Bacillus nitratireducens strain BM02 plasmid pBM02-3, complete sequence.
type: Entry
definition: Bacillus nitratireducens strain BM02 plasmid pBM02-3, complete sequence.
sequence version: NZ_CP047369.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP047369.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13705136
keyword: RefSeq
source: Bacillus nitratireducens
organism: Bacillus nitratireducens
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP047369.1.\nBacteria and source DNA available from Microbial Genomics, National\nChung Hsing University and Academia Sinica, No. 145, Xingda Rd.,\nTaichung 40227, Taiwan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-FEB-2019\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 155.0x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 05:16:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,679\nCDSs (total) :: 5,538\nGenes (coding) :: 5,299\nCDSs (with protein) :: 5,299\nGenes (RNA) :: 141\nrRNAs :: 13, 13, 13 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 13, 13 (5S, 16S, 23S)\ntRNAs :: 97\nncRNAs :: 5\nPseudo Genes (total) :: 239\nCDSs (without protein) :: 239\nPseudo Genes (ambiguous residues) :: 0 of 239\nPseudo Genes (frameshifted) :: 98 of 239\nPseudo Genes (incomplete) :: 136 of 239\nPseudo Genes (internal stop) :: 69 of 239\nPseudo Genes (multiple problems) :: 55 of 239\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8847
topology: circular
so has quality: SO_0000988
location: 1..8847
location: region:1-8847:1
RO_0002162: 2026193

NZ_CP047369
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13705136
type: BioSample
SIO_000068: biosample

1
title: Two volatile acids produced by Bacillus mycoides BM02 contributing to the suppression of Fusarium wilt disease in tomato
author: Wu, J.-J.
author: Huang, J.-W.
author: Deng, W.-L.
journal: Unpublished

2
title: Direct Submission
author: Wu, J.-J.
author: Huang, J.-W.
author: Deng, W.-L.
journal: Submitted (01-JAN-2020) Microbial Genomics, National Chung Hsing University and Academia Sinica, No. 145, Xingda Rd., Taichung 40227, Taiwan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8847:1
position: 8847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8847:1:source
so part of: sequence
organism: Bacillus nitratireducens
mol type: genomic DNA
strain: BM02
isolation source: Rhizosphere
host: Solanum lycopersicum L.
plasmid: pBM02-3
country: Taiwan: Taichung city
collection date: 2006-07

2026193
type: Taxonomy
SIO_000068: taxonomy

GSN03_RS28120
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28120
old locus tag: GSN03_27885
so part of: sequence
location: 305..850
location: region:305-850:1
so has part: feature:305-850:1:exon
subclass of: SO_0000010

position:305:1
position: 305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:850:1
position: 850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305-850:1:exon

GSN03_RS28120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28120
old locus tag: GSN03_27885
EC number: 2.3.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008497340.1
GO function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MLIHKIDEEVSLRIFNEGDAEEFYNLIISSKSYLKEWLGWIDYIKSPEDTVKNIKARLKEFMENGGYPKSFAIIYKGNIAGTIGFNDINKTNKLGIVGYWLGENFQGEGIMTKSLKALIDYGFKELELNKIEVSVAVENKKSRALPERFGFVEEGKLRQAEWLYDHYVDHVIYGLLAAEWK
SIO_010081: GSN03_RS28120
subclass of: SO_0000673
so part of: GSN03_RS28120
location: 305..850
location: region:305-850:1
so has part: feature:305-850:1:exon

WP_212092082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:305-850:1:exon

GSN03_RS28125
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28125
old locus tag: GSN03_27890
so part of: sequence
location: complement(1015..1368)
location: region:1015-1368:-1
so has part: feature:1015-1368:-1:exon
subclass of: SO_0000010

position:1015:-1
position: 1015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1368:-1
position: 1368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1015-1368:-1:exon

GSN03_RS28125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28125
old locus tag: GSN03_27890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001172069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4260 domain-containing protein
translation: MIKTILNIEGLFVLFLSTFIYFYHYNFSLMWFLILLLAPDISALGYIVNLRTGATLYNIFHSYILPILCIILGMLFTNNITIMLGLIWTAHIGMDRILGYGLKYNNSFKETHLQKLT
SIO_010081: GSN03_RS28125
subclass of: SO_0000673
so part of: GSN03_RS28125
location: complement(1015..1368)
location: region:1015-1368:-1
so has part: feature:1015-1368:-1:exon

WP_212092083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1015-1368:-1:exon

GSN03_RS28130
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28130
old locus tag: GSN03_27895
so part of: sequence
location: 1826..2386
location: region:1826-2386:1
so has part: feature:1826-2386:1:exon
subclass of: SO_0000010

position:1826:1
position: 1826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2386:1
position: 2386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1826-2386:1:exon

GSN03_RS28130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28130
old locus tag: GSN03_27895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018783718.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MELKSEMYTPKIVADRLGVTPDLLKVWSNEFNIQTERSQGGHRRYSKENIEELTAIKEKIQVQKWSYDQVRAWRNGELDSFVSKEEKSELEKKLDEVLENQQLQNQFNQALVQKLQEITNELVTTKEHLVNTEKKLTEVESKNNELEVFIEKKLEKRDQLLLENIRDMQKQNQKQKRRGFFGLFKN
SIO_010081: GSN03_RS28130
subclass of: SO_0000673
so part of: GSN03_RS28130
location: 1826..2386
location: region:1826-2386:1
so has part: feature:1826-2386:1:exon

WP_212092084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1826-2386:1:exon

GSN03_RS28135
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28135
old locus tag: GSN03_27900
so part of: sequence
location: complement(2569..3195)
location: region:2569-3195:-1
so has part: feature:2569-3195:-1:exon
subclass of: SO_0000010

position:2569:-1
position: 2569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3195:-1
position: 3195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2569-3195:-1:exon

GSN03_RS28135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28135
old locus tag: GSN03_27900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018764034.1
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
GO process: GO:0008610 - lipid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CmcI family methyltransferase
translation: MNNYIDQTHIHYYNSEVWAHGNTKWLGYPVMKYPSDLFLYQEIIYETQPDIIIECGTFNGGSSLFLCSMLDLINKGTVLSIDIAPQANLPTHKRLSYLKTSSTSELALQTVKNTISPEDTVLIILDSDHTKTHVLQELQLYHSFVTQGSYLIVEDTNINGHPVLPKFGPGPMEAVEEFLQNNNDYIIDETKHKFLISFNPKGYLKKIK
SIO_010081: GSN03_RS28135
subclass of: SO_0000673
so part of: GSN03_RS28135
location: complement(2569..3195)
location: region:2569-3195:-1
so has part: feature:2569-3195:-1:exon

WP_212092085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2569-3195:-1:exon

GSN03_RS28140
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28140
old locus tag: GSN03_27905
so part of: sequence
location: complement(3766..4152)
location: region:3766-4152:-1
so has part: feature:3766-4152:-1:exon
subclass of: SO_0000010

position:3766:-1
position: 3766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4152:-1
position: 4152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3766-4152:-1:exon

GSN03_RS28140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28140
old locus tag: GSN03_27905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000135753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: spore coat protein
translation: MATFEIGARCLFNFRNERFFLLVEDEIEVPDKGVELDPLNIYEIDQQTFEFIRDEGDTNVCEPVITLPTVPPGFHLERKCIFTVDNAYWAIYELEDGTDEIVILIISAALFNSLRNSGVHQCVPQNLI
SIO_010081: GSN03_RS28140
subclass of: SO_0000673
so part of: GSN03_RS28140
location: complement(3766..4152)
location: region:3766-4152:-1
so has part: feature:3766-4152:-1:exon

WP_078175242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3766-4152:-1:exon

GSN03_RS28145
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28145
old locus tag: GSN03_27910
so part of: sequence
location: 6098..7564
location: region:6098-7564:1
so has part: feature:6098-7564:1:exon
subclass of: SO_0000010

position:6098:1
position: 6098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7564:1
position: 7564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6098-7564:1:exon

GSN03_RS28145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28145
old locus tag: GSN03_27910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000901551.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MLFSISFNQSHQSSLSHNNRENIYGNPGIDLSRLDENIYFVQKDIQSVYKDVFQEAVDKYNEKQKRNDRKIQDYYDKIHKNEKTHEQRELVVAVGEGKDDPKYREAKKEALKQYAEAFQGRNPNLAVYNMVLHDDEANPHLHINYVPHFESSRGLTRRVGMDRALQQQGAQGKGTELIANWRQLETAYIESLAKKHIPEFERANVGSHKYMKVRQYKEYAETKSIVENQVQEKEMQLQTIDHNLKNVEEKTNELQVVKKSLESDVVDKYKELEVVKQQVESESEKLQLIGQCHIELEKRVEQMQKELDSATDQVPNEPVKIPFLRKEVVVEVQDKMFGKAEITKKQTRNYVLSPEQYQELTKQVNAAVTIKKDYERLKKTDFVKENEGLKVHAEGWMEENRTLKQEKNQLQKEVGVLNREISSLEAYIKDLKTNIRVLYVQTKKVFKEKFKAFRGIVKNELDSKGIDNQFEREHKKEMNKHRGFDMER
SIO_010081: GSN03_RS28145
subclass of: SO_0000673
so part of: GSN03_RS28145
location: 6098..7564
location: region:6098-7564:1
so has part: feature:6098-7564:1:exon

WP_212092078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6098-7564:1:exon

GSN03_RS28150
type: Gene
subclass of: SO_0000704
RO_0002162: 2026193
locus tag: GSN03_RS28150
old locus tag: GSN03_27915
so part of: sequence
location: 7782..8459
location: region:7782-8459:1
so has part: feature:7782-8459:1:exon
subclass of: SO_0000010

position:7782:1
position: 7782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8459:1
position: 8459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7782-8459:1:exon

GSN03_RS28150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026193
locus tag: GSN03_RS28150
old locus tag: GSN03_27915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001001385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rep protein
translation: MNEELGQALNQADRNARKRDFEKDGKQRDQAEELKKSLLQQLKELTGEDHYVGTNKDPFAGEPFNQVMHRNLDLLNSIGYLTQAEESFLFRIQAYLEFRSNVIICRDDKFKKKRKSAEEDFELPKAATVSEIAEMIGKSREKTSLVMNSLKKKEILLNPEGAGQIIENGRTVSPRTWVVNPYIMICAPRKNEVKLDKLTMRLFQYSLKNLKDQNGKKVKLPARFF
SIO_010081: GSN03_RS28150
subclass of: SO_0000673
so part of: GSN03_RS28150
location: 7782..8459
location: region:7782-8459:1
so has part: feature:7782-8459:1:exon

WP_212092080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7782-8459:1:exon