Bacillus tropicus strain AOA-CPS1 plasmid pBClin15.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.
Whole-genome sequencing, genome mining, metabolic reconstruction and evolution of pentachlorophenol and other xenobiotic degradation pathways in Bacillus tropicus strain AOA-CPS1
Submitted (02-DEC-2019) Microbiology, University of KwaZulu Natal, University Road, Durban, KwaZulu-Natal 4091, South Africa
REFSEQ INFORMATION: The reference sequence is identical to\nCP049020.1.\nBacteria and source DNA available from Prof. Ademola Olaniran,\nDepatt. of Microbiology, School of Life Science, University of\nKwaZulu Natal, Westville, Durban, South Africa.\nChromosome and plasmid not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-OCT-2019\nAssembly Method :: FALCON v. SMRT Link Version\t7.0.1.66975\nAssembly Name :: BcAOACPS\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/09/2022 23:49:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,484\nCDSs (total) :: 5,332\nGenes (coding) :: 5,199\nCDSs (with protein) :: 5,199\nGenes (RNA) :: 152\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 5\nPseudo Genes (total) :: 133\nCDSs (without protein) :: 133\nPseudo Genes (ambiguous residues) :: 0 of 133\nPseudo Genes (frameshifted) :: 63 of 133\nPseudo Genes (incomplete) :: 72 of 133\nPseudo Genes (internal stop) :: 40 of 133\nPseudo Genes (multiple problems) :: 34 of 133\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_016513740.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018767902.1
COORDINATES: similar to AA sequence:RefSeq:WP_000627312.1
COORDINATES: similar to AA sequence:RefSeq:WP_000884749.1
COORDINATES: similar to AA sequence:RefSeq:WP_000487933.1
COORDINATES: similar to AA sequence:RefSeq:WP_016513744.1
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002162398.1
COORDINATES: similar to AA sequence:RefSeq:WP_000337745.1
COORDINATES: similar to AA sequence:RefSeq:WP_000124861.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000811979.1
COORDINATES: similar to AA sequence:RefSeq:WP_000776933.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
deoxyuridine 5'-triphosphate nucleotidohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_000140899.1
COORDINATES: similar to AA sequence:RefSeq:WP_016119073.1
COORDINATES: similar to AA sequence:RefSeq:WP_000522783.1
COORDINATES: similar to AA sequence:RefSeq:WP_016079004.1
ArpU family phage packaging/lysis transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002169433.1
COORDINATES: similar to AA sequence:RefSeq:WP_000376553.1
COORDINATES: similar to AA sequence:RefSeq:WP_002101837.1
COORDINATES: similar to AA sequence:RefSeq:WP_002084603.1
COORDINATES: similar to AA sequence:RefSeq:WP_002084604.1
COORDINATES: similar to AA sequence:RefSeq:WP_000428653.1
COORDINATES: similar to AA sequence:RefSeq:WP_016136487.1
GO:0051276 - chromosome organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002176051.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_001995603.1
COORDINATES: similar to AA sequence:RefSeq:WP_001995617.1
COORDINATES: similar to AA sequence:RefSeq:WP_000746380.1
XkdF-like putative serine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001995604.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016128360.1
COORDINATES: similar to AA sequence:RefSeq:WP_001995619.1
COORDINATES: similar to AA sequence:RefSeq:WP_000058076.1
COORDINATES: similar to AA sequence:RefSeq:WP_000168162.1
COORDINATES: similar to AA sequence:RefSeq:WP_000273212.1
COORDINATES: similar to AA sequence:RefSeq:WP_000852141.1
phage major tail protein, TP901-1 family
COORDINATES: similar to AA sequence:RefSeq:WP_001210040.1
COORDINATES: similar to AA sequence:RefSeq:WP_000424144.1
COORDINATES: similar to AA sequence:RefSeq:WP_000235293.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000383068.1
COORDINATES: similar to AA sequence:RefSeq:WP_000289462.1
COORDINATES: similar to AA sequence:RefSeq:WP_000331441.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001985731.1
BppU family phage baseplate upper protein
COORDINATES: similar to AA sequence:RefSeq:WP_001152009.1
COORDINATES: similar to AA sequence:RefSeq:WP_000373867.1
COORDINATES: similar to AA sequence:RefSeq:WP_000405801.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
N-acetylmuramoyl-L-alanine amidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000923399.1
COORDINATES: similar to AA sequence:RefSeq:WP_001985713.1
COORDINATES: similar to AA sequence:RefSeq:WP_016090036.1
COORDINATES: similar to AA sequence:RefSeq:WP_016513775.1
COORDINATES: similar to AA sequence:RefSeq:WP_000467344.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001992117.1
COORDINATES: similar to AA sequence:RefSeq:WP_000511369.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016513387.1
COORDINATES: similar to AA sequence:RefSeq:WP_000538262.1
COORDINATES: similar to AA sequence:RefSeq:WP_002194832.1
COORDINATES: similar to AA sequence:RefSeq:WP_000428554.1
COORDINATES: similar to AA sequence:RefSeq:WP_000030445.1
COORDINATES: similar to AA sequence:RefSeq:WP_000036993.1
COORDINATES: similar to AA sequence:RefSeq:WP_001995759.1
COORDINATES: similar to AA sequence:RefSeq:WP_000394434.1
COORDINATES: similar to AA sequence:RefSeq:WP_016084107.1
COORDINATES: similar to AA sequence:RefSeq:WP_000565398.1
COORDINATES: similar to AA sequence:RefSeq:WP_000473819.1
COORDINATES: similar to AA sequence:RefSeq:WP_000722940.1
COORDINATES: similar to AA sequence:RefSeq:WP_000451519.1
COORDINATES: similar to AA sequence:RefSeq:WP_016083528.1
COORDINATES: similar to AA sequence:RefSeq:WP_000859167.1
COORDINATES: similar to AA sequence:RefSeq:WP_001148507.1
AimR family lysis-lysogeny pheromone receptor
COORDINATES: similar to AA sequence:RefSeq:WP_000721629.1
COORDINATES: similar to AA sequence:RefSeq:WP_000142633.1
COORDINATES: similar to AA sequence:RefSeq:WP_018767896.1
COORDINATES: similar to AA sequence:RefSeq:WP_001072782.1
phage antirepressor KilAC domain-containing protein