Bacillus luti strain FJ plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
Submitted (09-MAY-2019) College of Fisheries and Life Sciences, Dalian Ocean University, Heishijiao, Dalian 116023, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP040337.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. Aug-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:58:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,444\nCDSs (total) :: 5,291\nGenes (coding) :: 5,121\nCDSs (with protein) :: 5,121\nGenes (RNA) :: 153\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 106\nncRNAs :: 5\nPseudo Genes (total) :: 170\nCDSs (without protein) :: 170\nPseudo Genes (ambiguous residues) :: 0 of 170\nPseudo Genes (frameshifted) :: 80 of 170\nPseudo Genes (incomplete) :: 97 of 170\nPseudo Genes (internal stop) :: 27 of 170\nPseudo Genes (multiple problems) :: 27 of 170\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002078694.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002078696.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000808963.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000715236.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_001259326.1
COORDINATES: similar to AA sequence:RefSeq:WP_002078709.1
COORDINATES: similar to AA sequence:RefSeq:WP_002078710.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000698742.1
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: similar to AA sequence:RefSeq:WP_000611503.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017154367.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000618013.1
COORDINATES: similar to AA sequence:RefSeq:WP_000343652.1
COORDINATES: similar to AA sequence:RefSeq:WP_002078382.1
COORDINATES: similar to AA sequence:RefSeq:WP_002078242.1
COORDINATES: similar to AA sequence:RefSeq:WP_000462486.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]