Harpia harpyja isolate bHarHar1 chromosome 28, bHarHar1 primary haplotype, whole genome shotgun sequence.
type: Entry
definition: Harpia harpyja isolate bHarHar1 chromosome 28, bHarHar1 primary haplotype, whole genome shotgun sequence.
sequence version: NC_068967.1
sequence date: 2023-02-26
sequence: sequence
division: CON
label: NC_068967.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA910140
dblink: SAMN31530492
keyword: WGS
keyword: RefSeq
source: Harpia harpyja (harpy eagle)
organism: Harpia harpyja
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Harpia.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM048741.1.\nAssembly name: bHarHar1 primary haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/11/27. The original whole-genome shotgun project has the\naccession JAPMHW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 28-SEP-2021\nAssembly Method :: Hifiasm v. 0.15.1-r334; purge_dups v.\n 1.2.5; Bionano solve v. 3.6; Salsa v. 2.3\nAssembly Name :: bHarHar1 primary haplotype\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 54.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano optical\n mapping; Arima HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_026419915.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 132100
topology: linear
so has quality: SO_0000987
location: 1..132100
location: region:1-132100:1
RO_0002162: 202280

NC_068967
type: RefSeq
SIO_000068: refseq

PRJNA910140
type: BioProject
SIO_000068: bioproject

SAMN31530492
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132100:1
position: 132100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-132100:1:source
so part of: sequence
organism: Harpia harpyja
mol type: genomic DNA
isolate: bHarHar1
chromosome: 28
sex: female
tissue type: blood
dev stage: adult
country: Brazil: Sao Jose do Laguinho / / Gleba Vila Amazonia in the municipality of Parintins
lat lon: 2.625833 S 56.649722 W
collection date: 2002-06-24
collected by: Tomas Hrbek

202280
type: Taxonomy
SIO_000068: taxonomy

LOC128136017
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: LOC128136017
note: serine protease 53-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4243..20172)
location: region:4243-20172:-1
so has part: feature:4243-20172:-1:exon
subclass of: SO_0000010

128136017
type: Gene
SIO_000068: ncbigene

position:4243:-1
position: 4243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20172:-1
position: 20172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4243-20172:-1:exon

LOC128136017
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: LOC128136017
product: serine protease 53-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_052775113.1
SIO_010081: LOC128136017
subclass of: SO_0000673
so part of: LOC128136017
location: complement(join(4243..4636,8338..8486,10512..10744,11063..11213,11341..11560,12399..12565,13779..14056,15499..15673,16117..16149,16484..16601,20070..20172))
location: region:4243-20172:-1
so has part: feature:20070-20172:-1:exon
so has part: feature:16484-16601:-1:exon
so has part: feature:16117-16149:-1:exon
so has part: feature:15499-15673:-1:exon
so has part: feature:13779-14056:-1:exon
so has part: feature:12399-12565:-1:exon
so has part: feature:11341-11560:-1:exon
so has part: feature:11063-11213:-1:exon
so has part: feature:10512-10744:-1:exon
so has part: feature:8338-8486:-1:exon
so has part: feature:4243-4636:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20070-20172:-1:exon

position:20070:-1
position: 20070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16484-16601:-1:exon

position:16484:-1
position: 16484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16601:-1
position: 16601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16117-16149:-1:exon

position:16117:-1
position: 16117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16149:-1
position: 16149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:15499-15673:-1:exon

position:15499:-1
position: 15499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15673:-1
position: 15673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13779-14056:-1:exon

position:13779:-1
position: 13779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14056:-1
position: 14056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:12399-12565:-1:exon

position:12399:-1
position: 12399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12565:-1
position: 12565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11341-11560:-1:exon

position:11341:-1
position: 11341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11560:-1
position: 11560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11063-11213:-1:exon

position:11063:-1
position: 11063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11213:-1
position: 11213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:10512-10744:-1:exon

position:10512:-1
position: 10512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10744:-1
position: 10744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8338-8486:-1:exon

position:8338:-1
position: 8338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8486:-1
position: 8486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4243-4636:-1:exon

position:4636:-1
position: 4636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128136017
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: LOC128136017
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine protease 53-like
translation: MARHASTRLDTPGHAAALLLLLLAHAEILSGDTPAGAEPECGRQRELGRVVGGTAARPGEWPWQVSLQLRGEHFCGGTLVTPQWVLSAAHCFQGPNGSRAEPREWRAVVGRLRLEETGGQERTVVEVVVHEGYRRVEGGHDLALARLESPVTLGSRVGTICLPQANHPFAFGTPCWITGWGHVAENVSLPAGSPLQKVALDLLSRKTCNCLYSNLRNRELARPARHGMVCAGGQEGGRGACQADSGGPLACGGPGGQWVQAGVLSFAVGCARPNGPVLATGLVAHAGWLRRRLPPTVFAPPGPPPPPGLEDGKCLGCGMQGGPQLDAPPGPSWPWAVSLRLRGEHRCGGALVAESWVLTAAHCFIGQQAAEAWEAVAAGDTRRKGARLHLHGAYVEPGGGRDLALLRLETPLPLGPTLRPLCLPYSEHQRPPGTRCWALLAPNGSSIPEKLVNVEVTLSESCGTRGDLRDDEGVLSPPDTFCITVPEGTSACQPDGGSALVCEERGIWFLMGTATVGGCAQGGPPLFTAAPHYERWIAGITREAYFAETPPDPREEEEEEEEKEPTEDPGAREHPKPTENPGFGGGPNTWRRAQVPEGTDVRGYPESWGDPEIWESSGKA
SIO_010081: LOC128136017
subclass of: SO_0000673
so part of: LOC128136017
location: complement(join(4253..4636,8338..8486,10512..10744,11063..11213,11341..11560,12399..12565,13779..14056,15499..15673,16117..16149,16484..16556))
location: region:4253-16556:-1
so has part: feature:16484-16556:-1:exon
so has part: feature:16117-16149:-1:exon
so has part: feature:15499-15673:-1:exon
so has part: feature:13779-14056:-1:exon
so has part: feature:12399-12565:-1:exon
so has part: feature:11341-11560:-1:exon
so has part: feature:11063-11213:-1:exon
so has part: feature:10512-10744:-1:exon
so has part: feature:8338-8486:-1:exon
so has part: feature:4253-4636:-1:exon

XP_052631073.1
type: Protein
SIO_000068: ncbiprotein

position:4253:-1
position: 4253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16556:-1
position: 16556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16484-16556:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16117-16149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15499-15673:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13779-14056:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12399-12565:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11341-11560:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11063-11213:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10512-10744:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8338-8486:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4253-4636:-1:exon

LOC128136019
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: LOC128136019
note: vitamin K epoxide reductase complex subunit 1-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17850..20266
location: region:17850-20266:1
so has part: feature:17850-20266:1:exon
subclass of: SO_0000010

128136019
type: Gene
SIO_000068: ncbigene

position:17850:1
position: 17850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20266:1
position: 20266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17850-20266:1:exon

LOC128136019
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: LOC128136019
product: vitamin K epoxide reductase complex subunit 1-like protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transcript id: XM_052775115.1
SIO_010081: LOC128136019
subclass of: SO_0000673
so part of: LOC128136019
location: join(17850..18006,18404..18513,18985..18993,20067..20266)
location: region:17850-20266:1
so has part: feature:17850-18006:1:exon
so has part: feature:18404-18513:1:exon
so has part: feature:18985-18993:1:exon
so has part: feature:20067-20266:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17850-18006:1:exon

position:18006:1
position: 18006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18404-18513:1:exon

position:18404:1
position: 18404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18513:1
position: 18513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18985-18993:1:exon

position:18985:1
position: 18985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18993:1
position: 18993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:20067-20266:1:exon

position:20067:1
position: 20067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128136019
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: LOC128136019
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin K epoxide reductase complex subunit 1-like protein 1
translation: MAARAALCLAGAALSLYALHVERARARDPSYRAACDLGPAVSCTRVFASRWGRGLGLVEVVAGRDSVANVPNGAIGVVFYLLQGLLVGTLPGRVTAAALLGTSVASAMASLWLAGVLAFGLRDFCLVCITTYVLNGLLLALNWRRWRRLRRLKTA
SIO_010081: LOC128136019
subclass of: SO_0000673
so part of: LOC128136019
location: join(17858..18006,18404..18513,18985..18993,20067..20266)
location: region:17858-20266:1
so has part: feature:17858-18006:1:exon
so has part: feature:18404-18513:1:exon
so has part: feature:18985-18993:1:exon
so has part: feature:20067-20266:1:exon

XP_052631075.1
type: Protein
SIO_000068: ncbiprotein

position:17858:1
position: 17858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17858-18006:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18404-18513:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18985-18993:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:20067-20266:1:exon

BCKDK
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: BCKDK
note: branched chain keto acid dehydrogenase kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 22830..27330
location: region:22830-27330:1
so has part: feature:22830-27330:1:exon
subclass of: SO_0000010

128136018
type: Gene
SIO_000068: ncbigene

position:22830:1
position: 22830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27330:1
position: 27330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22830-27330:1:exon

BCKDK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: BCKDK
product: branched chain keto acid dehydrogenase kinase
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
transcript id: XM_052775114.1
SIO_010081: BCKDK
subclass of: SO_0000673
so part of: BCKDK
location: join(22830..22990,23109..23179,23502..23612,23754..23802,24079..24198,24325..24423,24514..24587,25158..25286,25736..25825,26347..26508,26604..26850,26901..27330)
location: region:22830-27330:1
so has part: feature:22830-22990:1:exon
so has part: feature:23109-23179:1:exon
so has part: feature:23502-23612:1:exon
so has part: feature:23754-23802:1:exon
so has part: feature:24079-24198:1:exon
so has part: feature:24325-24423:1:exon
so has part: feature:24514-24587:1:exon
so has part: feature:25158-25286:1:exon
so has part: feature:25736-25825:1:exon
so has part: feature:26347-26508:1:exon
so has part: feature:26604-26850:1:exon
so has part: feature:26901-27330:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22830-22990:1:exon

position:22990:1
position: 22990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23109-23179:1:exon

position:23109:1
position: 23109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23179:1
position: 23179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:23502-23612:1:exon

position:23502:1
position: 23502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23612:1
position: 23612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:23754-23802:1:exon

position:23754:1
position: 23754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23802:1
position: 23802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:24079-24198:1:exon

position:24079:1
position: 24079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24198:1
position: 24198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:24325-24423:1:exon

position:24325:1
position: 24325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24423:1
position: 24423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:24514-24587:1:exon

position:24514:1
position: 24514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24587:1
position: 24587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:25158-25286:1:exon

position:25158:1
position: 25158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25286:1
position: 25286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:25736-25825:1:exon

position:25736:1
position: 25736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25825:1
position: 25825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:26347-26508:1:exon

position:26347:1
position: 26347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26508:1
position: 26508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:26604-26850:1:exon

position:26604:1
position: 26604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26850:1
position: 26850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:26901-27330:1:exon

position:26901:1
position: 26901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BCKDK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: BCKDK
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: 3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial
translation: MLRRVLGGRRRGALPPHPPARAAADQTPPDLARERSKAVTSFYHQPAIDVAAEKPSVRLTPTTMLYSGRSQDGSHILKSARYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLSDFPPIQAQGDEARYCALLRQLLEDHKDVVTLLAEGLRECRRHIQDERLLRPFLDKTLTSRLGMRMLAAHHLALHEDKPDFVGIICTRLSPKKLIEKWVDFARRLCEHQYGNAPRVRINGHVAARFPFIPLPLDYVLPELLKNAMRATMESHLDTPYNVPDIVVTIANNDIDLVIRISDRGGGIPHDLLDKVTEYHFSTAEASAQDPRLGGPFRNLLDLSNSGQAGPMHGFGFGLPTSRAYAEYLGGSLCLQSLQGVGTDVYLRLRHIDGKGESFRI
SIO_010081: BCKDK
subclass of: SO_0000673
so part of: BCKDK
location: join(22830..22990,23109..23179,23502..23612,23754..23802,24079..24198,24325..24423,24514..24587,25158..25286,25736..25825,26347..26508,26604..26748)
location: region:22830-26748:1
so has part: feature:22830-22990:1:exon
so has part: feature:23109-23179:1:exon
so has part: feature:23502-23612:1:exon
so has part: feature:23754-23802:1:exon
so has part: feature:24079-24198:1:exon
so has part: feature:24325-24423:1:exon
so has part: feature:24514-24587:1:exon
so has part: feature:25158-25286:1:exon
so has part: feature:25736-25825:1:exon
so has part: feature:26347-26508:1:exon
so has part: feature:26604-26748:1:exon

XP_052631074.1
type: Protein
SIO_000068: ncbiprotein

position:26748:1
position: 26748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22830-22990:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:23109-23179:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:23502-23612:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:23754-23802:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:24079-24198:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:24325-24423:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:24514-24587:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:25158-25286:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:25736-25825:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:26347-26508:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:26604-26748:1:exon

LOC128136020
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: LOC128136020
note: fructose-bisphosphate aldolase A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 35357..41834
location: region:35357-41834:1
so has part: feature:35357-41834:1:exon
subclass of: SO_0000010

128136020
type: Gene
SIO_000068: ncbigene

position:35357:1
position: 35357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41834:1
position: 41834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35357-41834:1:exon

LOC128136020
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: LOC128136020
product: fructose-bisphosphate aldolase A-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 2 codons
transcript id: XM_052775116.1
SIO_010081: LOC128136020
subclass of: SO_0000673
so part of: LOC128136020
location: join(35357..35518,36848..37059,37795..37847,38146..38307,39537..39620,39697..39871,40346..40545,41597..41834)
location: region:35357-41834:1
so has part: feature:35357-35518:1:exon
so has part: feature:36848-37059:1:exon
so has part: feature:37795-37847:1:exon
so has part: feature:38146-38307:1:exon
so has part: feature:39537-39620:1:exon
so has part: feature:39697-39871:1:exon
so has part: feature:40346-40545:1:exon
so has part: feature:41597-41834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35357-35518:1:exon

position:35518:1
position: 35518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36848-37059:1:exon

position:36848:1
position: 36848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37059:1
position: 37059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:37795-37847:1:exon

position:37795:1
position: 37795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37847:1
position: 37847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:38146-38307:1:exon

position:38146:1
position: 38146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38307:1
position: 38307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:39537-39620:1:exon

position:39537:1
position: 39537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39620:1
position: 39620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:39697-39871:1:exon

position:39697:1
position: 39697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39871:1
position: 39871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:40346-40545:1:exon

position:40346:1
position: 40346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40545:1
position: 40545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:41597-41834:1:exon

position:41597:1
position: 41597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC128136020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: LOC128136020
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: fructose-bisphosphate aldolase A-like
translation: MSPPVAALTPEQKQELAAIAQRIVAPGKGIXAADESTGSIAKRLSSVGAENTEENRRWYRQLLFTADSRVDPCIGGVILFHETLYQKTDDGRPFPQVIRSKGALVGIKVDKGVVPXAGTNGETTTQGLDGLMERCAQYKKDGADFAKWRCVLKITAHTPTRLAVMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKHCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHACTKKYSPEEIAMATVTALRRTVPPAVPGITFLSGGQSEEEASLNLNAINRCPLARPWALTFSYGRALQASALRAWAGKKDNTKAAQEEYVKRALANSLACQGKYTPSGPAGAAASESLFVSNHAY
SIO_010081: LOC128136020
subclass of: SO_0000673
so part of: LOC128136020
location: join(35408..35518,36848..37059,37795..37847,38146..38307,39537..39620,39697..39871,40346..40545,41597..41693)
location: region:35408-41693:1
so has part: feature:35408-35518:1:exon
so has part: feature:36848-37059:1:exon
so has part: feature:37795-37847:1:exon
so has part: feature:38146-38307:1:exon
so has part: feature:39537-39620:1:exon
so has part: feature:39697-39871:1:exon
so has part: feature:40346-40545:1:exon
so has part: feature:41597-41693:1:exon

XP_052631076.1
type: Protein
SIO_000068: ncbiprotein

position:35408:1
position: 35408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41693:1
position: 41693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35408-35518:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36848-37059:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:37795-37847:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:38146-38307:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39537-39620:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39697-39871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:40346-40545:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41597-41693:1:exon

PPP4C
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: PPP4C
note: protein phosphatase 4 catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 43169..47785
location: region:43169-47785:1
so has part: feature:43169-47785:1:exon
subclass of: SO_0000010

128136010
type: Gene
SIO_000068: ncbigene

position:43169:1
position: 43169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47785:1
position: 47785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43169-47785:1:exon

PPP4C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: PPP4C
product: protein phosphatase 4 catalytic subunit
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
transcript id: XM_052775106.1
SIO_010081: PPP4C
subclass of: SO_0000673
so part of: PPP4C
location: join(43169..43219,43495..43597,43740..43791,44258..44309,44747..44847,45112..45288,45866..45992,46676..46867,47524..47785)
location: region:43169-47785:1
so has part: feature:43169-43219:1:exon
so has part: feature:43495-43597:1:exon
so has part: feature:43740-43791:1:exon
so has part: feature:44258-44309:1:exon
so has part: feature:44747-44847:1:exon
so has part: feature:45112-45288:1:exon
so has part: feature:45866-45992:1:exon
so has part: feature:46676-46867:1:exon
so has part: feature:47524-47785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43169-43219:1:exon

position:43219:1
position: 43219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43495-43597:1:exon

position:43495:1
position: 43495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43597:1
position: 43597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:43740-43791:1:exon

position:43740:1
position: 43740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43791:1
position: 43791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:44258-44309:1:exon

position:44258:1
position: 44258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44309:1
position: 44309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:44747-44847:1:exon

position:44747:1
position: 44747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44847:1
position: 44847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:45112-45288:1:exon

position:45112:1
position: 45112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45288:1
position: 45288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:45866-45992:1:exon

position:45866:1
position: 45866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45992:1
position: 45992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:46676-46867:1:exon

position:46676:1
position: 46676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46867:1
position: 46867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:47524-47785:1:exon

position:47524:1
position: 47524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP4C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: PPP4C
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 3 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:45139..45141,aa:OTHER)
product: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 4 catalytic subunit
translation: MKDPLGAVVGQLQTQEAPWGELSDLDRQIEQLRRCELIKESESKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVAGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDPASRXSGGNHESRQITQVYGFYDECLRIYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNASNDISMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKEFIIFEAAPQETRGIPSKKPVADYFL
SIO_010081: PPP4C
subclass of: SO_0000673
so part of: PPP4C
location: join(43169..43219,43495..43597,43740..43791,44258..44309,44747..44847,45112..45288,45866..45992,46676..46867,47524..47654)
location: region:43169-47654:1
so has part: feature:43169-43219:1:exon
so has part: feature:43495-43597:1:exon
so has part: feature:43740-43791:1:exon
so has part: feature:44258-44309:1:exon
so has part: feature:44747-44847:1:exon
so has part: feature:45112-45288:1:exon
so has part: feature:45866-45992:1:exon
so has part: feature:46676-46867:1:exon
so has part: feature:47524-47654:1:exon

XP_052631066.1
type: Protein
SIO_000068: ncbiprotein

position:47654:1
position: 47654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43169-43219:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43495-43597:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:43740-43791:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:44258-44309:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:44747-44847:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:45112-45288:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45866-45992:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:46676-46867:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:47524-47654:1:exon

SRCAP
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: SRCAP
note: Snf2 related CREBBP activator protein; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 51263..76033
location: region:51263-76033:1
so has part: feature:51263-76033:1:exon
subclass of: SO_0000010

128136011
type: Gene
SIO_000068: ncbigene

position:51263:1
position: 51263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76033:1
position: 76033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51263-76033:1:exon

SRCAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: SRCAP
product: Snf2 related CREBBP activator protein
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_052775107.1
SIO_010081: SRCAP
subclass of: SO_0000673
so part of: SRCAP
location: join(51263..51338,51437..51618,52545..52732,53723..53908,54311..54451,57260..57452,57904..58040,58139..58214,59099..59188,60337..60432,60974..61299,61382..61559,62736..62872,62964..63133,64114..64306,64876..65012,65100..65286,66127..66296,66758..67192,67695..67873,67986..68167,68733..68903,70522..70557,70652..70873,71607..71812,72611..72780,73177..73373,73465..73579,73771..73944,74551..74730,75092..75175,75608..76033)
location: region:51263-76033:1
so has part: feature:51263-51338:1:exon
so has part: feature:51437-51618:1:exon
so has part: feature:52545-52732:1:exon
so has part: feature:53723-53908:1:exon
so has part: feature:54311-54451:1:exon
so has part: feature:57260-57452:1:exon
so has part: feature:57904-58040:1:exon
so has part: feature:58139-58214:1:exon
so has part: feature:59099-59188:1:exon
so has part: feature:60337-60432:1:exon
so has part: feature:60974-61299:1:exon
so has part: feature:61382-61559:1:exon
so has part: feature:62736-62872:1:exon
so has part: feature:62964-63133:1:exon
so has part: feature:64114-64306:1:exon
so has part: feature:64876-65012:1:exon
so has part: feature:65100-65286:1:exon
so has part: feature:66127-66296:1:exon
so has part: feature:66758-67192:1:exon
so has part: feature:67695-67873:1:exon
so has part: feature:67986-68167:1:exon
so has part: feature:68733-68903:1:exon
so has part: feature:70522-70557:1:exon
so has part: feature:70652-70873:1:exon
so has part: feature:71607-71812:1:exon
so has part: feature:72611-72780:1:exon
so has part: feature:73177-73373:1:exon
so has part: feature:73465-73579:1:exon
so has part: feature:73771-73944:1:exon
so has part: feature:74551-74730:1:exon
so has part: feature:75092-75175:1:exon
so has part: feature:75608-76033:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51263-51338:1:exon

position:51338:1
position: 51338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:51437-51618:1:exon

position:51437:1
position: 51437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51618:1
position: 51618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52545-52732:1:exon

position:52545:1
position: 52545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52732:1
position: 52732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:53723-53908:1:exon

position:53723:1
position: 53723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53908:1
position: 53908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:54311-54451:1:exon

position:54311:1
position: 54311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54451:1
position: 54451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:57260-57452:1:exon

position:57260:1
position: 57260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57452:1
position: 57452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:57904-58040:1:exon

position:57904:1
position: 57904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58040:1
position: 58040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:58139-58214:1:exon

position:58139:1
position: 58139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58214:1
position: 58214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:59099-59188:1:exon

position:59099:1
position: 59099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59188:1
position: 59188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:60337-60432:1:exon

position:60337:1
position: 60337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60432:1
position: 60432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:60974-61299:1:exon

position:60974:1
position: 60974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61299:1
position: 61299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:61382-61559:1:exon

position:61382:1
position: 61382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61559:1
position: 61559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:62736-62872:1:exon

position:62736:1
position: 62736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62872:1
position: 62872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:62964-63133:1:exon

position:62964:1
position: 62964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63133:1
position: 63133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:64114-64306:1:exon

position:64114:1
position: 64114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64306:1
position: 64306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:64876-65012:1:exon

position:64876:1
position: 64876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65012:1
position: 65012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:65100-65286:1:exon

position:65100:1
position: 65100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65286:1
position: 65286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:66127-66296:1:exon

position:66127:1
position: 66127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66296:1
position: 66296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:66758-67192:1:exon

position:66758:1
position: 66758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67192:1
position: 67192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:67695-67873:1:exon

position:67695:1
position: 67695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67873:1
position: 67873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:67986-68167:1:exon

position:67986:1
position: 67986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68167:1
position: 68167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:68733-68903:1:exon

position:68733:1
position: 68733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68903:1
position: 68903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:70522-70557:1:exon

position:70522:1
position: 70522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70557:1
position: 70557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:70652-70873:1:exon

position:70652:1
position: 70652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70873:1
position: 70873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:71607-71812:1:exon

position:71607:1
position: 71607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71812:1
position: 71812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:72611-72780:1:exon

position:72611:1
position: 72611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72780:1
position: 72780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:73177-73373:1:exon

position:73177:1
position: 73177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73373:1
position: 73373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:73465-73579:1:exon

position:73465:1
position: 73465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73579:1
position: 73579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:73771-73944:1:exon

position:73771:1
position: 73771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73944:1
position: 73944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:74551-74730:1:exon

position:74551:1
position: 74551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74730:1
position: 74730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:75092-75175:1:exon

position:75092:1
position: 75092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75175:1
position: 75175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:75608-76033:1:exon

position:75608:1
position: 75608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SRCAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: SRCAP
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: helicase SRCAP
translation: MPWGRRAAPGPPPPPPTLPPPAAAPPAPSGQNDGQQPGVPRLLGLPRQRLAPRLLARRPPPAPMAPPGPPEPPSLWDKTHAEIAEQAKHEAEVEHRVAEMKREGFWSLRRLPKVPEPARPKVHWDYLCEEMQWLAADFAQERRWKRGVARKVVRMVMRHHEEQRQKEERAKREEQAKLRRVAAAIAKEVKQFWSNVEKVVQFKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSRSLNAPRATPGAPRRGPPAPHSHLAHQEDGDMEPQDEDVAEGPPPEARRRELELLKREGELPLEELLGSLPPQALLRRNKRPWEPREEDEEFAAEEEEGEDEEETIAAQERLEGDIDHKQELDDLAREGALPMEELLQQYAGAFADSDCDSPPGASSTRSDSPAAESDDEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEQETEAGAPAPEDPCPPPGTQEHPGGPPPAAPPPPTTAPTPKKEITDIAAAAESLQPKGYTLATTQVKTPIPHLLRGTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGSWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERRLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWKYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPRVFQSHREFKEWFSNPLTGMIEGSQEYNESLVKRLHKVLRPFLLRRLKVDVEKQMPKKYEHVLKCRLSKRQRYLYDDFMGQASTKATLASGHFMSVINVLMQLRKVCNHPDLFEPRPVHSPFITEGICFVTASLVLRALDPDPFKHVDMGLFDLVALEGRVSRYAADTFLPRWRVTRRLVEDVAAAPDPPPRPKPVRMKVNRMLQPVPKAESRAVLLLNSPRPGGGTPAPLGVLPLGPAPPPAGHAPSPTGHAPQPAGHAPLLVGPAPPGVTLAPALLAPAPPVPAPSAVGSAPAGGAPPAAAAAPLLPPGGAGLGLGLGLALAAPPRPPPPPAACAGSAPRRPRPRPAAHSFGRSPRSRHPSPPPSRPPTPLWGARGGPPWLHTPSPVPARSAFCWPPDMQARLPSGEVVSIGQLAALAQRPGGTPGGATPGGAKPLTLQLQGSKLTLAAPPAAAPGPRPPPAASHGTWCIWWRLGGSTRSWAPPPRSPCWHPSPPPGPRRGSPCRDPPPAPHHWPPHRHPLKGVLEMKWGEGTQESLEAKRGRAGAERLERLLRLNELRCGLAPVYGSEVLGLCTLPPPHPTPGGGPWXRAVLAPPQRLRQLQPLLDRFIFVLPPVEARGVALHSCRPPPWRLRQRAQLEQRAAGGAGAPRASPAPGCCAACAPTSPDLRLIQYDCGKLQTLDVLLRRLKAGAHRVLIFTQMTRMLDVLERFLTYHGHIYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLAGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMAPEEPGRREPDRDKEKEKDKEKDKDRDGDVPPDEDEDPAATRRTHILEQALCGAEDPEDIRAASQAQAERVAALAEFSESLSPEEERGGPEPEEELSKAEQEIAALVEQLTPIERYAMNFLEASLEDVSREELKQAEEQVEAARKDIDQAKGGGRFRLPPQEEEEEEAATTPGGGRRSRGTPATPAGAGSPPAPSRAHRHPRQSAPAGRWDGQPGPPDVAAGHPDVAAGHPRRPRGRRRRPPGGQGRPPDPPRPPRPRR
SIO_010081: SRCAP
subclass of: SO_0000673
so part of: SRCAP
location: join(51540..51618,52545..52732,53723..53908,54311..54451,57260..57452,57904..58040,58139..58214,59099..59188,60337..60432,60974..61299,61382..61559,62736..62872,62964..63133,64114..64306,64876..65012,65100..65286,66127..66296,66758..67192,67695..67873,67986..68167,68733..68903,70522..70557,70652..70873,71607..71812,72611..72780,73177..73373,73465..73579,73771..73944,74551..74730,75092..75175,75608..75976)
location: region:51540-75976:1
so has part: feature:51540-51618:1:exon
so has part: feature:52545-52732:1:exon
so has part: feature:53723-53908:1:exon
so has part: feature:54311-54451:1:exon
so has part: feature:57260-57452:1:exon
so has part: feature:57904-58040:1:exon
so has part: feature:58139-58214:1:exon
so has part: feature:59099-59188:1:exon
so has part: feature:60337-60432:1:exon
so has part: feature:60974-61299:1:exon
so has part: feature:61382-61559:1:exon
so has part: feature:62736-62872:1:exon
so has part: feature:62964-63133:1:exon
so has part: feature:64114-64306:1:exon
so has part: feature:64876-65012:1:exon
so has part: feature:65100-65286:1:exon
so has part: feature:66127-66296:1:exon
so has part: feature:66758-67192:1:exon
so has part: feature:67695-67873:1:exon
so has part: feature:67986-68167:1:exon
so has part: feature:68733-68903:1:exon
so has part: feature:70522-70557:1:exon
so has part: feature:70652-70873:1:exon
so has part: feature:71607-71812:1:exon
so has part: feature:72611-72780:1:exon
so has part: feature:73177-73373:1:exon
so has part: feature:73465-73579:1:exon
so has part: feature:73771-73944:1:exon
so has part: feature:74551-74730:1:exon
so has part: feature:75092-75175:1:exon
so has part: feature:75608-75976:1:exon

XP_052631067.1
type: Protein
SIO_000068: ncbiprotein

position:51540:1
position: 51540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75976:1
position: 75976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51540-51618:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52545-52732:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53723-53908:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:54311-54451:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:57260-57452:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:57904-58040:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:58139-58214:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:59099-59188:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:60337-60432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:60974-61299:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:61382-61559:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62736-62872:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62964-63133:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:64114-64306:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:64876-65012:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:65100-65286:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:66127-66296:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:66758-67192:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:67695-67873:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:67986-68167:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:68733-68903:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:70522-70557:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:70652-70873:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:71607-71812:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:72611-72780:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:73177-73373:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:73465-73579:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:73771-73944:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:74551-74730:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:75092-75175:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:75608-75976:1:exon

RNF40
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: RNF40
note: ring finger protein 40; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 79995..96852
location: region:79995-96852:1
so has part: feature:79995-96852:1:exon
subclass of: SO_0000010

128136013
type: Gene
SIO_000068: ncbigene

position:79995:1
position: 79995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96852:1
position: 96852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79995-96852:1:exon

RNF40
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: RNF40
product: ring finger protein 40
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_052775108.1
SIO_010081: RNF40
subclass of: SO_0000673
so part of: RNF40
location: join(79995..80196,80516..80542,80820..81094,81189..81357,82477..82627,83204..83461,84313..84425,85404..85550,86188..86262,86984..87103,87525..87706,88842..88977,89354..89475,90063..90576,90921..91038,92759..92909,93424..93636,94074..94199,94456..94596,95379..95480,96223..96852)
location: region:79995-96852:1
so has part: feature:79995-80196:1:exon
so has part: feature:80516-80542:1:exon
so has part: feature:80820-81094:1:exon
so has part: feature:81189-81357:1:exon
so has part: feature:82477-82627:1:exon
so has part: feature:83204-83461:1:exon
so has part: feature:84313-84425:1:exon
so has part: feature:85404-85550:1:exon
so has part: feature:86188-86262:1:exon
so has part: feature:86984-87103:1:exon
so has part: feature:87525-87706:1:exon
so has part: feature:88842-88977:1:exon
so has part: feature:89354-89475:1:exon
so has part: feature:90063-90576:1:exon
so has part: feature:90921-91038:1:exon
so has part: feature:92759-92909:1:exon
so has part: feature:93424-93636:1:exon
so has part: feature:94074-94199:1:exon
so has part: feature:94456-94596:1:exon
so has part: feature:95379-95480:1:exon
so has part: feature:96223-96852:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79995-80196:1:exon

position:80196:1
position: 80196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:80516-80542:1:exon

position:80516:1
position: 80516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80542:1
position: 80542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80820-81094:1:exon

position:80820:1
position: 80820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81094:1
position: 81094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:81189-81357:1:exon

position:81189:1
position: 81189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81357:1
position: 81357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:82477-82627:1:exon

position:82477:1
position: 82477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82627:1
position: 82627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:83204-83461:1:exon

position:83204:1
position: 83204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83461:1
position: 83461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:84313-84425:1:exon

position:84313:1
position: 84313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84425:1
position: 84425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:85404-85550:1:exon

position:85404:1
position: 85404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85550:1
position: 85550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:86188-86262:1:exon

position:86188:1
position: 86188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86262:1
position: 86262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:86984-87103:1:exon

position:86984:1
position: 86984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87103:1
position: 87103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:87525-87706:1:exon

position:87525:1
position: 87525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87706:1
position: 87706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:88842-88977:1:exon

position:88842:1
position: 88842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88977:1
position: 88977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:89354-89475:1:exon

position:89354:1
position: 89354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89475:1
position: 89475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:90063-90576:1:exon

position:90063:1
position: 90063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90576:1
position: 90576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:90921-91038:1:exon

position:90921:1
position: 90921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91038:1
position: 91038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:92759-92909:1:exon

position:92759:1
position: 92759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92909:1
position: 92909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:93424-93636:1:exon

position:93424:1
position: 93424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93636:1
position: 93636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:94074-94199:1:exon

position:94074:1
position: 94074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94199:1
position: 94199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:94456-94596:1:exon

position:94456:1
position: 94456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94596:1
position: 94596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:95379-95480:1:exon

position:95379:1
position: 95379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95480:1
position: 95480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:96223-96852:1:exon

position:96223:1
position: 96223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RNF40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: RNF40
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase BRE1B
translation: MGAGGGSHGVSVGPRGSPDLSRTRAAFGGGVAPLRPPRPRPPPALLSWLVAAEEEGTAFPLRSPHPSDPYRFAIDSLTPLLPLVTPITPPLPLITLLPPPRPMIPPPPITHPSHHHHPPQARPCQGRGAKRGASDGGERGPPREETPREEQPPTTLIEPLRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLLVNRFWGQLDAEVQALLRRYEGEGGTPPAPPGDPPEPRPEGPEPPQPPSARPKGSDRRAEPWGGPGVPPPPPPPTAPPPGGMGGAPGGAGGRFRGGVEPQRPRGGGAAPAPPPRLRPRRRRPFGGGAGGGHRRAHELGARLAARPELAEAGRALLRELLREHRRLQDLTLQLQEKHHRVSLELAELQDKATSAETKVLEMGTTVEGLQWDSAKLRKREGRLDRHLAEALEQLTSGSYGSGSSGGFQGGQITLSMQKFEMLNAELEGNQELANSRMAELEKLQQELQQAVRGHERLKVALRSLPEEAVKETLEYKVLESQFSLLYHESLQVKTQLDEARALLLATKNSHLRHIEHMESDELGVQKRLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDVQRYKRKLREVQAEINKLRLQASGAPPPQGSAPPPPPPPTAATAAPPEETTTARWQWGGGQAPPPSRKKRAGPHQAPPPLSPSGRQPAHPPRPKRPPHDDCLKRRSLPLPSPPLPPHRPPPLPRPPRRSPPPPRAKDPPPAPPRPGASRGGPERERERLRERERPKGPPDEPKKKDSEVLKQLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEAEELRGRARELEERERRESKKLADEEALRRLRQAEEQIEHLQRKLAATKQEEEALLSEMDVTGQAFEDMQEQNLRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELAEQVLALKAQVDAQLLVVQKLEEKERGLQSSLAAVEKELALRSQALELNKRKAVEAAQLAEDLRAQGEHVQARLRELQACAAENRAAKDKESLSLKRAQEELSRLRRKLEKQRKVEVYADADQILQEEIKEYRARLTCPCCNARKKDAVLTKCFHVFCFECVKSRYDTRQRKCPKCNAAFGAHDFHRVYIS
SIO_010081: RNF40
subclass of: SO_0000673
so part of: RNF40
location: join(79995..80196,80516..80542,80820..81094,81189..81357,82477..82627,83204..83461,84313..84425,85404..85550,86188..86262,86984..87103,87525..87706,88842..88977,89354..89475,90063..90576,90921..91038,92759..92909,93424..93636,94074..94199,94456..94596,95379..95480,96223..96399)
location: region:79995-96399:1
so has part: feature:79995-80196:1:exon
so has part: feature:80516-80542:1:exon
so has part: feature:80820-81094:1:exon
so has part: feature:81189-81357:1:exon
so has part: feature:82477-82627:1:exon
so has part: feature:83204-83461:1:exon
so has part: feature:84313-84425:1:exon
so has part: feature:85404-85550:1:exon
so has part: feature:86188-86262:1:exon
so has part: feature:86984-87103:1:exon
so has part: feature:87525-87706:1:exon
so has part: feature:88842-88977:1:exon
so has part: feature:89354-89475:1:exon
so has part: feature:90063-90576:1:exon
so has part: feature:90921-91038:1:exon
so has part: feature:92759-92909:1:exon
so has part: feature:93424-93636:1:exon
so has part: feature:94074-94199:1:exon
so has part: feature:94456-94596:1:exon
so has part: feature:95379-95480:1:exon
so has part: feature:96223-96399:1:exon

XP_052631068.1
type: Protein
SIO_000068: ncbiprotein

position:96399:1
position: 96399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79995-80196:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80516-80542:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80820-81094:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81189-81357:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:82477-82627:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:83204-83461:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84313-84425:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:85404-85550:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:86188-86262:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:86984-87103:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:87525-87706:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:88842-88977:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:89354-89475:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:90063-90576:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:90921-91038:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:92759-92909:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:93424-93636:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:94074-94199:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:94456-94596:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:95379-95480:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:96223-96399:1:exon

RUSF1
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: RUSF1
note: RUS family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 97321..104764
location: region:97321-104764:1
so has part: feature:97321-104764:1:exon
subclass of: SO_0000010

128136021
type: Gene
SIO_000068: ncbigene

position:97321:1
position: 97321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104764:1
position: 104764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97321-104764:1:exon

RUSF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: RUSF1
product: RUS family member 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_052775117.1
SIO_010081: RUSF1
subclass of: SO_0000673
so part of: RUSF1
location: join(97321..97751,98459..98536,98903..99017,99366..99411,99859..99891,99999..100104,101027..101128,101530..101600,102271..102515,102776..102833,102934..103004,103277..103438,103969..104046,104594..104764)
location: region:97321-104764:1
so has part: feature:97321-97751:1:exon
so has part: feature:98459-98536:1:exon
so has part: feature:98903-99017:1:exon
so has part: feature:99366-99411:1:exon
so has part: feature:99859-99891:1:exon
so has part: feature:99999-100104:1:exon
so has part: feature:101027-101128:1:exon
so has part: feature:101530-101600:1:exon
so has part: feature:102271-102515:1:exon
so has part: feature:102776-102833:1:exon
so has part: feature:102934-103004:1:exon
so has part: feature:103277-103438:1:exon
so has part: feature:103969-104046:1:exon
so has part: feature:104594-104764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97321-97751:1:exon

position:97751:1
position: 97751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:98459-98536:1:exon

position:98459:1
position: 98459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98536:1
position: 98536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:98903-99017:1:exon

position:98903:1
position: 98903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99017:1
position: 99017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:99366-99411:1:exon

position:99366:1
position: 99366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99411:1
position: 99411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:99859-99891:1:exon

position:99859:1
position: 99859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99891:1
position: 99891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:99999-100104:1:exon

position:99999:1
position: 99999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100104:1
position: 100104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:101027-101128:1:exon

position:101027:1
position: 101027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101128:1
position: 101128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:101530-101600:1:exon

position:101530:1
position: 101530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101600:1
position: 101600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:102271-102515:1:exon

position:102271:1
position: 102271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102515:1
position: 102515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:102776-102833:1:exon

position:102776:1
position: 102776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102833:1
position: 102833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:102934-103004:1:exon

position:102934:1
position: 102934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103004:1
position: 103004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:103277-103438:1:exon

position:103277:1
position: 103277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103438:1
position: 103438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:103969-104046:1:exon

position:103969:1
position: 103969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104046:1
position: 104046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:104594-104764:1:exon

position:104594:1
position: 104594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RUSF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: RUSF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RUS family member 1
translation: MERPEGPGGGLGPPHPPPEPPQDPPPLCRELWGSREAARYREGPRGGLQRLVPPGACSHSCLRRAAAQVLLPQGYPESVSPDYLQYQCWDALQALCSTLMGALATRAVLQAVGVGDSAATVTGATLTWVLRDGVGMVTRITFAWLQGSRLDCEAKQWRLAADVLNDAALVLELLAPAWPRAGPALLTLAAAAKCIVGVAGGATRAALAVHQARRDNMADVAAKDSSQETLVNGAGLLLALLLLPLLEGRPWVTWGVVTLLLGTHLGANLGALGALRLPTLNRPRLRLALGGALRGGARQGGVRQPQPTGEGGVAVVVVPGPDDVNPREPLLPGFSTRLTLHLGAPLHRLVHSEAEFKKALECGTEDYIIVLRPSQGWVGVGLRRGAPPDTPLRACAQALLLEELLGPDLPPGAPMGAALRPLQQRLRRCPPGTVPWGVVAESSRLWRTLGPTFLRGLAAAGWETQRHLLAPDEWQLDWAGPGGGAPGDEPCPSPNNRLRPSPD
SIO_010081: RUSF1
subclass of: SO_0000673
so part of: RUSF1
location: join(97551..97751,98459..98536,98903..99017,99366..99411,99859..99891,99999..100104,101027..101128,101530..101600,102271..102515,102776..102833,102934..103004,103277..103438,103969..104046,104594..104739)
location: region:97551-104739:1
so has part: feature:97551-97751:1:exon
so has part: feature:98459-98536:1:exon
so has part: feature:98903-99017:1:exon
so has part: feature:99366-99411:1:exon
so has part: feature:99859-99891:1:exon
so has part: feature:99999-100104:1:exon
so has part: feature:101027-101128:1:exon
so has part: feature:101530-101600:1:exon
so has part: feature:102271-102515:1:exon
so has part: feature:102776-102833:1:exon
so has part: feature:102934-103004:1:exon
so has part: feature:103277-103438:1:exon
so has part: feature:103969-104046:1:exon
so has part: feature:104594-104739:1:exon

XP_052631077.1
type: Protein
SIO_000068: ncbiprotein

position:97551:1
position: 97551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104739:1
position: 104739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97551-97751:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:98459-98536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:98903-99017:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:99366-99411:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:99859-99891:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:99999-100104:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:101027-101128:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:101530-101600:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:102271-102515:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:102776-102833:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:102934-103004:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:103277-103438:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:103969-104046:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:104594-104739:1:exon

LOC128136014
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: LOC128136014
note: sodium/glucose cotransporter 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(105411..115878)
location: region:105411-115878:-1
so has part: feature:105411-115878:-1:exon
subclass of: SO_0000010

128136014
type: Gene
SIO_000068: ncbigene

position:105411:-1
position: 105411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:115878:-1
position: 115878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105411-115878:-1:exon

LOC128136014
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: LOC128136014
product: sodium/glucose cotransporter 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
transcript id: XM_052775109.1
SIO_010081: LOC128136014
subclass of: SO_0000673
so part of: LOC128136014
location: complement(join(105411..106009,106101..106317,106607..106775,106858..107008,108679..108786,110033..110168,110704..110903,111246..111326,111903..112008,112398..112503,112965..113023,113780..113884,114150..114221,115795..115878))
location: region:105411-115878:-1
so has part: feature:115795-115878:-1:exon
so has part: feature:114150-114221:-1:exon
so has part: feature:113780-113884:-1:exon
so has part: feature:112965-113023:-1:exon
so has part: feature:112398-112503:-1:exon
so has part: feature:111903-112008:-1:exon
so has part: feature:111246-111326:-1:exon
so has part: feature:110704-110903:-1:exon
so has part: feature:110033-110168:-1:exon
so has part: feature:108679-108786:-1:exon
so has part: feature:106858-107008:-1:exon
so has part: feature:106607-106775:-1:exon
so has part: feature:106101-106317:-1:exon
so has part: feature:105411-106009:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:115795-115878:-1:exon

position:115795:-1
position: 115795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:114150-114221:-1:exon

position:114150:-1
position: 114150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:114221:-1
position: 114221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:113780-113884:-1:exon

position:113780:-1
position: 113780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113884:-1
position: 113884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:112965-113023:-1:exon

position:112965:-1
position: 112965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113023:-1
position: 113023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:112398-112503:-1:exon

position:112398:-1
position: 112398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112503:-1
position: 112503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:111903-112008:-1:exon

position:111903:-1
position: 111903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112008:-1
position: 112008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:111246-111326:-1:exon

position:111246:-1
position: 111246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111326:-1
position: 111326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:110704-110903:-1:exon

position:110704:-1
position: 110704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:110903:-1
position: 110903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:110033-110168:-1:exon

position:110033:-1
position: 110033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:110168:-1
position: 110168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:108679-108786:-1:exon

position:108679:-1
position: 108679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108786:-1
position: 108786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:106858-107008:-1:exon

position:106858:-1
position: 106858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:107008:-1
position: 107008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:106607-106775:-1:exon

position:106607:-1
position: 106607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106775:-1
position: 106775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:106101-106317:-1:exon

position:106101:-1
position: 106101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106317:-1
position: 106317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:105411-106009:-1:exon

position:106009:-1
position: 106009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128136014
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: LOC128136014
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: sodium/glucose cotransporter 2-like
translation: MERTTAVNPWDLGVIGGYFLLVLAVGLWSLRRGTRSTISGYFLAGRSMAWGPVGASLFASNIGSGHFVGLAGTGAAGGIAVGGFEWSGMFIVLLLGWVFVPIYLRAGVSTMPEYLGKRFGGGRIQLYLALLSLGLYISTKISVDMYSGAIFIQEALGWDLYAAVGALLAVTALYTVTGGLAALMYADLVQTLIIVVGASVLAGYALGAVGGYEGLVERYPLALPPNVTGPCGRPRPDAFHLLRHPSTGDLPWPGLLLGLGIISAWYWCTDQVIVQRCLAGRSLTHVRAGCVVCGYLKVLPMFLMVLPGMAARVLFPEVVGCADAQGCRRACGTPVGCSNVAYPRLVLTLLPPGLRGLMLAVVLAALMSSLASIFASAGALFTLDVYQRLRPRAGARHLLMAGRLWIVAMVGLSLAWLPVVEAARGGQLFDYIQAIASYLAPPVAAVFFLAVFVPRVNEPGAFWGLLGGLGLGLARLVPEFALGTGTCGSPGRCPPLVCGLHYLHFAALLFLATGLIVIGVSLCYPPIPRQHLHRLVFSLRNSREPRIDLDRQPPKDGAGDVQLQGKGARGCWGGAMGAGGGPKGLGGGPWVRGGSPRVRGRVPWVRGGPMGAEDPELTPPLLLPDVEAEPAGQGVGPVGRGAGPSGERGVSEPPAPPPEDPVWSRVVDVNALILMAVAFFLWGYFA
SIO_010081: LOC128136014
subclass of: SO_0000673
so part of: LOC128136014
location: complement(join(105542..106009,106101..106317,106607..106775,106858..107008,108679..108786,110033..110168,110704..110903,111246..111326,111903..112008,112398..112503,112965..113023,113780..113884,114150..114221,115795..115878))
location: region:105542-115878:-1
so has part: feature:115795-115878:-1:exon
so has part: feature:114150-114221:-1:exon
so has part: feature:113780-113884:-1:exon
so has part: feature:112965-113023:-1:exon
so has part: feature:112398-112503:-1:exon
so has part: feature:111903-112008:-1:exon
so has part: feature:111246-111326:-1:exon
so has part: feature:110704-110903:-1:exon
so has part: feature:110033-110168:-1:exon
so has part: feature:108679-108786:-1:exon
so has part: feature:106858-107008:-1:exon
so has part: feature:106607-106775:-1:exon
so has part: feature:106101-106317:-1:exon
so has part: feature:105542-106009:-1:exon

XP_052631069.1
type: Protein
SIO_000068: ncbiprotein

position:105542:-1
position: 105542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115795-115878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:114150-114221:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:113780-113884:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:112965-113023:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:112398-112503:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:111903-112008:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:111246-111326:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:110704-110903:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:110033-110168:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:108679-108786:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:106858-107008:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:106607-106775:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:106101-106317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:105542-106009:-1:exon

LOC128136015
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: LOC128136015
note: apoptosis-associated speck-like protein containing a CARD; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(117953..119109)
location: region:117953-119109:-1
so has part: feature:117953-119109:-1:exon
subclass of: SO_0000010

128136015
type: Gene
SIO_000068: ncbigene

position:117953:-1
position: 117953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119109:-1
position: 119109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117953-119109:-1:exon

LOC128136015
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: LOC128136015
product: apoptosis-associated speck-like protein containing a CARD
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_052775110.1
SIO_010081: LOC128136015
subclass of: SO_0000673
so part of: LOC128136015
location: complement(join(117953..118435,118773..119109))
location: region:117953-119109:-1
so has part: feature:118773-119109:-1:exon
so has part: feature:117953-118435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118773-119109:-1:exon

position:118773:-1
position: 118773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:117953-118435:-1:exon

position:118435:-1
position: 118435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC128136015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: LOC128136015
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apoptosis-associated speck-like protein containing a CARD
translation: MAGCRDRILRALEELSAAELRRLKAALNRLPLAAGYGTIPRGRMEGADALDLTDLVVGYYREGYGVRVLAEALRRIQRLDLADGLVGDAGEMAVAGGGGGQRLVVRRAALPRAVPVVDGAKGGADTGSGAGNDLLPPPSPPVQPHAAAATPPTSPPTCPPSRRPSASWPATRLALIQRVRGVAALLDRLEADGVLSAEEVAAVAAGPTPQEQMRRLLATAPAWGRRGHRQFLRAMRCLHPHLMEDLGEEGEDAPEGEYAGDP
SIO_010081: LOC128136015
subclass of: SO_0000673
so part of: LOC128136015
location: complement(join(117953..118435,118773..119078))
location: region:117953-119078:-1
so has part: feature:118773-119078:-1:exon
so has part: feature:117953-118435:-1:exon

XP_052631070.1
type: Protein
SIO_000068: ncbiprotein

position:119078:-1
position: 119078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118773-119078:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:117953-118435:-1:exon

ITGAL
type: Gene
subclass of: SO_0000704
RO_0002162: 202280
gene: ITGAL
note: integrin subunit alpha L; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 119189..>130276
location: region:119189-130276:1
so has part: feature:119189-130276:1:exon
subclass of: SO_0000010

128136016
type: Gene
SIO_000068: ncbigene

position:119189:1
position: 119189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130276:1
position: 130276
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119189-130276:1:exon

ITGAL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 202280
gene: ITGAL
product: integrin subunit alpha L
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
transcript id: XM_052775112.1
SIO_010081: ITGAL
subclass of: SO_0000673
so part of: ITGAL
location: join(119189..119267,120277..120385,121132..121226,121508..121566,121657..121771,122270..122400,122747..122892,123091..123235,123424..123574,123676..123743,123819..123951,125176..125324,125410..125541,125984..126187,126270..126400,126762..126910,127001..127152,127476..127589,127703..127915,128118..128225,128298..128377,128462..128548,128632..128707,128811..128927,129052..129132,129552..129659,129749..129838,129943..130053,130170..>130276)
location: region:119189-130276:1
so has part: feature:119189-119267:1:exon
so has part: feature:120277-120385:1:exon
so has part: feature:121132-121226:1:exon
so has part: feature:121508-121566:1:exon
so has part: feature:121657-121771:1:exon
so has part: feature:122270-122400:1:exon
so has part: feature:122747-122892:1:exon
so has part: feature:123091-123235:1:exon
so has part: feature:123424-123574:1:exon
so has part: feature:123676-123743:1:exon
so has part: feature:123819-123951:1:exon
so has part: feature:125176-125324:1:exon
so has part: feature:125410-125541:1:exon
so has part: feature:125984-126187:1:exon
so has part: feature:126270-126400:1:exon
so has part: feature:126762-126910:1:exon
so has part: feature:127001-127152:1:exon
so has part: feature:127476-127589:1:exon
so has part: feature:127703-127915:1:exon
so has part: feature:128118-128225:1:exon
so has part: feature:128298-128377:1:exon
so has part: feature:128462-128548:1:exon
so has part: feature:128632-128707:1:exon
so has part: feature:128811-128927:1:exon
so has part: feature:129052-129132:1:exon
so has part: feature:129552-129659:1:exon
so has part: feature:129749-129838:1:exon
so has part: feature:129943-130053:1:exon
so has part: feature:130170-130276:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119189-119267:1:exon

position:119267:1
position: 119267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:120277-120385:1:exon

position:120277:1
position: 120277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120385:1
position: 120385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:121132-121226:1:exon

position:121132:1
position: 121132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121226:1
position: 121226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:121508-121566:1:exon

position:121508:1
position: 121508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121566:1
position: 121566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:121657-121771:1:exon

position:121657:1
position: 121657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121771:1
position: 121771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:122270-122400:1:exon

position:122270:1
position: 122270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122400:1
position: 122400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:122747-122892:1:exon

position:122747:1
position: 122747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122892:1
position: 122892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:123091-123235:1:exon

position:123091:1
position: 123091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123235:1
position: 123235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:123424-123574:1:exon

position:123424:1
position: 123424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123574:1
position: 123574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:123676-123743:1:exon

position:123676:1
position: 123676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123743:1
position: 123743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:123819-123951:1:exon

position:123819:1
position: 123819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123951:1
position: 123951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:125176-125324:1:exon

position:125176:1
position: 125176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125324:1
position: 125324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:125410-125541:1:exon

position:125410:1
position: 125410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125541:1
position: 125541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:125984-126187:1:exon

position:125984:1
position: 125984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126187:1
position: 126187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:126270-126400:1:exon

position:126270:1
position: 126270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126400:1
position: 126400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:126762-126910:1:exon

position:126762:1
position: 126762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:126910:1
position: 126910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:127001-127152:1:exon

position:127001:1
position: 127001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127152:1
position: 127152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:127476-127589:1:exon

position:127476:1
position: 127476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127589:1
position: 127589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:127703-127915:1:exon

position:127703:1
position: 127703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127915:1
position: 127915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:128118-128225:1:exon

position:128118:1
position: 128118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128225:1
position: 128225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:128298-128377:1:exon

position:128298:1
position: 128298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128377:1
position: 128377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:128462-128548:1:exon

position:128462:1
position: 128462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128548:1
position: 128548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:128632-128707:1:exon

position:128632:1
position: 128632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128707:1
position: 128707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:128811-128927:1:exon

position:128811:1
position: 128811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128927:1
position: 128927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:129052-129132:1:exon

position:129052:1
position: 129052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129132:1
position: 129132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:129552-129659:1:exon

position:129552:1
position: 129552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129659:1
position: 129659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:129749-129838:1:exon

position:129749:1
position: 129749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129838:1
position: 129838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:129943-130053:1:exon

position:129943:1
position: 129943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130053:1
position: 130053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:130170-130276:1:exon

position:130170:1
position: 130170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ITGAL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 202280
gene: ITGAL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: integrin alpha-L
translation: MVPAGAGGIVGVIVAALVAALPHSEAFNVHPAPHRVLTHNGSRSFGHQVLQLNGSRIMVGAPAEVGEGGRLFQCQVETGKCQKVEMEGNSTQTHMGMALARDGDITIACGPGLTRECDRNVYTSGLCLLLDPQLEPRQVLAPGYQGCLPGMVDLVFLFDGSNSMSSEQFGAIRDFMVDVMEKLENTSIHFGAVQFSAEVQLQFTLADYEARPRPRELFAGLNQLRSLTDTFAAIAYVAKTIFTPEMGARAGAKRVMIIITDGDATDEDEGSIREAEERDIIRYIIGVGNNFDSPDTRLYLSQFASRPSSEFVKVLDSFEKLRGLFRELQAKIYDIEGTSDLNRFHLELCSSGMSVEAVQGRWVTGAVGADNWAGGLVELEEAKQNETFVASPSLEENVTDAYLGYAVAGLRVPNRVLVAAGAPRHRHVGSVVLFEVPEATGSWRVLQTLPGEQVGSYFGATLCALDQGGVTVALLVGAPNHFDGRRGGRVHLYRWQKDALEVTEELWGAPGHPLGRFGASVVTLGDLDGDDIPEVAVGAPMEDEERGVVYVFSGRPGGVEPRYSQRLEGRAAAAGLRFFGQALDGAMDLTGDGLVDLAVGAEGHVVVLRSQPVVTVTPQVTFDPPEIPTSGVDCSGVTGIGVTVRLCFDARLVTPAYAGHLETPLDFRLEVDPQRARGRGDFGAGRRGWGERLSVTEGRSCVEEELKIPPCLEDFVTPIRISVTVSLPHGDPQGALLPPNNPPTWTEIPFEKNCGADEVCEANLGVTALPGGPAVLGVPGAEFGVRLVVGNDGEDAYGAALQLQHPVGLSLRRARATQAAAPVSIACWDPDVSVGQPWGLTCNISRPILRAGWQVTVELTFDILQNTSWNESVRLTATAGSDNEPPATLEDNAAAWVVPVRFALGLVATWQEDSTPYLNFTSRRPENKNLQHRYRLETILPPPHGSPPPMVTAFVLLPHTLPHGVTVADPQVRMESGSACVAVGQEEEDAVGQELQRNIAETCSTPQLLLFRCPTAQLPRSSALLLTATLLAPPTIQSPARPRFCSALWVVITPPRFEVAAQFLHAQGVTEVELVREVDALPIYVGGGVGGLLLLLLIIFGLFKCGFFKRNYRERLDQEGEGQGERMGEGEGEGGRGGAG
SIO_010081: ITGAL
subclass of: SO_0000673
so part of: ITGAL
location: join(119210..119267,120277..120385,121132..121226,121508..121566,121657..121771,122270..122400,122747..122892,123091..123235,123424..123574,123676..123743,123819..123951,125176..125324,125410..125541,125984..126187,126270..126400,126762..126910,127001..127152,127476..127589,127703..127915,128118..128225,128298..128377,128462..128548,128632..128707,128811..128927,129052..129132,129552..129659,129749..129838,129943..130053,130170..>130276)
location: region:119210-130276:1
so has part: feature:119210-119267:1:exon
so has part: feature:120277-120385:1:exon
so has part: feature:121132-121226:1:exon
so has part: feature:121508-121566:1:exon
so has part: feature:121657-121771:1:exon
so has part: feature:122270-122400:1:exon
so has part: feature:122747-122892:1:exon
so has part: feature:123091-123235:1:exon
so has part: feature:123424-123574:1:exon
so has part: feature:123676-123743:1:exon
so has part: feature:123819-123951:1:exon
so has part: feature:125176-125324:1:exon
so has part: feature:125410-125541:1:exon
so has part: feature:125984-126187:1:exon
so has part: feature:126270-126400:1:exon
so has part: feature:126762-126910:1:exon
so has part: feature:127001-127152:1:exon
so has part: feature:127476-127589:1:exon
so has part: feature:127703-127915:1:exon
so has part: feature:128118-128225:1:exon
so has part: feature:128298-128377:1:exon
so has part: feature:128462-128548:1:exon
so has part: feature:128632-128707:1:exon
so has part: feature:128811-128927:1:exon
so has part: feature:129052-129132:1:exon
so has part: feature:129552-129659:1:exon
so has part: feature:129749-129838:1:exon
so has part: feature:129943-130053:1:exon
so has part: feature:130170-130276:1:exon

XP_052631072.1
type: Protein
SIO_000068: ncbiprotein

position:119210:1
position: 119210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119210-119267:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:120277-120385:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121132-121226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:121508-121566:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:121657-121771:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122270-122400:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122747-122892:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:123091-123235:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:123424-123574:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:123676-123743:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:123819-123951:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:125176-125324:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:125410-125541:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:125984-126187:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:126270-126400:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:126762-126910:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:127001-127152:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:127476-127589:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:127703-127915:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:128118-128225:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:128298-128377:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:128462-128548:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:128632-128707:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:128811-128927:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:129052-129132:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:129552-129659:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:129749-129838:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:129943-130053:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:130170-130276:1:exon