Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Identification and genetic characteristics of simultaneous BTEX- and naphthalene-degrading Paraburkholderia sp. BN5 isolated from petroleum-contaminated soil
Submitted (16-AUG-2017) Life Science, Chung-Ang University, 84 HeukSeok-Ro, Dongjak-Gu, Seoul 06974, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP022992.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 97.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:56:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,144\nCDSs (total) :: 8,058\nGenes (coding) :: 7,860\nCDSs (with protein) :: 7,860\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 198\nCDSs (without protein) :: 198\nPseudo Genes (ambiguous residues) :: 0 of 198\nPseudo Genes (frameshifted) :: 61 of 198\nPseudo Genes (incomplete) :: 157 of 198\nPseudo Genes (internal stop) :: 29 of 198\nPseudo Genes (multiple problems) :: 38 of 198\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paraburkholderia aromaticivorans
COORDINATES: similar to AA sequence:RefSeq:WP_014194261.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018420534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007587220.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006999308.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019486675.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194277.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760821.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582524.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012760822.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760823.1
COORDINATES: protein motif:HMM:NF022224.2
COORDINATES: similar to AA sequence:RefSeq:WP_012760825.1
COORDINATES: similar to AA sequence:RefSeq:WP_012969423.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017113199.1
COORDINATES: similar to AA sequence:RefSeq:WP_004541851.1
COORDINATES: similar to AA sequence:RefSeq:WP_011666578.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015876359.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630680.1
COORDINATES: protein motif:HMM:NF012403.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011831694.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876187.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629953.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629956.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629963.1
COORDINATES: similar to AA sequence:RefSeq:WP_007587329.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004629967.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011875612.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310013.1
Tn3 family transposase post-transcriptional regulator TnpC
COORDINATES: similar to AA sequence:RefSeq:WP_007578106.1
COORDINATES: similar to AA sequence:RefSeq:WP_007180429.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_011229340.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015242586.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007179637.1
COORDINATES: similar to AA sequence:RefSeq:WP_009687816.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009687815.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017775809.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295951.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798165.1
COORDINATES: similar to AA sequence:RefSeq:WP_019466177.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182846.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182847.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182848.1
COORDINATES: similar to AA sequence:RefSeq:WP_017328836.1
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: similar to AA sequence:RefSeq:WP_007182849.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018992669.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182851.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182852.1
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875669.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182857.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182859.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182860.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006416128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876037.1
COORDINATES: similar to AA sequence:RefSeq:WP_004871620.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008460339.1
COORDINATES: similar to AA sequence:RefSeq:WP_011483413.1
COORDINATES: similar to AA sequence:RefSeq:WP_011483414.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008616971.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822482.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343290.1
COORDINATES: similar to AA sequence:RefSeq:WP_013339604.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_011875643.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875644.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029257.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420329.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194242.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF016974.2
aspartyl/asparaginyl beta-hydroxylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346414.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015379003.1
COORDINATES: protein motif:HMM:NF037360.2
COORDINATES: similar to AA sequence:RefSeq:WP_010089222.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_009771033.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700273.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217754.1
COORDINATES: similar to AA sequence:RefSeq:WP_010120573.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_009941095.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_015878119.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006297437.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020175367.1
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_000516586.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700277.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875468.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700279.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700280.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF022458.2
COORDINATES: protein motif:HMM:NF023352.2
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630160.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630167.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630170.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630171.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630173.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630177.1
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630180.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630181.1
COORDINATES: protein motif:HMM:NF039495.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630190.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630193.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630195.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630197.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630200.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630201.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630204.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630205.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630207.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630212.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012732736.1
IS21-like element ISBmu3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012213865.1
IS21-like element ISBmu3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004194230.1
Catalyzes the rate-limiting step in dNTP synthesis; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF005550.0
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004630312.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630314.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630316.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354629.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536794.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630318.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630319.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004630325.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630332.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_004630333.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630336.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760805.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630339.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630341.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630343.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630345.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630346.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630349.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004630350.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630359.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630364.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630365.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630367.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630368.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630372.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630373.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630375.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011355954.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004630386.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630389.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645421.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630616.1
COORDINATES: similar to AA sequence:RefSeq:WP_023098450.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013094586.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438758.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757607.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330546.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366377.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006757604.1
COORDINATES: similar to AA sequence:RefSeq:WP_019256313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991720.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017329892.1
cbb3-type cytochrome c oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_017329891.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_007930624.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241731.1
COORDINATES: similar to AA sequence:RefSeq:WP_013833427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516321.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094450.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761200.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761201.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018418792.1
flagellar transcriptional regulator FlhC
COORDINATES: similar to AA sequence:RefSeq:WP_004630581.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012401244.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917785.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430973.1
COORDINATES: similar to AA sequence:RefSeq:WP_013966328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008642084.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018418395.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_013691872.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012431038.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611267.1
IS5-like element ISRme6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014253113.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630697.1
COORDINATES: similar to AA sequence:RefSeq:WP_007740902.1
COORDINATES: protein motif:HMM:NF014664.2
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008917442.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020070187.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006009535.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011488437.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488436.1
aerobic carbon-monoxide dehydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011488435.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493220.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488433.1
COORDINATES: similar to AA sequence:RefSeq:WP_020204311.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917450.1
COORDINATES: similar to AA sequence:RefSeq:WP_009665188.1
COORDINATES: similar to AA sequence:RefSeq:WP_018912648.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356505.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771361.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007176290.1
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0008152 - metabolic process [Evidence IEA]; GO:0009853 - photorespiration [Evidence IEA]
PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (PF00702); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011883251.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_017522677.1
COORDINATES: similar to AA sequence:RefSeq:WP_017849281.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014161712.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF013062.2
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011765576.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011301795.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017524097.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020162778.1
COORDINATES: similar to AA sequence:RefSeq:WP_012590498.1
GO:0019439 - aromatic compound catabolic process [Evidence IEA]; GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004255583.1
COORDINATES: similar to AA sequence:RefSeq:WP_003066646.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397649.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011875731.1
COORDINATES: similar to AA sequence:RefSeq:WP_011797809.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_012430577.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011875734.1
GO:0047437 - 4-oxalocrotonate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017775866.1
GO:0016862 - intramolecular oxidoreductase activity, interconverting keto- and enol-groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006408393.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182917.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025178.2
COORDINATES: similar to AA sequence:RefSeq:WP_015929023.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010322190.1
COORDINATES: similar to AA sequence:RefSeq:WP_017939045.1
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_086558169.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049861.1
aromatic acid/H+ symport family MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012405313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015005305.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006655473.1
COORDINATES: similar to AA sequence:RefSeq:WP_015005300.1
COORDINATES: similar to AA sequence:RefSeq:WP_015005303.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
non-oxidative hydroxyarylic acid decarboxylases subunit C
COORDINATES: protein motif:HMM:NF041205.1
non-oxidative hydroxyarylic acid decarboxylases subunit D
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: similar to AA sequence:RefSeq:WP_020656898.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0106141 - flavin prenyltransferase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011493645.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611734.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611261.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007740589.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558343.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018437347.1
ribulose-bisphosphate carboxylase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020066342.1
ribulose bisphosphate carboxylase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018437346.1
COORDINATES: similar to AA sequence:RefSeq:WP_007186400.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590479.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008974 - phosphoribulokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011490908.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590477.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011490910.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006397378.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020041418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875722.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516096.1
aromatic/alkene monooxygenase hydroxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014900550.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516094.1
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011516093.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397645.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011516091.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516089.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516088.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875732.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008064268.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516081.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018989564.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430595.1
COORDINATES: similar to AA sequence:RefSeq:WP_004264354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516077.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801859.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003292076.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301780.1
aromatic hydrocarbon degradation protein
COORDINATES: similar to AA sequence:RefSeq:WP_019451477.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_011875737.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013123192.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611586.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583991.1
COORDINATES: protein motif:HMM:NF014898.2
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154075.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190257.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344801.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344798.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194161.1
COORDINATES: similar to AA sequence:RefSeq:NP_858152.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009769829.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612098.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014358964.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612051.1
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611487.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_005880504.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006157051.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_008211479.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013263485.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
COORDINATES: similar to AA sequence:RefSeq:WP_006492556.1
COORDINATES: similar to AA sequence:RefSeq:WP_013983181.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_012431197.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611473.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_012355561.1
COORDINATES: similar to AA sequence:RefSeq:WP_018443790.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004544985.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771101.1
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
lipid A biosynthesis lauroyl acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020647928.1
COORDINATES: similar to AA sequence:RefSeq:WP_019574237.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011830407.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011153930.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_018904268.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_011153932.1
COORDINATES: similar to AA sequence:RefSeq:WP_018227499.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_020162830.1
COORDINATES: protein motif:HMM:NF023365.2
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: protein motif:HMM:NF012592.2
GO:0016151 - nickel cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008063447.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_012347466.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_011830396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880076.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011516280.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_011153944.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020162847.1
COORDINATES: similar to AA sequence:RefSeq:WP_019915998.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493225.1
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020734846.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_086558108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516073.1
COORDINATES: similar to AA sequence:RefSeq:WP_019576567.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011801837.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009550743.1
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_011475384.1
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011801861.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011475381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117403.1
COORDINATES: similar to AA sequence:RefSeq:WP_014819636.1
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003292055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801867.1
COORDINATES: similar to AA sequence:RefSeq:WP_026437497.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012345831.1
COORDINATES: similar to AA sequence:RefSeq:WP_014819639.1
COORDINATES: similar to AA sequence:RefSeq:WP_014861925.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779117.1
COORDINATES: protein motif:HMM:NF024954.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_012426094.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013665.2
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011875878.1