Thermoactinomyces vulgaris strain 2H plasmid pTvu19, complete sequence.
type: Entry
definition: Thermoactinomyces vulgaris strain 2H plasmid pTvu19, complete sequence.
sequence version: NZ_CP039711.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP039711.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11483338
keyword: RefSeq
source: Thermoactinomyces vulgaris
organism: Thermoactinomyces vulgaris
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Thermoactinomycetaceae; Thermoactinomyces.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP039711.1.\nBacteria and source DNA available from Houda Mankai\n(houda.mankai@googlemail.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 10-JUL-2018\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Tvu_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 328.15x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:17:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,758\nCDSs (total) :: 2,660\nGenes (coding) :: 2,623\nCDSs (with protein) :: 2,623\nGenes (RNA) :: 98\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 5\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 16 of 37\nPseudo Genes (incomplete) :: 25 of 37\nPseudo Genes (internal stop) :: 6 of 37\nPseudo Genes (multiple problems) :: 9 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18747
topology: circular
so has quality: SO_0000988
location: 1..18747
location: region:1-18747:1
RO_0002162: 2026

NZ_CP039711
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11483338
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris strain 2H
author: Fomenkov, A.
author: Mankai, H.
author: Anton, B.P.
author: Wu, V.
author: Vinzce, T.
author: Limam, F.
author: Roberts, R.J.
journal: Unpublished

2
title: Direct Submission
author: Fomenkov, A.
author: Mankai, H.
author: Anton, B.P.
author: Wu, V.
author: Vinzce, T.
author: Limam, F.
author: Roberts, R.J.
journal: Submitted (23-APR-2019) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18747:1
position: 18747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18747:1:source
so part of: sequence
organism: Thermoactinomyces vulgaris
mol type: genomic DNA
strain: 2H
isolation source: soil
plasmid: pTvu19
country: Tunisia
collection date: 2008

2026
type: Taxonomy
SIO_000068: taxonomy

FA954_RS13440
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13440
old locus tag: FA954_13445
so part of: sequence
location: complement(join(18245..18747,1..16))
location: region:1-18747:-1
so has part: feature:1-16:-1:exon
so has part: feature:18245-18747:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18747:-1
position: 18747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-16:-1:exon

position:16:-1
position: 16
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18245-18747:-1:exon

position:18245:-1
position: 18245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FA954_RS13440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13440
old locus tag: FA954_13445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MNNFEIKEAKEAISLGLDIARRNNLPRRASDLALAAGDMYQAQNESKLAERCYQQALSFHSTIRVHNKFGIFHLKQKDFAQAADHFQKALGMKGSRSEHIDALIGLGKSYLLQGKRSEAISHLKRAENLAEDMREKIHEISALLATAFEGIDMESRMHYLEKVNQIHMEALA
SIO_010081: FA954_RS13440
subclass of: SO_0000673
so part of: FA954_RS13440
location: complement(join(18245..18747,1..16))
location: region:1-18747:-1
so has part: feature:1-16:-1:exon
so has part: feature:18245-18747:-1:exon

WP_037998471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-16:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18245-18747:-1:exon

FA954_RS13445
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13445
old locus tag: FA954_13450
so part of: sequence
location: complement(420..692)
location: region:420-692:-1
so has part: feature:420-692:-1:exon
subclass of: SO_0000010

position:420:-1
position: 420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:692:-1
position: 692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420-692:-1:exon

FA954_RS13445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13445
old locus tag: FA954_13450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDKLDLILEEIKGLSKKIDSLDQRVGNLESKFETLETKADAIQEMVASIAEDTTKIRINQDRQQTTMEKLALRSIEQEAELDRIKVNIS
SIO_010081: FA954_RS13445
subclass of: SO_0000673
so part of: FA954_RS13445
location: complement(420..692)
location: region:420-692:-1
so has part: feature:420-692:-1:exon

WP_037998472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:420-692:-1:exon

FA954_RS13450
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13450
old locus tag: FA954_13455
so part of: sequence
location: complement(707..1117)
location: region:707-1117:-1
so has part: feature:707-1117:-1:exon
subclass of: SO_0000010

position:707:-1
position: 707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1117:-1
position: 1117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707-1117:-1:exon

FA954_RS13450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13450
old locus tag: FA954_13455
inference: COORDINATES: protein motif:HMM:NF024252.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSNSFDSERLKQLREQRGWSQTDLAQKINVSKQTIHEYELGRKSPSREKLAALADLFNTSVDYLMGRTDVKEPINKLMKEIQSSSPNLIDIVTRSKPTIDGIPIDEETAKILYYQLKAFKEKLLAEMEEKKREISA
SIO_010081: FA954_RS13450
subclass of: SO_0000673
so part of: FA954_RS13450
location: complement(707..1117)
location: region:707-1117:-1
so has part: feature:707-1117:-1:exon

WP_175413227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:707-1117:-1:exon

FA954_RS13455
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13455
old locus tag: FA954_13460
so part of: sequence
location: 1261..1461
location: region:1261-1461:1
so has part: feature:1261-1461:1:exon
subclass of: SO_0000010

position:1261:1
position: 1261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1461:1
position: 1461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1261-1461:1:exon

FA954_RS13455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13455
old locus tag: FA954_13460
inference: COORDINATES: protein motif:HMM:NF024252.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKQFNIRAKRKELGYSLEVMARRVGISKQYLSDIEIGKKTPSLYVALKIASVLNGTVENFFGQESA
SIO_010081: FA954_RS13455
subclass of: SO_0000673
so part of: FA954_RS13455
location: 1261..1461
location: region:1261-1461:1
so has part: feature:1261-1461:1:exon

WP_138615228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1261-1461:1:exon

FA954_RS13775
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13775
so part of: sequence
location: 1507..1665
location: region:1507-1665:1
so has part: feature:1507-1665:1:exon
subclass of: SO_0000010

position:1507:1
position: 1507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1665:1
position: 1665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1507-1665:1:exon

FA954_RS13775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAFNDRGIVKFRIYRKGICCGWLTLEGLVKWMENQKKPTTGKVVSFRKRAK
SIO_010081: FA954_RS13775
subclass of: SO_0000673
so part of: FA954_RS13775
location: 1507..1665
location: region:1507-1665:1
so has part: feature:1507-1665:1:exon

WP_175413228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1507-1665:1:exon

FA954_RS13460
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13460
old locus tag: FA954_13465
so part of: sequence
location: 1712..2221
location: region:1712-2221:1
so has part: feature:1712-2221:1:exon
subclass of: SO_0000010

position:1712:1
position: 1712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2221:1
position: 2221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1712-2221:1:exon

FA954_RS13460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13460
old locus tag: FA954_13465
inference: COORDINATES: protein motif:HMM:NF016302.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ERF family protein
translation: MAGSIYQKIAKAMSNINRIPKRGYNSFHKYEYVLEADLLDHIRPILLEAGLVLIPTILEEEKNGEFTKVKMEFTVADVETGETIKSTFWGEGQDKNDKGLYKAYTGATKYFLKGPQQLKRPFHKEAKQKLICLIIPHQEGSGWEQFNWMQKTGRTKLHGGGFPLFLLCM
SIO_010081: FA954_RS13460
subclass of: SO_0000673
so part of: FA954_RS13460
location: 1712..2221
location: region:1712-2221:1
so has part: feature:1712-2221:1:exon

WP_175413229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1712-2221:1:exon

FA954_RS13465
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13465
old locus tag: FA954_13470
so part of: sequence
location: complement(2274..2873)
location: region:2274-2873:-1
so has part: feature:2274-2873:-1:exon
subclass of: SO_0000010

position:2274:-1
position: 2274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2873:-1
position: 2873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2274-2873:-1:exon

FA954_RS13465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13465
old locus tag: FA954_13470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000873695.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTVYGYARVSTSHQDINLQIDELNKYGCDVIYQEHVSGKSADERKELQKLLNTVQPGDKIVFTKLDRFARSTVDALNIANELNKKGVAMVVLNFGGMQVDVSTPTGKLMLTMFAGFAEFEREIMLERQRAGIERAKRAGKYKGRLKKYHDKHAGMKHAIKLFNEREQNGMTVKEICEITGVSRSALYREVERRKTPEII
SIO_010081: FA954_RS13465
subclass of: SO_0000673
so part of: FA954_RS13465
location: complement(2274..2873)
location: region:2274-2873:-1
so has part: feature:2274-2873:-1:exon

WP_037998492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2274-2873:-1:exon

FA954_RS13780
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13780
so part of: sequence
location: 3090..3248
location: region:3090-3248:1
so has part: feature:3090-3248:1:exon
subclass of: SO_0000010

position:3090:1
position: 3090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3248:1
position: 3248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3090-3248:1:exon

FA954_RS13780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13780
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDDMINEIQNNVCIVLAKVNDLPLYGVPDDEIMAIRERLYSILDRCEYDQV
SIO_010081: FA954_RS13780
subclass of: SO_0000673
so part of: FA954_RS13780
location: 3090..3248
location: region:3090-3248:1
so has part: feature:3090-3248:1:exon

WP_156097797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3090-3248:1:exon

FA954_RS13470
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13470
old locus tag: FA954_13475
so part of: sequence
location: 3591..4100
location: region:3591-4100:1
so has part: feature:3591-4100:1:exon
subclass of: SO_0000010

position:3591:1
position: 3591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4100:1
position: 4100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3591-4100:1:exon

FA954_RS13470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13470
old locus tag: FA954_13475
inference: COORDINATES: protein motif:HMM:NF016370.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF559 domain-containing protein
translation: MNKSIDIIGLQTKIKNEYRLIRRKYIVKKREAKQIMRWMIAPFLAVRFIKEQIERGHFPVLDKNMFLTDSVLERWLYYDIRSMYKGKIKPQYPIGPYWADFALPSYKLVIELDGHQYHKDRKEFDRRRDAFMKRKGWKVMRFTYDDIKKRRSQSIEKIINYTHKKQAAL
SIO_010081: FA954_RS13470
subclass of: SO_0000673
so part of: FA954_RS13470
location: 3591..4100
location: region:3591-4100:1
so has part: feature:3591-4100:1:exon

WP_052186930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3591-4100:1:exon

FA954_RS13475
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13475
old locus tag: FA954_13480
so part of: sequence
location: 4493..5422
location: region:4493-5422:1
so has part: feature:4493-5422:1:exon
subclass of: SO_0000010

position:4493:1
position: 4493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5422:1
position: 5422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4493-5422:1:exon

FA954_RS13475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13475
old locus tag: FA954_13480
inference: COORDINATES: protein motif:HMM:NF013775.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphotransferase
translation: MANTSIILNRLQWISAKCPNLNIQYWKVDNRGWDNLVIVINDSWIFRFPRNSKVQKRLLVEKQLLDHIKDLFRDLDVEVPRYQLLYDSADELPVCCFYPMIKGAPLSRKRLQALSPPSSRKAAHVLGDALALLHSINVSQLQFHGLLPEQTEDDWKSHWSDIKLKVLPLLTEREQYQVRHLFENFFEEWSVADLPKTLIHGDLSHSHILFSEEQQRITGIIDFGDAKIGDPAYDFSGLYWDYGNHFLLQVLDQYNRHTQLPYDTYELYRRVSTFYGKRQIFYDILHGLENNSPSYVKRNLQVLRQSLLK
SIO_010081: FA954_RS13475
subclass of: SO_0000673
so part of: FA954_RS13475
location: 4493..5422
location: region:4493-5422:1
so has part: feature:4493-5422:1:exon

WP_138615230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4493-5422:1:exon

FA954_RS13480
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13480
old locus tag: FA954_13485
so part of: sequence
location: complement(5640..5870)
location: region:5640-5870:-1
so has part: feature:5640-5870:-1:exon
subclass of: SO_0000010

position:5640:-1
position: 5640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5870:-1
position: 5870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5640-5870:-1:exon

FA954_RS13480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13480
old locus tag: FA954_13485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRYGGRRWWPQEVDKHWSSRSGFVDQAAVLGGKLGMQVRFAPIYSLDPPSKRPKRGQPRRSGGAPYFGTINTIGC
SIO_010081: FA954_RS13480
subclass of: SO_0000673
so part of: FA954_RS13480
location: complement(5640..5870)
location: region:5640-5870:-1
so has part: feature:5640-5870:-1:exon

WP_175413230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5640-5870:-1:exon

FA954_RS13485
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13485
old locus tag: FA954_13490
so part of: sequence
location: 6195..6659
location: region:6195-6659:1
so has part: feature:6195-6659:1:exon
subclass of: SO_0000010

position:6195:1
position: 6195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6659:1
position: 6659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6195-6659:1:exon

FA954_RS13485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13485
old locus tag: FA954_13490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNHLDAFMLGIKPACLLSKADKDDRVSFNKLIASELPKVEINSNLTLFFQNEKLKQDFLDQYQDIEFGTNEYHHLIGLTLGFPPKAVDYFVRSLIDQQLWEQSVRFDYLGYIFSGHKDDVQAIAEWLWSNVPAPPSSVKVTKINGETFFVHPKP
SIO_010081: FA954_RS13485
subclass of: SO_0000673
so part of: FA954_RS13485
location: 6195..6659
location: region:6195-6659:1
so has part: feature:6195-6659:1:exon

WP_138615232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6195-6659:1:exon

FA954_RS13490
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13490
old locus tag: FA954_13495
so part of: sequence
location: 6926..7123
location: region:6926-7123:1
so has part: feature:6926-7123:1:exon
subclass of: SO_0000010

position:6926:1
position: 6926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7123:1
position: 7123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6926-7123:1:exon

FA954_RS13490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13490
old locus tag: FA954_13495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENQKVIYVRVDKKTHKEFYKYAVDHDSSMNAVIESLIEVLLDTNIEPKKAIAAIRAAKEKPGES
SIO_010081: FA954_RS13490
subclass of: SO_0000673
so part of: FA954_RS13490
location: 6926..7123
location: region:6926-7123:1
so has part: feature:6926-7123:1:exon

WP_037998522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6926-7123:1:exon

FA954_RS13495
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13495
old locus tag: FA954_13500
so part of: sequence
location: complement(7132..7683)
location: region:7132-7683:-1
so has part: feature:7132-7683:-1:exon
subclass of: SO_0000010

position:7132:-1
position: 7132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7683:-1
position: 7683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7132-7683:-1:exon

FA954_RS13495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13495
old locus tag: FA954_13500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKLDRFKKLTAGKSKEEPRGRDAKSQLLSNSVSESKSEVVATAQTQSEAHQQAETKMKSESKQEPKTKTKLQSKSKTESNANSQSISHAEQQAKTQTEKEPKMKSDVKTDHDPAAELFSLAKQGSGKQRMEDIRKRRTYWLTDEEIQMIDELAKMTGKDKYEVVGLAVQSMYYRLQSEIKKD
SIO_010081: FA954_RS13495
subclass of: SO_0000673
so part of: FA954_RS13495
location: complement(7132..7683)
location: region:7132-7683:-1
so has part: feature:7132-7683:-1:exon

WP_037998523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7132-7683:-1:exon

FA954_RS13500
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13500
old locus tag: FA954_13505
so part of: sequence
location: complement(7670..8443)
location: region:7670-8443:-1
so has part: feature:7670-8443:-1:exon
subclass of: SO_0000010

position:7670:-1
position: 7670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8443:-1
position: 8443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7670-8443:-1:exon

FA954_RS13500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13500
old locus tag: FA954_13505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012443509.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MGTVISFGLQKGGVGKTTTTAITAYLLAKKYKVLAIDFDSQGNLTQMLTTDNIYNFTGKTVLEAIQEKNADPYIVEISKNLHLLPAEDLLALLPNRLIEMYPERKDQLASLRMLLEPIKNRYDYILLDLPPNVGDHTLCGLVASDYAVVVMQTEPFAFNALERYLETMELAQEMANPDLRLAGILTCLMNQRTSLDNAIHHQALEDYESLVFDTVIKRKARIKEFSLEGIRDRTKADREALEQYQSFVKELLSRVQA
SIO_010081: FA954_RS13500
subclass of: SO_0000673
so part of: FA954_RS13500
location: complement(7670..8443)
location: region:7670-8443:-1
so has part: feature:7670-8443:-1:exon

WP_037998525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7670-8443:-1:exon

FA954_RS13505
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13505
old locus tag: FA954_13510
so part of: sequence
location: 8660..8857
location: region:8660-8857:1
so has part: feature:8660-8857:1:exon
subclass of: SO_0000010

position:8660:1
position: 8660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8857:1
position: 8857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8660-8857:1:exon

FA954_RS13505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13505
old locus tag: FA954_13510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIPSHIRSKRFVEYINSLKSRLELKKRQKEEASEDAFKWELEGAIRELELVIVEVENLITAKKY
SIO_010081: FA954_RS13505
subclass of: SO_0000673
so part of: FA954_RS13505
location: 8660..8857
location: region:8660-8857:1
so has part: feature:8660-8857:1:exon

WP_037998527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8660-8857:1:exon

FA954_RS13510
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13510
old locus tag: FA954_13515
so part of: sequence
location: 8919..9869
location: region:8919-9869:1
so has part: feature:8919-9869:1:exon
subclass of: SO_0000010

position:8919:1
position: 8919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9869:1
position: 9869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9869:1:exon

FA954_RS13510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13510
old locus tag: FA954_13515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYHENTLYHEIKKKRTFLDWVMLFIVVAIAGIVIALSFHNTTKLARELSLDPYLTAGLVEILFGSLLFIRGKQRATQRNVPLFLSCGYFISLGFVTAVNMWGLAQENMIIGPVVGLAISGSMWLMETTLVWLWTSSHEPYQKSIRQRMREAKREIKEEKIIQRIEWMKWEARKPDLSLIRKARKAEEKRKEVVGDGLPEFFLQLQKKEPIKEIVAELHETQPKTVDVQDQKEAKELVPFRRQIGFHMERTDHAADPKPKSPAPRFQPNMEARAKAIETAKKLKEELGRLPKQRELMENGLSEYYAKWARQELKKHV
SIO_010081: FA954_RS13510
subclass of: SO_0000673
so part of: FA954_RS13510
location: 8919..9869
location: region:8919-9869:1
so has part: feature:8919-9869:1:exon

WP_037998530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8919-9869:1:exon

FA954_RS13515
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13515
old locus tag: FA954_13520
so part of: sequence
location: 9957..10022
location: region:9957-10022:1
so has part: feature:9957-10022:1:exon
subclass of: SO_0000011

position:9957:1
position: 9957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10022:1
position: 10022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9957-10022:1:exon

FA954_RS13515
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 2026
nc RNA class: hammerhead_ribozyme
locus tag: FA954_RS13515
old locus tag: FA954_13520
product: hammerhead ribozyme type II
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02276
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: FA954_RS13515
subclass of: SO_0000673
so part of: FA954_RS13515
location: 9957..10022
location: region:9957-10022:1
so has part: feature:9957-10022:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9957-10022:1:exon

FA954_RS13520
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13520
old locus tag: FA954_13525
so part of: sequence
location: 10037..10366
location: region:10037-10366:1
so has part: feature:10037-10366:1:exon
subclass of: SO_0000010

position:10037:1
position: 10037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10366:1
position: 10366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10037-10366:1:exon

FA954_RS13520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13520
old locus tag: FA954_13525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYFFETKGSQCKNTPKCRRFLMESLEGSHVYCPVCNAEIPVLENTTPLPKEFIRYIMEKYDTDFVIYGPAEFDWEDFGIESGEEESKVLPYLEFAQTCEEEYFSWASRK
SIO_010081: FA954_RS13520
subclass of: SO_0000673
so part of: FA954_RS13520
location: 10037..10366
location: region:10037-10366:1
so has part: feature:10037-10366:1:exon

WP_069201573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10037-10366:1:exon

FA954_RS13525
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13525
old locus tag: FA954_13530
so part of: sequence
location: 10708..11676
location: region:10708-11676:1
so has part: feature:10708-11676:1:exon
subclass of: SO_0000010

position:10708:1
position: 10708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11676:1
position: 11676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10708-11676:1:exon

FA954_RS13525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13525
old locus tag: FA954_13530
inference: COORDINATES: protein motif:HMM:TIGR01446.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaD domain protein
translation: MGNERFINARNRRRGFTTVLNQMLDDPTISLEAKGLLTILLSNKDDWKINMKEIIGRSKNGRDAHYRVVNELIKSGYFFRIQIKEKGKFKEVIYVFSDDKEEVKEAVKELEDKGLLPHPENQEADNKKPFPENPDTEKPYPENQDNNNTNTKKTNTNKTNISMYVGSDHPQLDKEEQTKPLQMYIIDRFASVYKLTGYAKKNLLELIEIHGETLVSEALERTICSETGKPIAYIKGILKKWSAAGVKTADDIAQYEETFRRNQQKKKKRSTKSSRHQDKPSGSDLPQSLREQPSKEQEKTPDDEQQALIQEKLAKLNKKPAI
SIO_010081: FA954_RS13525
subclass of: SO_0000673
so part of: FA954_RS13525
location: 10708..11676
location: region:10708-11676:1
so has part: feature:10708-11676:1:exon

WP_052186940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10708-11676:1:exon

FA954_RS13530
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13530
old locus tag: FA954_13535
so part of: sequence
location: 11771..11929
location: region:11771-11929:1
so has part: feature:11771-11929:1:exon
subclass of: SO_0000010

position:11771:1
position: 11771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11929:1
position: 11929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11771-11929:1:exon

FA954_RS13530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13530
old locus tag: FA954_13535
inference: COORDINATES: protein motif:HMM:NF024639.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD hydrolase-like protein
translation: MDLSRSWMIGDMESDIQAGKKAGCRTALISREYSLLDFARELRKTAAWKTGS
SIO_010081: FA954_RS13530
subclass of: SO_0000673
so part of: FA954_RS13530
location: 11771..11929
location: region:11771-11929:1
so has part: feature:11771-11929:1:exon

WP_280524683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11771-11929:1:exon

FA954_RS13535
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13535
old locus tag: FA954_13540
so part of: sequence
location: complement(12172..12762)
location: region:12172-12762:-1
so has part: feature:12172-12762:-1:exon
subclass of: SO_0000010

position:12172:-1
position: 12172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12762:-1
position: 12762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12172-12762:-1:exon

FA954_RS13535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13535
old locus tag: FA954_13540
inference: COORDINATES: protein motif:HMM:NF014069.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HD domain-containing protein
translation: MKMKLLIPSVKKPGPFTSGKLAGYLSPEENRYHHILGVVRGMQEILPRLELEQETKAQLIQAAYLHDVGYSKQLNQYNFHPLDGAVFAQQSGFSKPVIAAILFHSEAYETVKKARTDLLNIYETNKQLLDEQDRLFIDLITYCDVQTSPQGEKISLDKRVQDVVNRYGEDHPVSQMMIFCKPKYQNTIDRVNQWIK
SIO_010081: FA954_RS13535
subclass of: SO_0000673
so part of: FA954_RS13535
location: complement(12172..12762)
location: region:12172-12762:-1
so has part: feature:12172-12762:-1:exon

WP_138615233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12172-12762:-1:exon

FA954_RS13540
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13540
old locus tag: FA954_13545
so part of: sequence
location: complement(12759..13544)
location: region:12759-13544:-1
so has part: feature:12759-13544:-1:exon
subclass of: SO_0000010

position:12759:-1
position: 12759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13544:-1
position: 13544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12759-13544:-1:exon

FA954_RS13540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13540
old locus tag: FA954_13545
inference: COORDINATES: protein motif:HMM:NF019322.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MKRTKIDEVVKIIQKRILEGEYTVGQKLPSERTLSEELNVSRGTIREALQRLQLERLIDIIPRGGVFVRSPIQKIVLGGSDFPKNVGPELKKSGSFIHLMRKQGREVIVRYLEPSKIIAAGNEIGKQLNIDKKEKVLRRYRVQLIDRVPYRILDTYLLASVAGELVGHEDHKVPLFQWLYDEKKLRASRVTEQLHCRMPTEKETQILNIPRTQPVVEMHRWIWGEKEDTEEVLFEYSKIVANALLHDFRYGYTIDEEAIRP
SIO_010081: FA954_RS13540
subclass of: SO_0000673
so part of: FA954_RS13540
location: complement(12759..13544)
location: region:12759-13544:-1
so has part: feature:12759-13544:-1:exon

WP_175413231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12759-13544:-1:exon

FA954_RS13545
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13545
old locus tag: FA954_13550
so part of: sequence
location: complement(13557..14027)
location: region:13557-14027:-1
so has part: feature:13557-14027:-1:exon
subclass of: SO_0000010

position:13557:-1
position: 13557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14027:-1
position: 14027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13557-14027:-1:exon

FA954_RS13545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13545
old locus tag: FA954_13550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018524858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NUDIX domain-containing protein
translation: MGRKDYYHEENAPKPNSIVPAASAIVLNNDEKILLHKRRDNALWSLPGGGMELGESIKETIIREVKEETGLDINVVKCIGIYTDPGHIIAYDDGEVRRQFSICFECRITGGELSVSEESHQVGFFTIEEIEQLEMHPAQRVRINDYLQQQERAFIR
SIO_010081: FA954_RS13545
subclass of: SO_0000673
so part of: FA954_RS13545
location: complement(13557..14027)
location: region:13557-14027:-1
so has part: feature:13557-14027:-1:exon

WP_138615235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13557-14027:-1:exon

FA954_RS13785
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13785
so part of: sequence
location: 14212..14388
location: region:14212-14388:1
so has part: feature:14212-14388:1:exon
subclass of: SO_0000010

position:14212:1
position: 14212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14388:1
position: 14388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14212-14388:1:exon

FA954_RS13785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNELLPSKKCKVVKIETEKGTVSLALSHLIHAEIEPGKVIFSGFSYDIFSSANSEKGE
SIO_010081: FA954_RS13785
subclass of: SO_0000673
so part of: FA954_RS13785
location: 14212..14388
location: region:14212-14388:1
so has part: feature:14212-14388:1:exon

WP_175413232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14212-14388:1:exon

FA954_RS13550
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13550
old locus tag: FA954_13555
so part of: sequence
location: 14433..14924
location: region:14433-14924:1
so has part: feature:14433-14924:1:exon
subclass of: SO_0000010

position:14433:1
position: 14433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14924:1
position: 14924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14433-14924:1:exon

FA954_RS13550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13550
old locus tag: FA954_13555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFLKLKKLLGDPIPMYLVPLKHGNRWSLRKKPEKGREFIKGLFFPRAWANPESHPKTGYFFPENIPEKQGDCIYLFEGRCRLGNNSNGLENQEKETEVVSFTYKNGQLVRVCTTDENGRVISVCFYDDDQLAYKFDYDEQGRIRKTFYDEKQQERGFLQWIQR
SIO_010081: FA954_RS13550
subclass of: SO_0000673
so part of: FA954_RS13550
location: 14433..14924
location: region:14433-14924:1
so has part: feature:14433-14924:1:exon

WP_138615236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14433-14924:1:exon

FA954_RS13555
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13555
old locus tag: FA954_13560
so part of: sequence
location: 15043..15351
location: region:15043-15351:1
so has part: feature:15043-15351:1:exon
subclass of: SO_0000010

position:15043:1
position: 15043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15351:1
position: 15351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15043-15351:1:exon

FA954_RS13555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13555
old locus tag: FA954_13560
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEAPDLQKTIAFVSSFTDLYMLFAGMALIFLTFQAIYHIGFKKIKLAKVFGQYFVKTLALWVVSSALIIIVAGQLMASLWDGTLLLIDLFGDKVAEALKGAF
SIO_010081: FA954_RS13555
subclass of: SO_0000673
so part of: FA954_RS13555
location: 15043..15351
location: region:15043-15351:1
so has part: feature:15043-15351:1:exon

WP_138615237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15043-15351:1:exon

FA954_RS14040
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS14040
so part of: sequence
location: 15471..15602
location: region:15471-15602:1
so has part: feature:15471-15602:1:exon
subclass of: SO_0000010

position:15471:1
position: 15471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15602:1
position: 15602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15471-15602:1:exon

FA954_RS14040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS14040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKLLAVIISFTIVSGCFISIGKYGHEEEAKQWEKEVEALKK
SIO_010081: FA954_RS14040
subclass of: SO_0000673
so part of: FA954_RS14040
location: 15471..15602
location: region:15471-15602:1
so has part: feature:15471-15602:1:exon

WP_255347215.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15471-15602:1:exon

FA954_RS13560
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13560
old locus tag: FA954_13565
so part of: sequence
location: 15766..17559
location: region:15766-17559:1
so has part: feature:15766-17559:1:exon
subclass of: SO_0000010

position:15766:1
position: 15766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17559:1
position: 17559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15766-17559:1:exon

FA954_RS13560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13560
old locus tag: FA954_13565
inference: COORDINATES: protein motif:HMM:NF024776.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MKNHSAFVDSIRRQKIPAWMKKATEVFRKEVWPEMLEVVFEPKQKKAIEEWFKREEQKEDEQKEKPKHGRIAGKMVTDSPHHIAFARHRSGKILSLIREENEEAKDSLSTPMMVVGKQGAGKSTLFINMALEFFGARAKNRKEWEQIARSVFLFDVADGAMLPEILSCVPEWLRDRVVILNHADMERVVPVAWHDLVKLYQDDESIAAEVAEIETELLRKFLQDDSQTISIERFFKSALQASYRVGEGNLLDAMRILKDGEYRQELMESLSEMDFELEIALNQLEEEAEKENSRVLETIENRIAQLRSNKRLFYSLSQMPDEQIDFWKWMNEPHLVLIHIPNSKETFQDFAFTHYIVKLWRMMMAREMIPKPHRRECAIIVDEIDLIIKNKPVQNIFLQMTKKPRKYRTKFIFSFHDWSSFAKAGQRKNDILRSFKTGMDMVLLKGSDEVFQDFEAELDPFTVEDFHNLEKYQGIMRITCNKKEYVFRAKLLEPASERIPSFSVPDPGNQFGMTKASITQRAREILLPLYSKKSEEEAKSENITAKDKVLALLHESPGLTTKEICEELDISRMTFQRIKKELKLQEQRNGKKLVYFV
SIO_010081: FA954_RS13560
subclass of: SO_0000673
so part of: FA954_RS13560
location: 15766..17559
location: region:15766-17559:1
so has part: feature:15766-17559:1:exon

WP_037998466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15766-17559:1:exon

FA954_RS13565
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13565
old locus tag: FA954_13570
so part of: sequence
location: 17699..18034
location: region:17699-18034:1
so has part: feature:17699-18034:1:exon
subclass of: SO_0000010

position:17699:1
position: 17699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18034:1
position: 18034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17699-18034:1:exon

FA954_RS13565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13565
old locus tag: FA954_13570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIESGAKIVEWIMIISNSILIFWLSYKLNQFIKHLFGLEVQRNPVIDRWAWKLILIGYLAAFMVMGIFLLMFYWAVWVIILIIWLAGKGITGSLLKPIFWPIKIFTGIFRR
SIO_010081: FA954_RS13565
subclass of: SO_0000673
so part of: FA954_RS13565
location: 17699..18034
location: region:17699-18034:1
so has part: feature:17699-18034:1:exon

WP_037998468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17699-18034:1:exon

FA954_RS13790
type: Gene
subclass of: SO_0000704
RO_0002162: 2026
locus tag: FA954_RS13790
so part of: sequence
location: complement(18093..18248)
location: region:18093-18248:-1
so has part: feature:18093-18248:-1:exon
subclass of: SO_0000010

position:18093:-1
position: 18093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18248:-1
position: 18248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18093-18248:-1:exon

FA954_RS13790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2026
locus tag: FA954_RS13790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKTMRKSAIVGLIFLITFLFDFAIITETNENKQENNYNNKKMEATEPSCC
SIO_010081: FA954_RS13790
subclass of: SO_0000673
so part of: FA954_RS13790
location: complement(18093..18248)
location: region:18093-18248:-1
so has part: feature:18093-18248:-1:exon

WP_156097793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18093-18248:-1:exon