RefSeq:WP_004889724.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014325835.1
Mph(E) family macrolide 2'-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_000052512.1
ABC-F type ribosomal protection protein Msr(E)
COORDINATES: similar to AA sequence:RefSeq:WP_000369784.1
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005028853.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005254458.1
COORDINATES: similar to AA sequence:RefSeq:WP_000585008.1
COORDINATES: similar to AA sequence:RefSeq:WP_015586042.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004728972.1
COORDINATES: similar to AA sequence:RefSeq:WP_010700374.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108961.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108960.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108959.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967389.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967393.1
COORDINATES: similar to AA sequence:RefSeq:WP_004936978.1
COORDINATES: similar to AA sequence:RefSeq:WP_005198822.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086328.1
COORDINATES: similar to AA sequence:RefSeq:WP_000610966.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004970510.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000246756.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004826996.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004728824.1
COORDINATES: similar to AA sequence:RefSeq:WP_004280918.1
COORDINATES: similar to AA sequence:RefSeq:WP_004658743.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004733183.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_005028604.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017401234.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004976952.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005401819.1
COORDINATES: similar to AA sequence:RefSeq:WP_005011935.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004668310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668309.1
IS1-like element ISAba3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003711248.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_001067783.1
IS6-like element IS1008 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_016658831.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
COORDINATES: similar to AA sequence:RefSeq:WP_004780012.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999435.1
COORDINATES: similar to AA sequence:RefSeq:WP_000288001.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611704.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005020944.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108843.1
COORDINATES: similar to AA sequence:RefSeq:WP_004280001.1