Acinetobacter towneri strain GX3 plasmid pGX3-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Characterization of Three Porcine Acinetobacter towneri Strains Co-Harboring tet(X3) and blaOXA-58
Front Cell Infect Microbiol 10, 586507 (2020)
Submitted (11-MAR-2021) College of Veterinary Medicine, Northwest A&F University, No.3, Xianyang, China 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP071767.1.\nBacteria and source DNA available from swine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 02:33:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,717\nCDSs (total) :: 2,614\nGenes (coding) :: 2,542\nCDSs (with protein) :: 2,542\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 25 of 72\nPseudo Genes (incomplete) :: 49 of 72\nPseudo Genes (internal stop) :: 15 of 72\nPseudo Genes (multiple problems) :: 14 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Northwest Agriculture and Forestry University
COORDINATES: similar to AA sequence:RefSeq:WP_004882790.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004761033.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004697445.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004780618.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004907155.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019383609.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004827107.1
COORDINATES: similar to AA sequence:RefSeq:WP_000673265.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000008698.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011621270.1
COORDINATES: similar to AA sequence:RefSeq:WP_000006228.1
COORDINATES: similar to AA sequence:RefSeq:WP_011627351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008609726.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004249762.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017043877.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011469262.1
COORDINATES: similar to AA sequence:RefSeq:WP_001219934.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007480282.1
COORDINATES: similar to AA sequence:RefSeq:WP_019385540.1
esterase-like activity of phytase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005406360.1
COORDINATES: similar to AA sequence:RefSeq:WP_005137497.1
COORDINATES: similar to AA sequence:RefSeq:WP_025243830.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005100737.1
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024728.2
COORDINATES: similar to AA sequence:RefSeq:WP_005173627.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_000059635.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245163.1
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016899210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008109680.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010557527.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005403786.1
COORDINATES: similar to AA sequence:RefSeq:WP_004658363.1
COORDINATES: similar to AA sequence:RefSeq:WP_000627021.1
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
IS3-like element ISAba14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_016655059.1
COORDINATES: similar to AA sequence:RefSeq:WP_004232337.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611942.1
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
transposase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_032492145.1
GO:0046677 - response to antibiotic [Evidence IEA]
APH(3')-I family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020252913.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060600.1
tetracycline-inactivating monooxygenase Tet(X3)
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1
IS91-like element ISVsa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: protein motif:HMM:NF012616.2
COORDINATES: similar to AA sequence:RefSeq:WP_015176280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004381796.1
COORDINATES: similar to AA sequence:RefSeq:WP_032491181.1
trimethoprim-resistant dihydrofolate reductase DfrA20
COORDINATES: similar to AA sequence:RefSeq:WP_011584676.1
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0006231 - dTMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:WP_001381192.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
COORDINATES: similar to AA sequence:RefSeq:WP_014325835.1
Mph(E)/Mph(G) family macrolide 2'-phosphotransferase
COORDINATES: protein motif:HMM:NF025124.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612069.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426322.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006581699.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611903.1
COORDINATES: similar to AA sequence:RefSeq:WP_000520529.1
COORDINATES: similar to AA sequence:RefSeq:WP_004647749.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004647750.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:YP_004995702.1
COORDINATES: similar to AA sequence:RefSeq:WP_004282305.1
COORDINATES: similar to AA sequence:RefSeq:WP_000286964.1
COORDINATES: similar to AA sequence:RefSeq:WP_000985610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016540216.1
COORDINATES: similar to AA sequence:RefSeq:WP_004807289.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004946882.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005009897.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020752726.1
COORDINATES: similar to AA sequence:RefSeq:WP_020752725.1
two-component sensor histidine kinase AdeS
COORDINATES: similar to AA sequence:RefSeq:WP_005009903.1
efflux system response regulator transcription factor AdeR
COORDINATES: similar to AA sequence:RefSeq:WP_015586042.1
IS1-like element ISAba3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002002480.1
carbapenem-hydrolyzing class D beta-lactamase OXA-58
COORDINATES: protein motif:HMM:NF014376.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
AraC family ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019383542.1
COORDINATES: similar to AA sequence:RefSeq:WP_006582675.1
COORDINATES: similar to AA sequence:RefSeq:WP_000172759.1
COORDINATES: similar to AA sequence:RefSeq:WP_001180106.1
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
COORDINATES: similar to AA sequence:RefSeq:WP_000369784.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555511.1
COORDINATES: similar to AA sequence:RefSeq:WP_000052512.1
ABC-F type ribosomal protection protein Msr(E)
Mph(E) family macrolide 2'-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004889724.1
COORDINATES: similar to AA sequence:RefSeq:WP_016653412.1
COORDINATES: similar to AA sequence:RefSeq:WP_005194067.1
COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
COORDINATES: similar to AA sequence:RefSeq:WP_019384352.1
COORDINATES: similar to AA sequence:RefSeq:WP_000361155.1
COORDINATES: similar to AA sequence:RefSeq:WP_005246381.1
COORDINATES: similar to AA sequence:RefSeq:WP_019836976.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_004994754.1
COORDINATES: similar to AA sequence:RefSeq:WP_016658936.1
COORDINATES: similar to AA sequence:RefSeq:WP_000193118.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016658832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671102.1
COORDINATES: similar to AA sequence:RefSeq:YP_004997866.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016659752.1
COORDINATES: similar to AA sequence:RefSeq:WP_000358348.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611152.1
COORDINATES: protein motif:HMM:NF021498.2
COORDINATES: similar to AA sequence:RefSeq:WP_004672268.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004762885.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_004871211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004871208.1
COORDINATES: similar to AA sequence:RefSeq:WP_010960158.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000101605.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004882792.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein