Paraburkholderia aromaticivorans strain BN5 plasmid pBN5, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Identification and genetic characteristics of simultaneous BTEX- and naphthalene-degrading Paraburkholderia sp. BN5 isolated from petroleum-contaminated soil
Submitted (16-AUG-2017) Life Science, Chung-Ang University, 84 HeukSeok-Ro, Dongjak-Gu, Seoul 06974, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP022995.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 97.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:56:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,144\nCDSs (total) :: 8,058\nGenes (coding) :: 7,860\nCDSs (with protein) :: 7,860\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 198\nCDSs (without protein) :: 198\nPseudo Genes (ambiguous residues) :: 0 of 198\nPseudo Genes (frameshifted) :: 61 of 198\nPseudo Genes (incomplete) :: 157 of 198\nPseudo Genes (internal stop) :: 29 of 198\nPseudo Genes (multiple problems) :: 38 of 198\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paraburkholderia aromaticivorans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011546597.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007182935.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182936.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182937.1
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF041289.1
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019399556.1
COORDINATES: protein motif:HMM:NF019069.2
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_004636892.1
COORDINATES: similar to AA sequence:RefSeq:WP_010206255.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182946.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546594.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182951.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004527387.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182957.1
COORDINATES: protein motif:HMM:NF025226.2
GO:0005515 - protein binding [Evidence IEA]
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182918.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012487177.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_007247377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493490.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011046795.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390856.1
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_007182926.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737252.1
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_019692593.1