Providencia huaxiensis strain WCHPr000369 plasmid pIMP4_000369, complete sequence.
type: Entry
definition: Providencia huaxiensis strain WCHPr000369 plasmid pIMP4_000369, complete sequence.
sequence version: NZ_CP031121.1
sequence date: 2023-05-14
sequence: sequence
division: CON
label: NZ_CP031121.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07508212
keyword: RefSeq
source: Providencia huaxiensis
organism: Providencia huaxiensis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Providencia.
reference: 1
references: 32176782
reference: 2
references: 31162027
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031121.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 09:56:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,506\nCDSs (total) :: 4,403\nGenes (coding) :: 4,290\nCDSs (with protein) :: 4,290\nGenes (RNA) :: 103\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 23 of 113\nPseudo Genes (incomplete) :: 88 of 113\nPseudo Genes (internal stop) :: 8 of 113\nPseudo Genes (multiple problems) :: 5 of 113\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18784
topology: circular
so has quality: SO_0000988
location: 1..18784
location: region:1-18784:1
RO_0002162: 2027290

NZ_CP031121
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07508212
type: BioSample
SIO_000068: biosample

1
title: A Pandrug-Resistant Providencia Carrying Two blaIMP Carbapenemase-Encoding Genes Including blaIMP-69, a New blaIMP Variant, on a Newly Identified Worldwide-Distributed IncC Plasmid
author: Zhang, X.
author: Wang, C.
author: Feng, Y.
author: Long, H.
author: Zong, Z.
journal: J Infect Dis 221 (Suppl 2), S253-S256 (2020)
pubmed: 32176782

32176782
type: PubMed
SIO_000068: pubmed

2
title: Providencia huaxiensis sp. nov., recovered from a human rectal swab
author: Hu, Y.
author: Feng, Y.
author: Zhang, X.
author: Zong, Z.
journal: Int J Syst Evol Microbiol
volume: 69
issue: 9
pages: 2638-2643
year: 2019
pubmed: 31162027

31162027
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
author: Zhang, X.
author: Hu, Y.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (17-JUL-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Zhang, X.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (17-AUG-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18784:1
position: 18784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18784:1:source
so part of: sequence
organism: Providencia huaxiensis
mol type: genomic DNA
strain: WCHPr000369
host: Homo sapiens
type material: type strain of Providencia huaxiensis
plasmid: pIMP4_000369
country: China: Sichuan, Chengdu
collection date: 2015

2027290
type: Taxonomy
SIO_000068: taxonomy

CYG50_RS00290
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00290
old locus tag: CYG50_00290
so part of: sequence
location: complement(213..1217)
location: region:213-1217:-1
so has part: feature:213-1217:-1:exon
subclass of: SO_0000010

position:213:-1
position: 213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1217:-1
position: 1217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213-1217:-1:exon

CYG50_RS00290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00290
old locus tag: CYG50_00290
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS110-like element IS5075 family transposase
translation: MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLAELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
SIO_010081: CYG50_RS00290
subclass of: SO_0000673
so part of: CYG50_RS00290
location: complement(213..1217)
location: region:213-1217:-1
so has part: feature:213-1217:-1:exon

WP_000427614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:213-1217:-1:exon

CYG50_RS00295
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00295
old locus tag: CYG50_00295
so part of: sequence
location: complement(1296..4268)
location: region:1296-4268:-1
so has part: feature:1296-4268:-1:exon
subclass of: SO_0000010

position:1296:-1
position: 1296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4268:-1
position: 4268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1296-4268:-1:exon

CYG50_RS00295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00295
old locus tag: CYG50_00295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001138064.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: Tn3 family transposase
translation: MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLGFAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTRREHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLRRQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRKDGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNRLLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRIIGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAAIEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVLKLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDDGIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKLASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGLKITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLKTSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDETYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPMISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTLLQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA
SIO_010081: CYG50_RS00295
subclass of: SO_0000673
so part of: CYG50_RS00295
location: complement(1296..4268)
location: region:1296-4268:-1
so has part: feature:1296-4268:-1:exon

WP_001138073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1296-4268:-1:exon

CYG50_RS00300
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00300
old locus tag: CYG50_00300
pseudo: true
so part of: sequence
location: complement(<4274..4828)
location: region:4274-4828:-1
so has part: feature:4274-4828:-1:exon
subclass of: SO_0000010

position:4274:-1
position: 4274
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4828:-1
position: 4828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4274-4828:-1:exon

CYG50_RS00300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00300
old locus tag: CYG50_00300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: recombinase family protein
SIO_010081: CYG50_RS00300
subclass of: SO_0000673
so part of: CYG50_RS00300
location: complement(<4274..4828)
location: region:4274-4828:-1
so has part: feature:4274-4828:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4274-4828:-1:exon

CYG50_RS00310
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
gene: intI1
locus tag: CYG50_RS00310
old locus tag: CYG50_00310
so part of: sequence
location: complement(5134..6147)
location: region:5134-6147:-1
so has part: feature:5134-6147:-1:exon
subclass of: SO_0000010

position:5134:-1
position: 5134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6147:-1
position: 6147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5134-6147:-1:exon

CYG50_RS00310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
gene: intI1
locus tag: CYG50_RS00310
old locus tag: CYG50_00310
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class 1 integron integrase IntI1
translation: MKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
SIO_010081: CYG50_RS00310
subclass of: SO_0000673
so part of: CYG50_RS00310
location: complement(5134..6147)
location: region:5134-6147:-1
so has part: feature:5134-6147:-1:exon

WP_002075255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5134-6147:-1:exon

CYG50_RS00315
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00315
old locus tag: CYG50_00315
so part of: sequence
location: 6300..7040
location: region:6300-7040:1
so has part: feature:6300-7040:1:exon
subclass of: SO_0000010

position:6300:1
position: 6300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7040:1
position: 7040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6300-7040:1:exon

CYG50_RS00315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00315
old locus tag: CYG50_00315
EC number: 3.5.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_060614779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: subclass B1 metallo-beta-lactamase IMP-4
translation: MSKLSVFFIFLFCSIATAAEPLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVDAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSQSIPTYASELTNELLKKDGKVQAKNSFGGVNYWLVKNKIEVFYPGPGHTPDNLVVWLPERKILFGGCFIKPYGLGNLGDANLEAWPKSAKLLISKYGKAKLVVPSHSEAGDASLLKLTLEQAVKGLNESKKPSKLSN
SIO_010081: CYG50_RS00315
subclass of: SO_0000673
so part of: CYG50_RS00315
location: 6300..7040
location: region:6300-7040:1
so has part: feature:6300-7040:1:exon

WP_015060105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6300-7040:1:exon

CYG50_RS00320
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
gene: qacG2
locus tag: CYG50_RS00320
old locus tag: CYG50_00320
so part of: sequence
location: 7272..7604
location: region:7272-7604:1
so has part: feature:7272-7604:1:exon
subclass of: SO_0000010

position:7272:1
position: 7272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7604:1
position: 7604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7272-7604:1:exon

CYG50_RS00320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
gene: qacG2
locus tag: CYG50_RS00320
old locus tag: CYG50_00320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015063357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: quaternary ammonium compound efflux SMR transporter QacG2
translation: MKNWLFLATSIIFEVIATSALKSSEGFTRLVPSFIVVAGYAAAFYFLSLTLKSIPVGIAYAVWSGLGIVLVTAIAWVLHGQKLDMWGFVGVGFIISGVAVLNLLSKASVH
SIO_010081: CYG50_RS00320
subclass of: SO_0000673
so part of: CYG50_RS00320
location: 7272..7604
location: region:7272-7604:1
so has part: feature:7272-7604:1:exon

WP_015063357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7272-7604:1:exon

CYG50_RS00325
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00325
old locus tag: CYG50_00325
so part of: sequence
location: 7731..8285
location: region:7731-8285:1
so has part: feature:7731-8285:1:exon
subclass of: SO_0000010

position:7731:1
position: 7731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8285:1
position: 8285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7731-8285:1:exon

CYG50_RS00325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00325
old locus tag: CYG50_00325
EC number: 2.3.1.82
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: aminoglycoside N-acetyltransferase AAC(6')-Ib4
translation: MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFERTRSDA
SIO_010081: CYG50_RS00325
subclass of: SO_0000673
so part of: CYG50_RS00325
location: 7731..8285
location: region:7731-8285:1
so has part: feature:7731-8285:1:exon

WP_003159191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7731-8285:1:exon

CYG50_RS00330
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00330
old locus tag: CYG50_00330
so part of: sequence
location: 8380..9012
location: region:8380-9012:1
so has part: feature:8380-9012:1:exon
subclass of: SO_0000010

position:8380:1
position: 8380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9012:1
position: 9012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8380-9012:1:exon

CYG50_RS00330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00330
old locus tag: CYG50_00330
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002075262.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: type B-3 chloramphenicol O-acetyltransferase CatB3
translation: MTNYFDSPFKGKLLSEQVKNPNIKVGRYSYYSGYYHGHSFDDCARYLFPDRDDVDKLIIGSFCSIGSGASFIMAGNQGHRYDWASSFPFFYMQEEPAFSSALDAFQKAGNTVIGNDVWIGSEAMVMPGIKIGHGAVIGSRSLVTKDVEPYAIVGGNPAKKIKKRFTDEEISLLLEMEWWNWSLEKIKAAMPMLCSSNIVGLHKYWLEFAV
SIO_010081: CYG50_RS00330
subclass of: SO_0000673
so part of: CYG50_RS00330
location: 8380..9012
location: region:8380-9012:1
so has part: feature:8380-9012:1:exon

WP_000186237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8380-9012:1:exon

CYG50_RS00335
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
gene: ltrA
locus tag: CYG50_RS00335
old locus tag: CYG50_00335
so part of: sequence
location: complement(9084..10415)
location: region:9084-10415:-1
so has part: feature:9084-10415:-1:exon
subclass of: SO_0000010

position:9084:-1
position: 9084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10415:-1
position: 10415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9084-10415:-1:exon

CYG50_RS00335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
gene: ltrA
locus tag: CYG50_RS00335
old locus tag: CYG50_00335
EC number: 2.7.7.49
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017444812.1
GO function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0000373 - Group II intron splicing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: group II intron reverse transcriptase/maturase
translation: MSHLNTRTPSGDDVTQRSDMKPAFSNDLFEHVLQEDNLSAAWKRVRANKGAAGIDGMTIDEFPAWVRSGNWKALKQQLVTGCYQPSPVRRVEIAKPDGGTRQLGIPTVTDRVIQQAITQVLTPIFDPEFSEHSFGFRPGRNGQQAVKQVQSIIKEGRRFAVDVDLSKFFDRVNHDLLMTRLGDKVKDKRLLRLIKRYLRAGFIDNQFKGESRVGVPQGGPLSPLLANIMLDSLDKELEKRGHKFARYADDFTILVKSQRAGERVLRSISQYLQNRLKLVVNTNKSRVVKTNESQFLGFTFKANRIHWHPKTLLKFKQNVRKLTNRNWGVSMKYQLFKISQYLRGWINYFGIASGYQHCVELDHWIRRRVRMAYWRQWRKPRTKVRNLMRLGVHVQAAVACGITSKGPWRSSKTPGINQALSNAYLKSQGLYALRDGWIKLHHS
SIO_010081: CYG50_RS00335
subclass of: SO_0000673
so part of: CYG50_RS00335
location: complement(9084..10415)
location: region:9084-10415:-1
so has part: feature:9084-10415:-1:exon

WP_069625236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9084-10415:-1:exon

CYG50_RS00340
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00340
old locus tag: CYG50_00340
so part of: sequence
location: 11095..11502
location: region:11095-11502:1
so has part: feature:11095-11502:1:exon
subclass of: SO_0000010

position:11095:1
position: 11095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11502:1
position: 11502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11095-11502:1:exon

CYG50_RS00340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00340
old locus tag: CYG50_00340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000679428.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: quaternary ammonium compound efflux SMR transporter QacE
translation: MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPWWRCSAFWISPRTPSSMRAGG
SIO_010081: CYG50_RS00340
subclass of: SO_0000673
so part of: CYG50_RS00340
location: 11095..11502
location: region:11095-11502:1
so has part: feature:11095-11502:1:exon

WP_282555146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11095-11502:1:exon

CYG50_RS00345
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
gene: sul1
locus tag: CYG50_RS00345
old locus tag: CYG50_00345
so part of: sequence
location: 11436..12275
location: region:11436-12275:1
so has part: feature:11436-12275:1:exon
subclass of: SO_0000010

position:11436:1
position: 11436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12275:1
position: 12275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11436-12275:1:exon

CYG50_RS00345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
gene: sul1
locus tag: CYG50_RS00345
old locus tag: CYG50_00345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: sulfonamide-resistant dihydropteroate synthase Sul1
translation: MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGLDHA
SIO_010081: CYG50_RS00345
subclass of: SO_0000673
so part of: CYG50_RS00345
location: 11436..12275
location: region:11436-12275:1
so has part: feature:11436-12275:1:exon

WP_000259031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11436-12275:1:exon

CYG50_RS00355
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00355
old locus tag: CYG50_00355
so part of: sequence
location: 12403..12903
location: region:12403-12903:1
so has part: feature:12403-12903:1:exon
subclass of: SO_0000010

position:12403:1
position: 12403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12903:1
position: 12903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12403-12903:1:exon

CYG50_RS00355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00355
old locus tag: CYG50_00355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: GNAT family N-acetyltransferase
translation: MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARIDRTFAETFVLRSELLVASCSDGIVGCCTLSAEDPEFWPDALKGEAAYLHKLAVRRTHAGRGVSSALIEACRHAARTQGCAKLRLDCHPNLRGLYERLGFTHVDTFNPGWDPTFIAERLELEI
SIO_010081: CYG50_RS00355
subclass of: SO_0000673
so part of: CYG50_RS00355
location: 12403..12903
location: region:12403-12903:1
so has part: feature:12403-12903:1:exon

WP_000376623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12403-12903:1:exon

CYG50_RS00365
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00365
old locus tag: CYG50_00365
pseudo: true
so part of: sequence
location: 13410..>14156
location: region:13410-14156:1
so has part: feature:13410-14156:1:exon
subclass of: SO_0000010

position:13410:1
position: 13410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14156:1
position: 14156
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13410-14156:1:exon

CYG50_RS00365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00365
old locus tag: CYG50_00365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006939175.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: IS6-like element IS6100 family transposase
SIO_010081: CYG50_RS00365
subclass of: SO_0000673
so part of: CYG50_RS00365
location: 13410..>14156
location: region:13410-14156:1
so has part: feature:13410-14156:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13410-14156:1:exon

CYG50_RS00380
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
gene: mphR(A)
locus tag: CYG50_RS00380
old locus tag: CYG50_00380
so part of: sequence
location: complement(14667..15251)
location: region:14667-15251:-1
so has part: feature:14667-15251:-1:exon
subclass of: SO_0000010

position:14667:-1
position: 14667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15251:-1
position: 15251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14667-15251:-1:exon

CYG50_RS00380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
gene: mphR(A)
locus tag: CYG50_RS00380
old locus tag: CYG50_00380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001137892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: macrolide-binding transcriptional repressor MphR(A)
translation: MPRPKLKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIPIGAGPQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQVPELRTLAIQRNRAVVEGIRKRLPPGAPAAAELLLHSVIAGATMQWAVDPDGELADHVLAQIAAILCLMFPEHDDFQLLQAHA
SIO_010081: CYG50_RS00380
subclass of: SO_0000673
so part of: CYG50_RS00380
location: complement(14667..15251)
location: region:14667-15251:-1
so has part: feature:14667-15251:-1:exon

WP_001137892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14667-15251:-1:exon

CYG50_RS00385
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
alternative label: mrx
gene: mrx(A)
locus tag: CYG50_RS00385
old locus tag: CYG50_00385
gene synonym: mrx
so part of: sequence
location: complement(15197..16489)
location: region:15197-16489:-1
so has part: feature:15197-16489:-1:exon
subclass of: SO_0000010

position:15197:-1
position: 15197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16489:-1
position: 16489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15197-16489:-1:exon

CYG50_RS00385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
alternative label: mrx
gene: mrx(A)
locus tag: CYG50_RS00385
old locus tag: CYG50_00385
gene synonym: mrx
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000004159.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: macrolide resistance MFS transporter Mrx(A)
translation: MSERRYSPLATLFAATFLFRIGNAVAALALPWFVLSHTKSAAWAGATAASSVIATIIGAWVGGGLVDRFGRAPVALISGVVGGVAMASIPLLDAVGALSNTGLIACVVLGAAFDAPGMAAQDSELPKLGHVAGLSVERVSSLKAVIGNVAILGGPALGGAAIGLLGAAPTLGLTAFCSVLAGLLGAWVLPARAARTMTTTATLSMRAGVAFLWSEPLLRPLFGIVMIFVGIVGANGSVIMPALFVDAGRQVAELGLFSSMMGAGGLLGIAIHASVGARISAQNWLAVAFCGSAVGSLLLSQLPGVPVLMLLGALVGLLTGSVSPILNAAIYNRTPPELLGRVLGTVSAVMLSASPMVMLAAGAFVDLAGPLPGLVVSAVFAGLVALLSLRLQFATMAAAATASAPTHTEGEHWCPAPSSSPMTRYSRPPP
SIO_010081: CYG50_RS00385
subclass of: SO_0000673
so part of: CYG50_RS00385
location: complement(15197..16489)
location: region:15197-16489:-1
so has part: feature:15197-16489:-1:exon

WP_282559463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15197-16489:-1:exon

CYG50_RS00390
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00390
old locus tag: CYG50_00390
pseudo: true
so part of: sequence
location: complement(<16489..17391)
location: region:16489-17391:-1
so has part: feature:16489-17391:-1:exon
subclass of: SO_0000010

position:17391:-1
position: 17391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16489-17391:-1:exon

CYG50_RS00390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00390
old locus tag: CYG50_00390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000219391.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 4
product: Mph(A) family macrolide 2'-phosphotransferase
SIO_010081: CYG50_RS00390
subclass of: SO_0000673
so part of: CYG50_RS00390
location: complement(<16489..17391)
location: region:16489-17391:-1
so has part: feature:16489-17391:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16489-17391:-1:exon

CYG50_RS00395
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00395
old locus tag: CYG50_22890
so part of: sequence
location: 17837..18109
location: region:17837-18109:1
so has part: feature:17837-18109:1:exon
subclass of: SO_0000010

position:17837:1
position: 17837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18109:1
position: 18109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17837-18109:1:exon

CYG50_RS00395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00395
old locus tag: CYG50_22890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHADQGEWKLRQWPADSWKDSTVEVIANTASGGSDSPATHPVKGRDTTGIALQVSQGPWGTARETRRPMQSTVVVNGKVFAPTGIRRDAP
SIO_010081: CYG50_RS00395
subclass of: SO_0000673
so part of: CYG50_RS00395
location: 17837..18109
location: region:17837-18109:1
so has part: feature:17837-18109:1:exon

WP_282559464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17837-18109:1:exon

CYG50_RS00400
type: Gene
subclass of: SO_0000704
RO_0002162: 2027290
locus tag: CYG50_RS00400
old locus tag: CYG50_00400
so part of: sequence
location: 18488..18730
location: region:18488-18730:1
so has part: feature:18488-18730:1:exon
subclass of: SO_0000010

position:18488:1
position: 18488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18730:1
position: 18730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18488-18730:1:exon

CYG50_RS00400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2027290
locus tag: CYG50_RS00400
old locus tag: CYG50_00400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016349635.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHPREFIAKHIKATLEKEEFPPHAVSLGVKEATFFFDRTPSFAKGKVFDECLKAARAVARVAKKAKPWSGERVISQQRGE
SIO_010081: CYG50_RS00400
subclass of: SO_0000673
so part of: CYG50_RS00400
location: 18488..18730
location: region:18488-18730:1
so has part: feature:18488-18730:1:exon

WP_282551112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18488-18730:1:exon