Bacillus luti strain FJ plasmid unnamed3, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
Submitted (09-MAY-2019) College of Fisheries and Life Sciences, Dalian Ocean University, Heishijiao, Dalian 116023, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP040339.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. Aug-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:58:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,444\nCDSs (total) :: 5,291\nGenes (coding) :: 5,121\nCDSs (with protein) :: 5,121\nGenes (RNA) :: 153\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 106\nncRNAs :: 5\nPseudo Genes (total) :: 170\nCDSs (without protein) :: 170\nPseudo Genes (ambiguous residues) :: 0 of 170\nPseudo Genes (frameshifted) :: 80 of 170\nPseudo Genes (incomplete) :: 97 of 170\nPseudo Genes (internal stop) :: 27 of 170\nPseudo Genes (multiple problems) :: 27 of 170\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016128138.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002187896.1
COORDINATES: protein motif:HMM:NF014543.2
COORDINATES: similar to AA sequence:RefSeq:WP_001097732.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_000718639.1
COORDINATES: similar to AA sequence:RefSeq:WP_020424520.1
COORDINATES: similar to AA sequence:RefSeq:WP_000575732.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002194831.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016513775.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000475297.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016084082.1
COORDINATES: similar to AA sequence:RefSeq:WP_000222795.1
COORDINATES: similar to AA sequence:RefSeq:WP_016514171.1
COORDINATES: similar to AA sequence:RefSeq:WP_002204169.1
COORDINATES: similar to AA sequence:RefSeq:WP_016130500.1
COORDINATES: similar to AA sequence:RefSeq:WP_000186251.1
COORDINATES: similar to AA sequence:RefSeq:WP_016114534.1
iron-sulfur cluster biosynthesis family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002202385.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018781352.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:NP_390455.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012094087.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016107121.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000405933.1
arsinothricin resistance N-acetyltransferase ArsN1 family A
COORDINATES: similar to AA sequence:RefSeq:WP_000658825.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000236375.1
COORDINATES: similar to AA sequence:RefSeq:WP_000802657.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016117812.1
COORDINATES: similar to AA sequence:RefSeq:WP_003204914.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000354585.1
COORDINATES: similar to AA sequence:RefSeq:WP_002114659.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000272612.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_016128163.1
COORDINATES: similar to AA sequence:RefSeq:WP_016093721.1
COORDINATES: similar to AA sequence:RefSeq:WP_016131615.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001137381.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084105.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084104.1
COORDINATES: similar to AA sequence:RefSeq:WP_016100255.1
COORDINATES: similar to AA sequence:RefSeq:WP_000766211.1
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0009847 - spore germination [Evidence IEA]
Ger(x)C family spore germination protein
COORDINATES: similar to AA sequence:RefSeq:WP_001255449.1
GO:0009847 - spore germination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001190587.1
COORDINATES: similar to AA sequence:RefSeq:WP_000383890.1
COORDINATES: similar to AA sequence:RefSeq:WP_001226074.1
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018767273.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000734949.1