Thermoactinomyces vulgaris strain 2H plasmid pTvu19, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Thermoactinomycetaceae; Thermoactinomyces.
Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris strain 2H
Submitted (23-APR-2019) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP039711.1.\nBacteria and source DNA available from Houda Mankai\n(houda.mankai@googlemail.com).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 10-JUL-2018\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Tvu_HGAP3_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 328.15x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:17:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,758\nCDSs (total) :: 2,660\nGenes (coding) :: 2,623\nCDSs (with protein) :: 2,623\nGenes (RNA) :: 98\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 5\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 16 of 37\nPseudo Genes (incomplete) :: 25 of 37\nPseudo Genes (internal stop) :: 6 of 37\nPseudo Genes (multiple problems) :: 9 of 37\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024252.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_000873695.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_012443509.1
COORDINATES: nucleotide motif:Rfam:14.4:RF02276
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR01446.1
COORDINATES: protein motif:HMM:NF024639.2
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF019322.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018524858.1
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein